Mercurial > repos > devteam > vcfbedintersect

diff vcfbedintersect.xml @ 3:67ec5bcc35ec draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfbedintersect commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 12:53:46 +0000
parents b886d025cc05
children
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line diff
--- a/vcfbedintersect.xml	Mon Mar 26 12:12:01 2018 -0400
+++ b/vcfbedintersect.xml	Thu Jan 23 12:53:46 2020 +0000
@@ -7,9 +7,9 @@
     <expand macro="stdio" />
     <command>
         #if str($bed_vs_interval.bed_vs_interval_selector) == "bed":
-            vcfintersect -b "${bed_vs_interval.bed_input}" ${invert} "${vcf_input}" > "${out_file1}"
+            vcfintersect -b '${bed_vs_interval.bed_input}' ${invert} '${vcf_input}' > '${out_file1}'
         #else:
-            vcfintersect -R "${bed_vs_interval.int_input}" ${invert} "${vcf_input}" > "${out_file1}"
+            vcfintersect -R '${bed_vs_interval.int_input}' ${invert} '${vcf_input}' > '${out_file1}'
         #end if
     </command>
     <inputs>