comparison vcfsort.xml @ 1:586f4536fc65 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfsort commit b94a1012a2c76e77564f504543e90a692a8de562

0:59d4413e75eb

<tool id="vcfsort" name="VCFsort:" version="0.0.2">
  <description>Sort VCF dataset by coordinate</description>
  <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
  </inputs>
  <outputs>

1:586f4536fc65

<tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@.0">
  <description>Sort VCF dataset by coordinate</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
  </inputs>
  <outputs>