Mercurial > repos > devteam > unified_genotyper
changeset 0:9c827306417a draft default tip
Imported from capsule None
| author | devteam |
|---|---|
| date | Tue, 01 Apr 2014 09:12:01 -0400 |
| parents | |
| children | |
| files | gatk_macros.xml gatk_wrapper.py test-data/1.bam test-data/1.vcf test-data/a.tab test-data/gatk/fake_phiX_variant_locations.vcf test-data/gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.bam test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.metrics test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.vcf test-data/phiX.fasta tool-data/gatk_annotations.txt.sample tool-data/gatk_sorted_picard_index.loc.sample tool_data_table_conf.xml.sample tool_dependencies.xml unified_genotyper.xml |
| diffstat | 16 files changed, 18349 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gatk_macros.xml Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,305 @@ +<macros> + <template name="standard_gatk_options"> + ##start standard gatk options + #if $gatk_param_type.gatk_param_type_selector == "advanced": + #for $pedigree in $gatk_param_type.pedigree: + -p '--pedigree "${pedigree.pedigree_file}"' + #end for + #for $pedigree_string in $gatk_param_type.pedigree_string_repeat: + -p '--pedigreeString "${pedigree_string.pedigree_string}"' + #end for + -p '--pedigreeValidationType "${gatk_param_type.pedigree_validation_type}"' + #for $read_filter in $gatk_param_type.read_filter: + -p '--read_filter "${read_filter.read_filter_type.read_filter_type_selector}" + ###raise Exception( str( dir( $read_filter ) ) ) + #for $name, $param in $read_filter.read_filter_type.iteritems(): + #if $name not in [ "__current_case__", "read_filter_type_selector" ]: + #if hasattr( $param.input, 'truevalue' ): + ${param} + #else: + --${name} "${param}" + #end if + #end if + #end for + ' + #end for + #for $interval_count, $input_intervals in enumerate( $gatk_param_type.input_interval_repeat ): + -d "--intervals" "${input_intervals.input_intervals}" "${input_intervals.input_intervals.ext}" "input_intervals_${interval_count}" + #end for + + #for $interval_count, $input_intervals in enumerate( $gatk_param_type.input_exclude_interval_repeat ): + -d "--excludeIntervals" "${input_intervals.input_exclude_intervals}" "${input_intervals.input_exclude_intervals.ext}" "input_exlude_intervals_${interval_count}" + #end for + + -p '--interval_set_rule "${gatk_param_type.interval_set_rule}"' + + -p '--downsampling_type "${gatk_param_type.downsampling_type.downsampling_type_selector}"' + #if str( $gatk_param_type.downsampling_type.downsampling_type_selector ) != "NONE": + -p '--${gatk_param_type.downsampling_type.downsample_to_type.downsample_to_type_selector} "${gatk_param_type.downsampling_type.downsample_to_type.downsample_to_value}"' + #end if + -p ' + --baq "${gatk_param_type.baq}" + --baqGapOpenPenalty "${gatk_param_type.baq_gap_open_penalty}" + ${gatk_param_type.use_original_qualities} + --defaultBaseQualities "${gatk_param_type.default_base_qualities}" + --validation_strictness "${gatk_param_type.validation_strictness}" + --interval_merging "${gatk_param_type.interval_merging}" + ${gatk_param_type.disable_experimental_low_memory_sharding} + ${gatk_param_type.non_deterministic_random_seed} + ' + #for $rg_black_list_count, $rg_black_list in enumerate( $gatk_param_type.read_group_black_list_repeat ): + #if $rg_black_list.read_group_black_list_type.read_group_black_list_type_selector == "file": + -d "--read_group_black_list" "${rg_black_list.read_group_black_list_type.read_group_black_list}" "txt" "input_read_group_black_list_${rg_black_list_count}" + #else + -p '--read_group_black_list "${rg_black_list.read_group_black_list_type.read_group_black_list}"' + #end if + #end for + #end if + + #if str( $reference_source.reference_source_selector ) == "history": + -d "-R" "${reference_source.ref_file}" "${reference_source.ref_file.ext}" "gatk_input" + #end if + ##end standard gatk options + </template> + <xml name="gatk_param_type_conditional"> + <conditional name="gatk_param_type"> + <param name="gatk_param_type_selector" type="select" label="Basic or Advanced GATK options"> + <option value="basic" selected="True">Basic</option> + <option value="advanced">Advanced</option> + </param> + <when value="basic"> + <!-- Do nothing here --> + </when> + <when value="advanced"> + <repeat name="pedigree" title="Pedigree file" help="-ped,--pedigree &lt;pedigree&gt;"> + <param name="pedigree_file" type="data" format="txt" label="Pedigree files for samples"/> + </repeat> + <repeat name="pedigree_string_repeat" title="Pedigree string" help="-pedString,--pedigreeString &lt;pedigreeString&gt;"> + <param name="pedigree_string" type="text" value="" label="Pedigree string for samples"/> + </repeat> + <param name="pedigree_validation_type" type="select" label="How strict should we be in validating the pedigree information" help="-pedValidationType,--pedigreeValidationType &lt;pedigreeValidationType&gt;"> + <option value="STRICT" selected="True">STRICT</option> + <option value="SILENT">SILENT</option> + </param> + <repeat name="read_filter" title="Read Filter" help="-rf,--read_filter &lt;read_filter&gt;"> + <conditional name="read_filter_type"> + <param name="read_filter_type_selector" type="select" label="Read Filter Type"> + <option value="BadCigar">BadCigar</option> + <option value="BadMate">BadMate</option> + <option value="DuplicateRead">DuplicateRead</option> + <option value="FailsVendorQualityCheck">FailsVendorQualityCheck</option> + <option value="MalformedRead">MalformedRead</option> + <option value="MappingQuality">MappingQuality</option> + <option value="MappingQualityUnavailable">MappingQualityUnavailable</option> + <option value="MappingQualityZero">MappingQualityZero</option> + <option value="MateSameStrand">MateSameStrand</option> + <option value="MaxInsertSize">MaxInsertSize</option> + <option value="MaxReadLength" selected="True">MaxReadLength</option> + <option value="MissingReadGroup">MissingReadGroup</option> + <option value="NoOriginalQualityScores">NoOriginalQualityScores</option> + <option value="NotPrimaryAlignment">NotPrimaryAlignment</option> + <option value="Platform454">Platform454</option> + <option value="Platform">Platform</option> + <option value="PlatformUnit">PlatformUnit</option> + <option value="ReadGroupBlackList">ReadGroupBlackList</option> + <option value="ReadName">ReadName</option> + <option value="ReadStrand">ReadStrand</option> + <option value="ReassignMappingQuality">ReassignMappingQuality</option> + <option value="Sample">Sample</option> + <option value="SingleReadGroup">SingleReadGroup</option> + <option value="UnmappedRead">UnmappedRead</option> + </param> + <when value="BadCigar"> + <!-- no extra options --> + </when> + <when value="BadMate"> + <!-- no extra options --> + </when> + <when value="DuplicateRead"> + <!-- no extra options --> + </when> + <when value="FailsVendorQualityCheck"> + <!-- no extra options --> + </when> + <when value="MalformedRead"> + <!-- no extra options --> + </when> + <when value="MappingQuality"> + <param name="min_mapping_quality_score" type="integer" value="10" label="Minimum read mapping quality required to consider a read for calling"/> + </when> + <when value="MappingQualityUnavailable"> + <!-- no extra options --> + </when> + <when value="MappingQualityZero"> + <!-- no extra options --> + </when> + <when value="MateSameStrand"> + <!-- no extra options --> + </when> + <when value="MaxInsertSize"> + <param name="maxInsertSize" type="integer" value="1000000" label="Discard reads with insert size greater than the specified value"/> + </when> + <when value="MaxReadLength"> + <param name="maxReadLength" type="integer" value="76" label="Max Read Length"/> + </when> + <when value="MissingReadGroup"> + <!