Mercurial > repos > dfornika > artic_margin_cons_medaka

changeset 6:f52f0a2778f8 draft

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/artic_margin_cons_medaka commit cdc887baab41af2b386b1ec7239b55d474c0fff5-dirty"
author dfornika
date Tue, 17 Mar 2020 21:42:53 +0000
parents 47eb99e41bfb
children be08b76fd78b
files artic_margin_cons_medaka.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/artic_margin_cons_medaka.xml	Tue Mar 17 21:20:38 2020 +0000
+++ b/artic_margin_cons_medaka.xml	Tue Mar 17 21:42:53 2020 +0000
@@ -6,7 +6,7 @@
         <requirement type="package" version="1.9">samtools</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        ln -s '${input_alignment}' '${input_alignment.element_identifier}' alignment.bam &&
+        ln -s '${input_alignment}' '${input_alignment.element_identifier}' &&
         samtools index '${input_alignment.element_identifier}' &&
         python '${__tool_directory__}/margin_cons_medaka.py'
           --depth '${minimum_depth}'