Mercurial > repos > devteam > vcfbedintersect
changeset 3:67ec5bcc35ec draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfbedintersect commit 36e9065027cc7bf721e9d203208477ee88906c57"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 12:53:46 +0000 |
| parents | b886d025cc05 |
| children | |
| files | macros.xml vcfbedintersect.xml |
| diffstat | 2 files changed, 10 insertions(+), 10 deletions(-) [+] |
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--- a/macros.xml Mon Mar 26 12:12:01 2018 -0400 +++ b/macros.xml Thu Jan 23 12:53:46 2020 +0000 @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.0_rc1">vcflib</requirement> + <requirement type="package" version="1.0.0_rc3">vcflib</requirement> <yield/> </requirements> </xml> @@ -10,10 +10,10 @@ <exit_code range="1:" level="fatal" /> </stdio> </xml> - <token name="@WRAPPER_VERSION@">1.0.0_rc1</token> - <xml name="citations"> - <citations> - <citation type="bibtex"> + <token name="@WRAPPER_VERSION@">1.0.0_rc3</token> + <xml name="citations"> + <citations> + <citation type="bibtex"> @misc{Garrison2015, author = {Garrison, Erik}, year = {2015}, @@ -22,8 +22,8 @@ journal = {GitHub repository}, url = {https://github.com/ekg/vcflib}, } - </citation> - </citations> - </xml> + </citation> + </citations> + </xml> <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token> </macros>
--- a/vcfbedintersect.xml Mon Mar 26 12:12:01 2018 -0400 +++ b/vcfbedintersect.xml Thu Jan 23 12:53:46 2020 +0000 @@ -7,9 +7,9 @@ <expand macro="stdio" /> <command> #if str($bed_vs_interval.bed_vs_interval_selector) == "bed": - vcfintersect -b "${bed_vs_interval.bed_input}" ${invert} "${vcf_input}" > "${out_file1}" + vcfintersect -b '${bed_vs_interval.bed_input}' ${invert} '${vcf_input}' > '${out_file1}' #else: - vcfintersect -R "${bed_vs_interval.int_input}" ${invert} "${vcf_input}" > "${out_file1}" + vcfintersect -R '${bed_vs_interval.int_input}' ${invert} '${vcf_input}' > '${out_file1}' #end if </command> <inputs>