-- no extra options --> + </when> + <when value="NoOriginalQualityScores"> + <!-- no extra options --> + </when> + <when value="NotPrimaryAlignment"> + <!-- no extra options --> + </when> + <when value="Platform454"> + <!-- no extra options --> + </when> + <when value="Platform"> + <param name="PLFilterName" type="text" value="" label="Discard reads with RG:PL attribute containing this string"/> + </when> + <when value="PlatformUnit"> + <!-- no extra options --> + </when> + <when value="ReadGroupBlackList"> + <!-- no extra options --> + </when> + <when value="ReadName"> + <param name="readName" type="text" value="" label="Filter out all reads except those with this read name"/> + </when> + <when value="ReadStrand"> + <param name="filterPositive" type="boolean" truevalue="--filterPositive" falsevalue="" label="Discard reads on the forward strand"/> + </when> + <when value="ReassignMappingQuality"> + <param name="default_mapping_quality" type="integer" value="60" label="Default read mapping quality to assign to all reads"/> + </when> + <when value="Sample"> + <param name="sample_to_keep" type="text" value="" label="The name of the sample(s) to keep, filtering out all others"/> + </when> + <when value="SingleReadGroup"> + <param name="read_group_to_keep" type="integer" value="76" label="The name of the read group to keep, filtering out all others"/> + </when> + <when value="UnmappedRead"> + <!-- no extra options --> + </when> + </conditional> + </repeat> + <repeat name="input_interval_repeat" title="Operate on Genomic intervals" help="-L,--intervals &lt;intervals&gt;"> + <param name="input_intervals" type="data" format="bed,gatk_interval,picard_interval_list,vcf" label="Genomic intervals" /> + </repeat> + <repeat name="input_exclude_interval_repeat" title="Exclude Genomic intervals" help="-XL,--excludeIntervals &lt;excludeIntervals&gt;"> + <param name="input_exclude_intervals" type="data" format="bed,gatk_interval,picard_interval_list,vcf" label="Genomic intervals" /> + </repeat> + + <param name="interval_set_rule" type="select" label="Interval set rule" help="-isr,--interval_set_rule &lt;interval_set_rule&gt;"> + <option value="UNION" selected="True">UNION</option> + <option value="INTERSECTION">INTERSECTION</option> + </param> + + <conditional name="downsampling_type"> + <param name="downsampling_type_selector" type="select" label="Type of reads downsampling to employ at a given locus" help="-dt,--downsampling_type &lt;downsampling_type&gt;"> + <option value="NONE" selected="True">NONE</option> + <option value="ALL_READS">ALL_READS</option> + <option value="BY_SAMPLE">BY_SAMPLE</option> + </param> + <when value="NONE"> + <!-- no more options here --> + </when> + <when value="ALL_READS"> + <conditional name="downsample_to_type"> + <param name="downsample_to_type_selector" type="select" label="Downsample method"> + <option value="downsample_to_fraction" selected="True">Downsample by Fraction</option> + <option value="downsample_to_coverage">Downsample by Coverage</option> + </param> + <when value="downsample_to_fraction"> + <param name="downsample_to_value" type="float" label="Fraction [0.0-1.0] of reads to downsample to" value="1" min="0" max="1" help="-dfrac,--downsample_to_fraction &lt;downsample_to_fraction&gt;"/> + </when> + <when value="downsample_to_coverage"> + <param name="downsample_to_value" type="integer" label="Coverage to downsample to at any given locus" value="0" help="-dcov,--downsample_to_coverage &lt;downsample_to_coverage&gt;"/> + </when> + </conditional> + </when> + <when value="BY_SAMPLE"> + <conditional name="downsample_to_type"> + <param name="downsample_to_type_selector" type="select" label="Downsample method"> + <option value="downsample_to_fraction" selected="True">Downsample by Fraction</option> + <option value="downsample_to_coverage">Downsample by Coverage</option> + </param> + <when value="downsample_to_fraction"> + <param name="downsample_to_value" type="float" label="Fraction [0.0-1.0] of reads to downsample to" value="1" min="0" max="1" help="-dfrac,--downsample_to_fraction &lt;downsample_to_fraction&gt;"/> + </when> + <when value="downsample_to_coverage"> + <param name="downsample_to_value" type="integer" label="Coverage to downsample to at any given locus" value="0" help="-dcov,--downsample_to_coverage &lt;downsample_to_coverage&gt;"/> + </when> + </conditional> + </when> + </conditional> + <param name="baq" type="select" label="Type of BAQ calculation to apply in the engine" help="-baq,--baq &lt;baq&gt;"> + <option value="OFF" selected="True">OFF</option> + <option value="CALCULATE_AS_NECESSARY">CALCULATE_AS_NECESSARY</option> + <option value="RECALCULATE">RECALCULATE</option> + </param> + <param name="baq_gap_open_penalty" type="float" label="BAQ gap open penalty (Phred Scaled)" value="40" help="Default value is 40. 30 is perhaps better for whole genome call sets. -baqGOP,--baqGapOpenPenalty &lt;baqGapOpenPenalty&gt;" /> + <param name="use_original_qualities" type="boolean" truevalue="--useOriginalQualities" falsevalue="" label="Use the original base quality scores from the OQ tag" help="-OQ,--useOriginalQualities" /> + <param name="default_base_qualities" type="integer" label="Value to be used for all base quality scores, when some are missing" value="-1" help="-DBQ,--defaultBaseQualities &lt;defaultBaseQualities&gt;"/> + <param name="validation_strictness" type="select" label="How strict should we be with validation" help="-S,--validation_strictness &lt;validation_strictness&gt;"> + <option value="STRICT" selected="True">STRICT</option> + <option value="LENIENT">LENIENT</option> + <option value="SILENT">SILENT</option> + <!-- <option value="DEFAULT_STRINGENCY">DEFAULT_STRINGENCY</option> listed in docs, but not valid value...--> + </param> + <param name="interval_merging" type="select" label="Interval merging rule" help="-im,--interval_merging &lt;interval_merging&gt;"> + <option value="ALL" selected="True">ALL</option> + <option value="OVERLAPPING_ONLY">OVERLAPPING_ONLY</option> + </param> + + <repeat name="read_group_black_list_repeat" title="Read group black list" help="-rgbl,--read_group_black_list &lt;read_group_black_list&gt;"> + <conditional name="read_group_black_list_type"> + <param name="read_group_black_list_type_selector" type="select" label="Type of reads read group black list"> + <option value="file" selected="True">Filters in file</option> + <option value="text">Specify filters as a string</option> + </param> + <when value="file"> + <param name="read_group_black_list" type="data" format="txt" label="Read group black list file" /> + </when> + <when value="text"> + <param name="read_group_black_list" type="text" value="tag:string" label="Read group black list tag:string" /> + </when> + </conditional> + </repeat> + + <param name="disable_experimental_low_memory_sharding" type="boolean" truevalue="--disable_experimental_low_memory_sharding" falsevalue="" label="Disable experimental low-memory sharding functionality." checked="False" help="--disable_experimental_low_memory_sharding"/> + <param name="non_deterministic_random_seed" type="boolean" truevalue="--nonDeterministicRandomSeed" falsevalue="" label="Makes the GATK behave non deterministically, that is, the random numbers generated will be different in every run" checked="False" help="-ndrs,--nonDeterministicRandomSeed"/> + + </when> + </conditional> + </xml> + <xml name="analysis_type_conditional"> + <conditional name="analysis_param_type"> + <param name="analysis_param_type_selector" type="select" label="Basic or Advanced Analysis options"> + <option value="basic" selected="True">Basic</option> + <option value="advanced">Advanced</option> + </param> + <when value="basic"> + <!