comparison blast_report.py @ 26:e2cab62e1943 draft

Uploaded

25:d29bf2f7da9d

from __future__ import print_function

'''Report on BLAST results.

python blast_report.py input_tab cheetah_tmpl output_html output_tab [-i [min_identity]] [-f filterkw1,...,filterkwN]] [-b bin1_label=bin1_path[,...binN_label=binN_path]]
'''

import argparse
import re
import sys

#BINS
bins=[]
if args.bins != None:
    bins = list([BLASTBin(label_file.split('=')[0],label_file.split('=')[-1]) for label_file in args.bins.split(',')])
print('database bins: %s' % str([bin.label for bin in bins]))

#FILTERS
filter_pident = 0
filter_kws = []

26:e2cab62e1943

from __future__ import print_function

'''Report on BLAST results.

python blast_report.py input_tab cheetah_tmpl output_html output_tab [-i [min_identity]] [-f filterkw1,...,filterkwN]] [-b bin1_label bin1_path[,...binN_label binN_path]]
'''

import argparse
import re
import sys

#BINS
bins=[]
if args.bins != None:
    for bin in args.bins:
        bins.append(BLASTBin(bin[0], bin[1])

print('database bins: %s' % str([bin.label for bin in bins]))

#FILTERS
filter_pident = 0
filter_kws = []