Mercurial > repos > devteam > vcfhethom
comparison vcfhethom.xml @ 3:31712f1ff0ec draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfhethom commit 36e9065027cc7bf721e9d203208477ee88906c57"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 12:57:49 +0000 |
| parents | d3482e14d5a4 |
| children |
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| 2:d3482e14d5a4 | 3:31712f1ff0ec |
|---|---|
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <command> | 8 <command> |
| 9 | |
| 10 #if str($analysis_type) == "count": | 9 #if str($analysis_type) == "count": |
| 11 vcfhetcount "${vcf_input}" > "${out_file1}" | 10 vcfhetcount '${vcf_input}' > '${out_file1}' |
| 12 #elif str($analysis_type) == "ratio": | 11 #elif str($analysis_type) == "ratio": |
| 13 vcfhethomratio "${vcf_input}" > "${out_file1}" | 12 vcfhethomratio '${vcf_input}' > '${out_file1}' |
| 14 #elif str($analysis_type) == "allele_count": | 13 #elif str($analysis_type) == "allele_count": |
| 15 vcfcountalleles "${vcf_input}" > "${out_file1}" | 14 vcfcountalleles '${vcf_input}' > '${out_file1}' |
| 16 #end if | 15 #end if |
| 17 | |
| 18 </command> | 16 </command> |
| 19 <inputs> | 17 <inputs> |
| 20 <param name="analysis_type" type="select" display="radio" label="Select type of calculation:"> | 18 <param name="analysis_type" type="select" display="radio" label="Select type of calculation:"> |
| 21 <option value="count">Compute the number of heterozygotes</option> | 19 <option value="count">Compute the number of heterozygotes</option> |
| 22 <option value="ratio">Compute the ratio between heterozygotes and homozygotes</option> | 20 <option value="ratio">Compute the ratio between heterozygotes and homozygotes</option> |