-- Do nothing here --> + </when> + <when value="advanced"> + <yield /> + </when> + </conditional> + </xml> + <xml name="reference_source_selector_param"> + <param name="reference_source_selector" type="select" label="Choose the source for the reference list"> + <option value="cached">Locally cached</option> + <option value="history">History</option> + </param> + </xml> + <token name="@CITATION_SECTION@">------ + +**Citation** + +For the underlying tool, please cite `DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011 May;43(5):491-8. <http://www.ncbi.nlm.nih.gov/pubmed/21478889>`_ + +If you use this tool in Galaxy, please cite Blankenberg D, et al. *In preparation.* + + </token> +</macros> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gatk_wrapper.py Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,126 @@ +#!/usr/bin/env python +#Dan Blankenberg + +""" +A wrapper script for running the GenomeAnalysisTK.jar commands. +""" + +import sys, optparse, os, tempfile, subprocess, shutil +from binascii import unhexlify +from string import Template + +GALAXY_EXT_TO_GATK_EXT = { 'gatk_interval':'intervals', 'bam_index':'bam.bai', 'gatk_dbsnp':'dbSNP', 'picard_interval_list':'interval_list' } #items not listed here will use the galaxy extension as-is +GALAXY_EXT_TO_GATK_FILE_TYPE = GALAXY_EXT_TO_GATK_EXT #for now, these are the same, but could be different if needed +DEFAULT_GATK_PREFIX = "gatk_file" +CHUNK_SIZE = 2**20 #1mb + + +def cleanup_before_exit( tmp_dir ): + if tmp_dir and os.path.exists( tmp_dir ): + shutil.rmtree( tmp_dir ) + +def gatk_filename_from_galaxy( galaxy_filename, galaxy_ext, target_dir = None, prefix = None ): + suffix = GALAXY_EXT_TO_GATK_EXT.get( galaxy_ext, galaxy_ext ) + if prefix is None: + prefix = DEFAULT_GATK_PREFIX + if target_dir is None: + target_dir = os.getcwd() + gatk_filename = os.path.join( target_dir, "%s.%s" % ( prefix, suffix ) ) + os.symlink( galaxy_filename, gatk_filename ) + return gatk_filename + +def gatk_filetype_argument_substitution( argument, galaxy_ext ): + return argument % dict( file_type = GALAXY_EXT_TO_GATK_FILE_TYPE.get( galaxy_ext, galaxy_ext ) ) + +def open_file_from_option( filename, mode = 'rb' ): + if filename: + return open( filename, mode = mode ) + return None + +def html_report_from_directory( html_out, dir ): + html_out.write( '<html>\n<head>\n<title>Galaxy - GATK Output</title>\n</head>\n<body>\n<p/>\n<ul>\n' ) + for fname in sorted( os.listdir( dir ) ): + html_out.write( '<li><a href="%s">%s</a></li>\n' % ( fname, fname ) ) + html_out.write( '</ul>\n</body>\n</html>\n' ) + +def index_bam_files( bam_filenames, tmp_dir ): + for bam_filename in bam_filenames: + bam_index_filename = "%s.bai" % bam_filename + if not os.path.exists( bam_index_filename ): + #need to index this bam file + stderr_name = tempfile.NamedTemporaryFile( prefix = "bam_index_stderr" ).name + command = 'samtools index %s %s' % ( bam_filename, bam_index_filename ) + proc = subprocess.Popen( args=command, shell=True, stderr=open( stderr_name, 'wb' ) ) + return_code = proc.wait() + if return_code: + for line in open( stderr_name ): + print >> sys.stderr, line + os.unlink( stderr_name ) #clean up + cleanup_before_exit( tmp_dir ) + raise Exception( "Error indexing BAM file" ) + os.unlink( stderr_name ) #clean up + +def __main__(): + #Parse Command Line + parser = optparse.OptionParser() + parser.add_option( '-p', '--pass_through', dest='pass_through_options', action='append', type="string", help='These options are passed through directly to GATK, without any modification.' ) + parser.add_option( '-o', '--pass_through_options', dest='pass_through_options_encoded', action='append', type="string", help='These options are passed through directly to GATK, with decoding from binascii.unhexlify.' ) + parser.add_option( '-d', '--dataset', dest='datasets', action='append', type="string", nargs=4, help='"-argument" "original_filename" "galaxy_filetype" "name_prefix"' ) + parser.add_option( '', '--max_jvm_heap', dest='max_jvm_heap', action='store', type="string", default=None, help='If specified, the maximum java virtual machine heap size will be set to the provide value.' ) + parser.add_option( '', '--max_jvm_heap_fraction', dest='max_jvm_heap_fraction', action='store', type="int", default=None, help='If specified, the maximum java virtual machine heap size will be set to the provide value as a fraction of total physical memory.' ) + parser.add_option( '', '--stdout', dest='stdout', action='store', type="string", default=None, help='If specified, the output of stdout will be written to this file.' ) + parser.add_option( '', '--stderr', dest='stderr', action='store', type="string", default=None, help='If specified, the output of stderr will be written to this file.' ) + parser.add_option( '', '--html_report_from_directory', dest='html_report_from_directory', action='append', type="string", nargs=2, help='"Target HTML File" "Directory"') + (options, args) = parser.parse_args() + + tmp_dir = tempfile.mkdtemp( prefix='tmp-gatk-' ) + if options.pass_through_options: + cmd = ' '.join( options.pass_through_options ) + else: + cmd = '' + if options.pass_through_options_encoded: + cmd = '%s %s' % ( cmd, ' '.join( map( unhexlify, options.pass_through_options_encoded ) ) ) + if options.max_jvm_heap is not None: + cmd = cmd.replace( 'java ', 'java -Xmx%s ' % ( options.max_jvm_heap ), 1 ) + elif options.max_jvm_heap_fraction is not None: + cmd = cmd.replace( 'java ', 'java -XX:DefaultMaxRAMFraction=%s -XX:+UseParallelGC ' % ( options.max_jvm_heap_fraction ), 1 ) + bam_filenames = [] + if options.datasets: + for ( dataset_arg, filename, galaxy_ext, prefix ) in options.datasets: + gatk_filename = gatk_filename_from_galaxy( filename, galaxy_ext, target_dir = tmp_dir, prefix = prefix ) + if dataset_arg: + cmd = '%s %s "%s"' % ( cmd, gatk_filetype_argument_substitution( dataset_arg, galaxy_ext ), gatk_filename ) + if galaxy_ext == "bam": + bam_filenames.append( gatk_filename ) + index_bam_files( bam_filenames, tmp_dir ) + #set up stdout and stderr output options + stdout = open_file_from_option( options.stdout, mode = 'wb' ) + stderr = open_file_from_option( options.stderr, mode = 'wb' ) + #if no stderr file is specified, we'll use our own + if stderr is None: + stderr = tempfile.NamedTemporaryFile( prefix="gatk-stderr-", dir=tmp_dir ) + + proc = subprocess.Popen( args=cmd, stdout=stdout, stderr=stderr, shell=True, cwd=tmp_dir ) + return_code = proc.wait() + + if return_code: + stderr_target = sys.stderr + else: + stderr_target = sys.stdout + stderr.flush() + stderr.seek(0) + while True: + chunk = stderr.read( CHUNK_SIZE ) + if chunk: + stderr_target.write( chunk ) + else: + break + stderr.close() + #generate html reports + if options.html_report_from_directory: + for ( html_filename, html_dir ) in options.html_report_from_directory: + html_report_from_directory( open( html_filename, 'wb' ), html_dir ) + + cleanup_before_exit( tmp_dir ) + +if __name__=="__main__": __main__()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/1.vcf Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,17302 @@ +##fileformat=VCFv4.0 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT chr10 chr11 +chr10 66922 . T A 15.1 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=60 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 131337 . A G 56.