Mercurial > repos > devteam > vcfgeno2haplo

annotate test-data/vcfgeno2haplo-test1.vcf @ 0:74d4e986f488 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 12:32:31 -0500
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74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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1 ##fileformat=VCFv4.1
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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2 ##fileDate=20140610
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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3 ##source=Dan
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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4 ##reference=file:///galaxy/data/phiX/sam_index/phiX.fa
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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5 ##filter="AF > .001"
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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6 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
devteam
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7 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
devteam
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9 ##FORMAT=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
devteam
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10 ##FORMAT=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
devteam
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11 ##FORMAT=<ID=NC,Number=.,Type=String,Description="Nucleotide and indel counts">
74d4e986f488 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
devteam
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12 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT groupA groupB