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changeset 3:31712f1ff0ec draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfhethom commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 12:57:49 +0000
parents d3482e14d5a4
children
files macros.xml vcfhethom.xml
diffstat 2 files changed, 12 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Mar 26 12:15:13 2018 -0400
+++ b/macros.xml	Thu Jan 23 12:57:49 2020 +0000
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc3">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,10 +10,10 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
-   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
-   	<xml name="citations">
-   	     <citations>
-             <citation type="bibtex">
+   <token name="@WRAPPER_VERSION@">1.0.0_rc3</token>
+       <xml name="citations">
+           <citations>
+               <citation type="bibtex">
 @misc{Garrison2015,
   author = {Garrison, Erik},
   year = {2015},
@@ -22,8 +22,8 @@
   journal = {GitHub repository},
   url = {https://github.com/ekg/vcflib},
 }
-             </citation>
-   	     </citations>
-   	</xml>
+            </citation>
+        </citations>
+        </xml>
     <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token>
 </macros>
--- a/vcfhethom.xml	Mon Mar 26 12:15:13 2018 -0400
+++ b/vcfhethom.xml	Thu Jan 23 12:57:49 2020 +0000
@@ -6,15 +6,13 @@
   <expand macro="requirements"/>
   <expand macro="stdio" />
   <command>
-
    #if str($analysis_type) == "count":
-       vcfhetcount "${vcf_input}" > "${out_file1}"
-   #elif str($analysis_type) == "ratio": 
-       vcfhethomratio "${vcf_input}" > "${out_file1}"
+       vcfhetcount '${vcf_input}' > '${out_file1}'
+   #elif str($analysis_type) == "ratio":
+       vcfhethomratio '${vcf_input}' > '${out_file1}'
    #elif str($analysis_type) == "allele_count":
-       vcfcountalleles "${vcf_input}" > "${out_file1}" 
+       vcfcountalleles '${vcf_input}' > '${out_file1}'
    #end if
-
   </command>
   <inputs>
     <param name="analysis_type" type="select" display="radio" label="Select type of calculation:">