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 89,12,0:4:0:1/1:72 +chr10 170654 . CTCT CTCTCTTTCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 209855 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 217843 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 255907 . T G 19.1 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=18,6,0,9;MQ=49;PV4=0.00013,0.00033,0.033,0.2 PL:DP:SP:GT:GQ 49,0,255:33:39:0/1:52 +chr10 282021 . AC ACCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 282897 . C T 60 . DP=15;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 93,33,0:11:0:1/1:99 +chr10 292927 . C A 5.29 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 294953 . A G 11.3 . DP=20;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,4,0;MQ=50;PV4=1,0.13,0.27,1 PL:DP:SP:GT:GQ 41,0,27:6:0:0/1:30 +chr10 297512 . T TCTATAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 299253 . T C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 300784 . G GTGTCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 302656 . C T 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr10 316660 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 323283 . A G 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=7,7,4,9;MQ=49;PV4=0.44,1.1e-05,0.0014,1 PL:DP:SP:GT:GQ 154,0,255:27:4:0/1:99 +chr10 329097 . C CTG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 329425 . T C 34 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=48;PV4=1,0.38,0.18,0.012 PL:DP:SP:GT:GQ 64,0,54:9:0:0/1:57 +chr10 330706 . A T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 333917 . A C 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 364501 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 370384 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 373048 . T C 68 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=15,12,11,4;MQ=49;PV4=0.33,1.6e-13,0.054,1 PL:DP:SP:GT:GQ 98,0,255:42:5:0/1:99 +chr10 387060 . G A 34.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 67,18,0:6:0:1/1:90 +chr10 388388 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 394714 . G A 20.1 . DP=23;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,2,1;MQ=47;PV4=0.4,1,0.043,1 PL:DP:SP:GT:GQ 50,0,28:5:4:0/1:31 +chr10 395266 . T C 6.79 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 395463 . G A 38 . DP=32;AF1=1;CI95=1,1;DP4=0,1,0,27;MQ=50;PV4=1,0.00028,0.37,1 PL:DP:SP:GT:GQ 71,53,0:28:0:1/1:99 +chr10 415897 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 427441 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 429977 . G A 20 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=10,4,7,2;MQ=50;PV4=1,1.1e-14,1,1 PL:DP:SP:GT:GQ 50,0,255:23:0:0/1:53 +chr10 430502 . C G 14.2 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=4,12,8,0;MQ=49;PV4=0.0013,0.00012,0.012,1 PL:DP:SP:GT:GQ 44,0,255:24:29:0/1:47 +chr10 436010 . A G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr10 443775 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 444997 . C T 7.77 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 445061 . C T 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,22,7;MQ=47 PL:DP:SP:GT:GQ 255,87,0:29:0:1/1:99 +chr10 459773 . A G 3.01 . DP=6;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,0.14,0.0034,1 PL:DP:SP:GT:GQ 30,0,83:5:0:0/1:33 +chr10 459940 . G A 36.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 69,12,0:4:0:1/1:72 +chr10 468854 . TGGAG TCACTCAGAGAGGAG 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 518547 . ACTCT ACT 99 . INDEL;DP=18;AF1=1;CI95=1,1;DP4=0,0,0,15;MQ=50 PL:DP:SP:GT:GQ 249,45,0:15:0:1/1:99 +chr10 533406 . A AGAGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 537741 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 555578 . GAG GAGAAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 569693 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 602486 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 610506 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 617928 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 667505 . A T 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,36:2:0:0/1:34 +chr10 668181 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 706998 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 731058 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 739952 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 752193 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 752862 . cc cCAc 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 758105 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 758483 . T TGTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 835606 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 922988 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 941722 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 945698 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 1042023 . a aAAC 52.2 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 91,6,0:2:0:1/1:49 +chr10 1043221 . T A 6.2 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,1,1;MQ=49;PV4=1,1,0.056,0.31 PL:DP:SP:GT:GQ 35,0,50:5:0:0/1:38 +chr10 1052950 . G A 83 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=16,0,10,0;MQ=48;PV4=1,8.3e-05,7.4e-07,1 PL:DP:SP:GT:GQ 113,0,228:26:0:0/1:99 +chr10 1056310 . G C 79 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=47;PV4=1,0.039,0.00012,0.43 PL:DP:SP:GT:GQ 109,0,126:9:0:0/1:99 +chr10 1061862 . A G 37 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=2,21,5,3;MQ=49;PV4=0.0056,3.9e-07,3e-06,1 PL:DP:SP:GT:GQ 67,0,255:31:22:0/1:70 +chr10 1070461 . C T 16.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,0.036,0.25,1 PL:DP:SP:GT:GQ 46,0,38:4:0:0/1:40 +chr10 1070710 . C G 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=1,13,1,18;MQ=48;PV4=1,4e-05,0.0011,1 PL:DP:SP:GT:GQ 147,0,215:33:0:0/1:99 +chr10 1076659 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1089274 . G C 3.07 . DP=4;AF1=0.5126;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.41,0.33,1 PL:DP:SP:GT:GQ 30,0,13:3:0:0/1:16 +chr10 1090111 . A G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1110855 . a aCTAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1115494 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 1128904 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1142208 . T C 64 . DP=39;AF1=1;CI95=1,1;DP4=1,1,0,33;MQ=49;PV4=0.057,0.013,0.26,1 PL:DP:SP:GT:GQ 97,46,0:35:0:1/1:99 +chr10 1150928 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1160913 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1167722 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 1170304 . C G 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=3,14,4,11;MQ=48;PV4=0.68,3.3e-09,0.00038,0.49 PL:DP:SP:GT:GQ 171,0,255:32:2:0/1:99 +chr10 1195036 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1204080 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1204947 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 1230744 . G A 3.57 . DP=5;AF1=0.5048;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.24,0.33,1 PL:DP:SP:GT:GQ 31,0,17:3:0:0/1:20 +chr10 1230968 . C T 8.64 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,3;MQ=49;PV4=0.1,0.00042,0.25,1 PL:DP:SP:GT:GQ 38,0,77:5:10:0/1:41 +chr10 1254961 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1263553 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 1283529 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1310456 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1350849 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1352573 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 1352644 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1353236 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1373459 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1421219 . A C 12.3 . DP=12;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 42,0,25:5:0:0/1:28 +chr10 1433275 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1489768 . G A 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 1489779 . A C,T 4.61 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 42,14,33,8,0,33:3:0:1/1:49 +chr10 1490725 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1497258 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 1518317 . G GACGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1523964 . a aCCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 1527079 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 1548264 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 1558548 . TC TCGAC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 1605240 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 1611361 . T G 3.55 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 1623213 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 1645868 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 1651015 . G GTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1695429 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1703265 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 1711741 . C CCCTATTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1721206 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1731544 . a aTATTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1737777 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 1749500 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 1761488 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1817221 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 1852754 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1852973 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 1864370 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1898737 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1898746 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1914304 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 1915241 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1924253 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1933036 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1984951 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2017468 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 2022889 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 2036480 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2051564 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2053274 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2076529 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2095607 . AGGTG A 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 2113136 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 2114416 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2136360 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2197980 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2232715 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 2241737 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 2247878 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 2337671 . A ACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2355472 . g gCTACAGC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 2356045 . C CCTTAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2372111 . gg gGCGTATg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2395355 . T G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2407844 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 2498965 . C CCTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2508018 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 2520704 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2556292 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2588027 . T A 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2596929 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2624329 . G C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 2663483 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 2663892 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 2706224 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 2714085 . G C 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr10 2729351 . CTT CTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2734777 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 2742346 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 2748997 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2751235 . a aTGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2756672 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2796523 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 2842254 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 2879429 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 2899820 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 2919978 . T C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 2923945 . A T,G 3.41 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 36,10,31,4,0,31:3:0:1/1:49 +chr10 2929732 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 2950233 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2952487 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2952601 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 2955146 . a aGACGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2957192 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2963110 . G GACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2964207 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2985557 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3023958 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3054036 . T C 52.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 85,18,0:6:0:1/1:90 +chr10 3056560 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3063846 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3068551 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 3075387 . AG AGAGG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 3080755 . c cTGAGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 3101616 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 3112082 . T TCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 3119862 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3120010 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 3124516 . G A 5.29 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 3143643 . A C 11.3 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr10 3145906 . A C 60 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=7,0,6,0;MQ=47;PV4=1,0.0016,0.0043,1 PL:DP:SP:GT:GQ 90,0,174:13:0:0/1:93 +chr10 3146180 . C T 18 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 3149402 . A G 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,9,2;MQ=47 PL:DP:SP:GT:GQ 165,33,0:11:0:1/1:99 +chr10 3150973 . C T 33.2 . DP=42;AF1=0.5263;CI95=0.5,1;DP4=0,1,1,3;MQ=49;PV4=1,0.29,0.25,1 PL:DP:SP:GT:GQ 63,0,10:5:0:0/1:13 +chr10 3155237 . A G 91 . DP=11;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=48 PL:DP:SP:GT:GQ 124,30,0:10:0:1/1:99 +chr10 3155540 . A G 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,9,1;MQ=48 PL:DP:SP:GT:GQ 132,30,0:10:0:1/1:99 +chr10 3155753 . G C 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=45 PL:DP:SP:GT:GQ 133,15,0:5:0:1/1:75 +chr10 3158848 . C T 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr10 3159234 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 3161131 . C T 11.3 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr10 3168373 . G C 8.65 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 3171995 . G T 3.01 . DP=8;AF1=0.4997;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,0.00025,0.14,1 PL:DP:SP:GT:GQ 30,0,135:7:0:0/1:33 +chr10 3172229 . G A 24 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=48;PV4=1,0.0029,0.013,1 