Mercurial > repos > devteam > variant_select
changeset 1:96de2494d113 draft default tip
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
| author | devteam |
|---|---|
| date | Tue, 13 Oct 2015 12:48:40 -0400 |
| parents | 0ac94ceefd33 |
| children | |
| files | tool_dependencies.xml variant_select.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Apr 01 09:12:14 2014 -0400 +++ b/tool_dependencies.xml Tue Oct 13 12:48:40 2015 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="gatk" version="1.4"> - <repository changeset_revision="0cc94f66d00e" name="package_gatk_1_4" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="0cc94f66d00e" name="package_gatk_1_4" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>
--- a/variant_select.xml Tue Apr 01 09:12:14 2014 -0400 +++ b/variant_select.xml Tue Oct 13 12:48:40 2015 -0400 @@ -1,4 +1,4 @@ -<tool id="gatk_variant_select" name="Select Variants" version="0.0.2"> +<tool id="gatk_variant_select" name="Select Variants" version="0.0.3"> <description>from VCF files</description> <requirements> <requirement type="package" version="1.4">gatk</requirement> @@ -154,7 +154,7 @@ <param name="sample_file" type="data" format="txt" label="File containing a list of samples (one per line) to include" /> </repeat> - <param name="input_keep_ids" type="data" format="text" label="Only emit sites whose ID is found in this file" optional="True" help="-IDs,--keepIDs &lt;keepIDs&gt;"/> + <param name="input_keep_ids" type="data" format="txt" label="Only emit sites whose ID is found in this file" optional="True" help="-IDs,--keepIDs &lt;keepIDs&gt;"/> <param name="keep_original_AC" type="boolean" truevalue="--keepOriginalAC" falsevalue="" label="Don't update the AC, AF, or AN values in the INFO field after selecting" help="-keepOriginalAC,--keepOriginalAC" />