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annotate vcfcombine.xml @ 2:ee97a6e8a18a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcombine commit c2af291b241e37e0a55adbc1fc72a9fa37d93582
author iuc
date Mon, 26 Mar 2018 12:12:50 -0400
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children e147c59f04dc
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ee97a6e8a18a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcombine commit c2af291b241e37e0a55adbc1fc72a9fa37d93582
iuc
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1 <tool id="vcfcombine" name="VCFcombine:" version="@WRAPPER_VERSION@+galaxy0">
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2 <description>Combine multiple VCF datasets</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements"/>
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7 <expand macro="stdio" />
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8 <command>
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9 vcfcombine
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11 #for $input_vcf in $input_vcfs:
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12 "${input_vcf}"
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13 #end for
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15 > "${out_file1}"
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17 </command>
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18 <inputs>
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19 <param name="input_vcfs" type="data" format="vcf" label="Select VCF Datasets" min="2" multiple="True"/>
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20 </inputs>
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21 <outputs>
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22 <data format="vcf" name="out_file1" />
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23 </outputs>
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24 <tests>
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25 <test>
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26 <param name="input_vcfs" value="vcflib.vcf,vcflib.vcf" ftype="vcf"/>
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27 <output name="out_file1" file="vcfcombine-test1.vcf"/>
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28 </test>
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29 </tests>
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30 <help>
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0b93ada8f718 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcombine commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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32 Combines VCF files positionally, combining samples when sites and alleles are identical. Any number of VCF files may be combined. The INFO field and other columns are taken from one of the files, which are combined when records in multiple files match. Alleles must have identical ordering to be combined into one record. If they do not, multiple records will be emitted.
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34 -----
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0b93ada8f718 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcombine commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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36 Vcfcombine @IS_PART_OF_VCFLIB@
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37 </help>
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38 <expand macro="citations" />
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39 </tool>