PL:DP:SP:GT:GQ 54,0,142:9:0:0/1:57 +chr10 3178815 . G C 39 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,11,0,5;MQ=49;PV4=1,8.8e-05,3.1e-07,1 PL:DP:SP:GT:GQ 69,0,255:17:0:0/1:72 +chr10 3191727 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3206365 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 3212187 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3229964 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3238997 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 3256461 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3266803 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3281251 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 3302979 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3325037 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 3364820 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3367318 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3370814 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3389660 . G GTCTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 3390765 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3424524 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 3434101 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3450171 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3451517 . G GGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 3465444 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3473819 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3474112 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3486595 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3492888 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 3499283 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3521236 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3526792 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3539155 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3584507 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3586349 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3590536 . AAGAGAGAG AAGAGAG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 3606942 . CT CATAAGT 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 3643414 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3660946 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 3694363 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 3694597 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3698288 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 3711002 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 3715278 . T C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=26 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 3716521 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3720097 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3720385 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3743697 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3747686 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3753120 . tgga t 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 3756309 . TAAG T 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 3800996 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3812387 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3835047 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3851381 . T A 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3853849 . GTGT G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 3872341 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 3873419 . A T 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3894179 . A C 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,42:2:0:0/1:34 +chr10 3907121 . GT GTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 3909411 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 3911829 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3913900 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 3931867 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 3935971 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 3938767 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 3956629 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3987365 . A G 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 3992909 . C G 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 4014922 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4017381 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 4031135 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4031735 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4034594 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4049052 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 4049847 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 4053810 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4057160 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4069192 . T TGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4083656 . ct cTGCTTGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4129954 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 4135785 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4171409 . cg cGTGATATCTGTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4174241 . G GTTGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4185639 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 4233710 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4251583 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4276813 . g gTTTTCTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4294415 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4332523 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4360945 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4395806 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4395821 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4420491 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4453877 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4481483 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 4483673 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 4495977 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 4561636 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 4574896 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4577724 . T TCTCAACAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4578308 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4581124 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 4581619 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4613801 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 4692001 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 4711974 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4725899 . g gTGCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4733335 . cG cGTAG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 4753253 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 4788010 . CGG CGGG 13.4 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 4788081 . A ACTCCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 4811809 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4869585 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 4885208 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4892308 . GC GCAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4927603 . G C 7.8 . DP=9;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0,0,0.44 PL:DP:SP:GT:GQ 37,0,28:3:0:0/1:30 +chr10 4929976 . GT GTCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 4958031 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5010913 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 5011048 . A C 4.77 