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annotate vcfgenotypes.xml @ 0:a1a3b63d2af2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 12:32:49 -0500
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children 30963674e8fd
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a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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1 <tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.3">
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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2 <description>Convert numerical representation of genotypes to allelic</description>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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3 <macros>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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4 <import>macros.xml</import>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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5 </macros>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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6 <expand macro="requirements"></expand>
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7 <expand macro="stdio" />
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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8 <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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9 <inputs>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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10 <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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11 </inputs>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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12 <outputs>
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13 <data format="tabular" name="out_file1" />
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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14 </outputs>
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15 <tests>
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16 <test>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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17 <param name="vcf_input" value="vcflib.vcf"/>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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18 <output name="out_file1" file="vcfgenotypes-test1.tab"/>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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19 </test>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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20 </tests>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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21 <help>
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a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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23 Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields.
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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25 ----
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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26
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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27 Vcfgenotypes @IS_PART_OF_VCFLIB@
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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28 </help>
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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29 <expand macro="citations" />
a1a3b63d2af2 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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30 </tool>