diff vcfsort.xml @ 1:586f4536fc65 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfsort commit b94a1012a2c76e77564f504543e90a692a8de562

--- a/vcfsort.xml	Mon Nov 09 12:34:33 2015 -0500
+++ b/vcfsort.xml	Mon Oct 03 11:22:55 2016 -0400
@@ -1,27 +1,30 @@
-<tool id="vcfsort" name="VCFsort:" version="0.0.2">
-  <description>Sort VCF dataset by coordinate</description>
-  <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command>
-  <inputs>
-    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
-  </inputs>
-  <outputs>
-    <data format="vcf" name="out_file1" />
-  </outputs>
-  <tests>
-    <test>
-      <param name="input1" value="vcfsort-test1-input.vcf"/>
-      <output name="out_file1" file="vcfsort-test1.vcf"/>
-    </test>
-    </tests>
-  <help>
-
-This tool uses native UNIX sort command to order VCF dataset in coordinate order. For technically inclined the command is::
-
- (grep ^"#" INPUT_file ; grep -v ^"#" INPUT_file | LC_ALL=C sort -k1,1 -k2,2n -V) > OUTPUT_file
-
-.. class:: infomark
-
-The same result can be achieved with the Galaxy's general purpose sort tool (in this case sort on the first and the second column in ascending order).
-
-</help>
-</tool>
+<tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@.0">
+  <description>Sort VCF dataset by coordinate</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command>
+  <inputs>
+    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
+  </inputs>
+  <outputs>
+    <data format="vcf" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="vcfsort-test1-input.vcf"/>
+      <output name="out_file1" file="vcfsort-test1.vcf"/>
+    </test>
+    </tests>
+  <help>
+
+This tool uses native UNIX sort command to order VCF dataset in coordinate order. For technically inclined the command is::
+
+ (grep ^"#" INPUT_file ; grep -v ^"#" INPUT_file | LC_ALL=C sort -k1,1 -k2,2n -V) > OUTPUT_file
+
+.. class:: infomark
+
+The same result can be achieved with the Galaxy's general purpose sort tool (in this case sort on the first and the second column in ascending order).
+
+</help>
+</tool>