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,3,0;MQ=47;PV4=1,0.016,0.22,1 PL:DP:SP:GT:GQ 33,0,40:4:0:0/1:35 +chr10 5014678 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 5016241 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 5018287 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 5019959 . G A 9.52 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,0.087,0.23,0.12 PL:DP:SP:GT:GQ 39,0,108:5:0:0/1:42 +chr10 5026052 . A G 26 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr10 5037772 . C A 39 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=45;PV4=1,1,0.055,0.41 PL:DP:SP:GT:GQ 69,0,64:6:0:0/1:66 +chr10 5038853 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5041028 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 5042852 . T A 13.2 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,4,2,0;MQ=47;PV4=0.067,0.086,0.0013,1 PL:DP:SP:GT:GQ 43,0,123:6:12:0/1:46 +chr10 5045884 . G GTAGACTT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 5050761 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 5050793 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5079812 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5092192 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5101028 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5112354 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 5123006 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5139685 . G A 50.1 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 83,18,0:6:0:1/1:90 +chr10 5165443 . CT CTT 37.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 75,0,110:9:0:0/1:78 +chr10 5165525 . G A 20.8 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 5165809 . tcac t 6.55 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,44:2:0:0/1:43 +chr10 5175847 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5177350 . G A 35.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 68,12,0:4:0:1/1:72 +chr10 5190458 . ga gAa 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 5200756 . C T 6.98 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,30:2:0:0/1:32 +chr10 5202060 . C T 20 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr10 5242346 . G A 97.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=46 PL:DP:SP:GT:GQ 130,21,0:7:0:1/1:84 +chr10 5249377 . A T 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr10 5249770 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 5249973 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5260611 . TTCACT TT 33.5 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=5,0,2,0;MQ=50;PV4=1,0.00027,1,1 PL:DP:SP:GT:GQ 71,0,160:7:0:0/1:74 +chr10 5260812 . A G 16.1 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr10 5260813 . GCC GCCCC 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5283318 . aaataa aaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5283974 . A C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 5319029 . A AGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 5320897 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 5349776 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 5364097 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 5366794 . G GTGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5384423 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 5385285 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5394537 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5402285 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5409210 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 5416124 . G T 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,5,1,3;MQ=49;PV4=1,0.13,0.009,1 PL:DP:SP:GT:GQ 41,0,152:12:0:0/1:44 +chr10 5416130 . C A 13.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,4;MQ=48;PV4=0.43,0.064,0.036,1 PL:DP:SP:GT:GQ 43,0,80:8:4:0/1:46 +chr10 5435918 . G A 18.1 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=13,10,9,2;MQ=50;PV4=0.25,3.8e-08,0.00094,0.22 PL:DP:SP:GT:GQ 48,0,255:34:6:0/1:51 +chr10 5436273 . C T 21 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=17,6,0,9;MQ=49;PV4=0.00018,2e-07,0.00093,1 PL:DP:SP:GT:GQ 51,0,255:32:37:0/1:54 +chr10 5436462 . T C 6.2 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=47;PV4=1,1,0.3,0.011 PL:DP:SP:GT:GQ 35,0,45:5:0:0/1:38 +chr10 5437365 . A G 16.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=7,8,1,4;MQ=49;PV4=0.6,0.00011,0.047,1 PL:DP:SP:GT:GQ 46,0,255:20:2:0/1:49 +chr10 5455799 . tgga t 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 5459010 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5468709 . T C 14.2 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,4;MQ=50;PV4=1,0.056,0.013,1 PL:DP:SP:GT:GQ 44,0,128:9:0:0/1:47 +chr10 5471122 . T C 5.54 . DP=12;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,1,0.33,0.077 PL:DP:SP:GT:GQ 34,0,13:3:0:0/1:16 +chr10 5471200 . C T 15.1 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr10 5471251 . T G 3.03 . DP=17;AF1=0.5029;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.077,0.33,0.071 PL:DP:SP:GT:GQ 30,0,19:3:0:0/1:22 +chr10 5473242 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5479131 . A ATTTGCCCGAGAACGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5481451 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 5499040 . AT ATT 99 . INDEL;DP=18;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,14;MQ=50;PV4=1,1,1,0.39 PL:DP:SP:GT:GQ 172,0,33:17:0:0/1:36 +chr10 5500026 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 5504879 . c cCAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 5505591 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5542320 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5567366 . G A 92 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,4;MQ=47;PV4=0.44,0.00014,0.00085,1 PL:DP:SP:GT:GQ 122,0,61:9:4:0/1:64 +chr10 5571516 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 5577742 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5578608 . ac aCCGTTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5585992 . tac tACAGac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5602993 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5607598 . T G 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5617452 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5637224 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 5640419 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5640435 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5652173 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5652185 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5652880 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5667066 . C A 19.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr10 5682641 . C T 18.6 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 51,12,0:4:0:1/1:72 +chr10 5683860 . A ANNNNNC 3.25 . INDEL;DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,88:4:0:0/1:41 +chr10 5688395 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5689917 . A T 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 5690879 . G A 28 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,1,3;MQ=42;PV4=0.033,0.046,0.0014,0.43 PL:DP:SP:GT:GQ 58,0,149:10:15:0/1:61 +chr10 5693379 . A G 20.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 5720721 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 5751578 . CTA CTAGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5781628 . T G 29.