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annotate vcfaddinfo.xml @ 2:b9e24dacef7a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfaddinfo commit c2af291b241e37e0a55adbc1fc72a9fa37d93582
author iuc
date Mon, 26 Mar 2018 12:10:48 -0400
parents 2290bd5707fe
children 3d1c1e157b07
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b9e24dacef7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfaddinfo commit c2af291b241e37e0a55adbc1fc72a9fa37d93582
iuc
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1 <tool id="vcfaddinfo" name="VCFaddinfo:" version="@WRAPPER_VERSION@+galaxy0">
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devteam
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2 <description>Adds info fields from the second dataset which are not present in the first dataset</description>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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3 <macros>
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devteam
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4 <import>macros.xml</import>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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5 </macros>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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6 <expand macro="requirements"></expand>
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devteam
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7 <expand macro="stdio" />
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devteam
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8 <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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9 <inputs>
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devteam
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10 <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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11 <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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12 </inputs>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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13 <outputs>
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14 <data format="vcf" name="out_file1" />
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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15 </outputs>
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devteam
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16 <tests>
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17 <test>
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18 <param name="input1" value="vcfaddinfo-input1.vcf"/>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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19 <param name="input2" value="vcflib.vcf"/>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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20 <output name="out_file1" file="vcfaddinfo-test1.vcf" />
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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21 </test>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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22 </tests>
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23 <help>
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2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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25 Adds info fields from the second dataset which are not present in the first dataset.
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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27 -----
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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29 Vcfaddinfo @IS_PART_OF_VCFLIB@
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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30 </help>
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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31 <expand macro="citations" />
2290bd5707fe planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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32 </tool>