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 62,12,0:4:0:1/1:72 +chr10 5781969 . A T 99 . DP=51;AF1=1;CI95=1,1;DP4=0,1,23,22;MQ=48;PV4=1,0.3,0.26,1 PL:DP:SP:GT:GQ 254,113,0:46:0:1/1:99 +chr10 5788126 . ACT ACTCAGTGCTCT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 5788608 . G C 70.5 . DP=32;AF1=1;CI95=0.5,1;DP4=1,0,8,0;MQ=48;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 103,12,0:9:0:1/1:72 +chr10 5789325 . T G 21 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,4;MQ=47;PV4=0.17,0.16,0.093,1 PL:DP:SP:GT:GQ 51,0,107:9:8:0/1:54 +chr10 5789966 . CCTGCCTCAGCTGCC CCTGCC 99 . INDEL;DP=49;AF1=0.5;CI95=0.5,0.5;DP4=8,18,6,7;MQ=50;PV4=0.48,0.0023,1,1 PL:DP:SP:GT:GQ 255,0,255:39:3:0/1:99 +chr10 5790420 . T C 99 . DP=51;AF1=1;CI95=1,1;DP4=1,0,17,25;MQ=49;PV4=0.42,0.046,0.29,1 PL:DP:SP:GT:GQ 237,97,0:43:0:1/1:99 +chr10 5790616 . A G 99 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=4,18,4,15;MQ=49;PV4=1,5e-14,0.00042,0.44 PL:DP:SP:GT:GQ 169,0,255:41:0:0/1:99 +chr10 5793899 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5793938 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5798782 . T A 7.59 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 5800811 . A C 25 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,0.038,0.17,1 PL:DP:SP:GT:GQ 55,0,59:6:0:0/1:57 +chr10 5803530 . AA AAGA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5804531 . G A 29.1 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 62,18,0:6:0:1/1:90 +chr10 5804633 . TTC TTCTC 99 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=50;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 145,0,108:9:0:0/1:99 +chr10 5823705 . tg tGCGAGGAg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5828019 . T C 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,0,2;MQ=49;PV4=0.4,1,0.026,0.25 PL:DP:SP:GT:GQ 31,0,50:5:4:0/1:34 +chr10 5828942 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5836286 . C T 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 5872773 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 5874958 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5902105 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5917372 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5925820 . gg gGCTg 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,1;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr10 5925971 . C A 41.5 . DP=45;AF1=0.8277;CI95=0.5,1;DP4=0,1,8,0;MQ=49;PV4=0.11,0.077,0.21,1 PL:DP:SP:GT:GQ 70,0,1:9:0:1/1:5 +chr10 5929962 . G C 18.1 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=3,5,4,3;MQ=50;PV4=0.62,0.0016,0.073,1 PL:DP:SP:GT:GQ 48,0,191:15:2:0/1:51 +chr10 5938195 . TC TCGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 5948657 . C T 63 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,10;MQ=49;PV4=1,4.9e-09,0.0028,1 PL:DP:SP:GT:GQ 93,0,199:19:0:0/1:96 +chr10 5953148 . A G 5.46 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.43,0.21,1 PL:DP:SP:GT:GQ 34,0,35:4:0:0/1:34 +chr10 5953588 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 5967256 . A C 22 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=4,1,5,0;MQ=48;PV4=1,0.0077,0.3,1 PL:DP:SP:GT:GQ 52,0,119:10:0:0/1:55 +chr10 5971969 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5978411 . T C 3.54 . DP=34;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,3;MQ=50;PV4=0.4,0.05,0.25,1 PL:DP:SP:GT:GQ 31,0,37:5:0:0/1:33 +chr10 5982573 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 5989110 . C CTTA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 6013625 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 6056837 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 6060054 . G T 10.4 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=1,19,6,0;MQ=49;PV4=3e-05,9.3e-05,0.00041,1 PL:DP:SP:GT:GQ 40,0,255:26:45:0/1:43 +chr10 6062018 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6063674 . T C 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,0,29;MQ=46 PL:DP:SP:GT:GQ 183,87,0:29:0:1/1:99 +chr10 6091069 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6091333 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 6101041 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 6111851 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6113666 . G A 8.64 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.26,0.0099,0.36 PL:DP:SP:GT:GQ 38,0,57:4:0:0/1:41 +chr10 6114328 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 6115635 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 6124519 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 6148059 . A G 10.5 . DP=11;AF1=0.5163;CI95=0.5,1;DP4=1,0,2,0;MQ=46;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 40,0,12:3:0:0/1:15 +chr10 6154392 . T A,G 5.29 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 48,19,34,13,0,34:3:0:1/1:49 +chr10 6156118 . T C 92 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=48 PL:DP:SP:GT:GQ 125,39,0:13:0:1/1:99 +chr10 6156166 . A ACGGCCGGACC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 6189871 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 6204234 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6211667 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 6212611 . CAAAA CAA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 6258015 . T C 73 . DP=23;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=49 PL:DP:SP:GT:GQ 106,54,0:18:0:1/1:99 +chr10 6258052 . G A 97 . DP=36;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=48 PL:DP:SP:GT:GQ 130,54,0:18:0:1/1:99 +chr10 6258796 . T C 9.31 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 6258840 . GCCC GCC 78.7 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=50 PL:DP:SP:GT:GQ 119,15,0:5:0:1/1:75 +chr10 6259239 . G A 7.83 . DP=21;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.42,1,0.17 PL:DP:SP:GT:GQ 37,0,17:3:0:0/1:20 +chr10 6261704 . T C 14.2 . DP=30;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,1,2;MQ=49;PV4=1,0.13,0.33,1 PL:DP:SP:GT:GQ 44,0,16:4:0:0/1:19 +chr10 6263171 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6267717 . C CAG 38.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 77,6,0:2:0:1/1:49 +chr10 6274422 . G GCAGACCC 7.38 . INDEL;DP=2;AF1=0.504;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr10 6276570 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 6313715 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6335597 . C T 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.023,0.2,0.12 PL:DP:SP:GT:GQ 31,0,106:5:0:0/1:34 +chr10 6335700 . G A 99 . DP=14;AF1=1;CI95=0.5,1;DP4=1,0,7,6;MQ=46;PV4=1,0.27,0.15,1 PL:DP:SP:GT:GQ 204,10,0:14:0:1/1:60 +chr10 6342380 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 6366381 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 6373367 . cg cGGGg 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 6393908 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 6459135 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6467722 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6472685 . T A 3.02 . DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,26:2:0:0/1:28 +chr10 6480173 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 6480254 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6506384 . AA AACA 3.25 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,0.33,1,0.46 PL:DP:SP:GT:GQ 38,0,80:3:0:0/1:41 +chr10 6508703 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 6509248 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6521147 . G A 65 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=48 PL:DP:SP:GT:GQ 98,27,0:9:0:1/1:99 +chr10 6528054 . A G 4.77 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,3,1;MQ=48;PV4=0.14,0.0014,0.18,0.032 PL:DP:SP:GT:GQ 33,0,118:8:8:0/1:36 +chr10 6528069 . C A 14.2 . DP=8;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,0.065,0.26,1 PL:DP:SP:GT:GQ 44,0,28:4:0:0/1:31 +chr10 6533877 . A G 69 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=50 PL:DP:SP:GT:GQ 102,51,0:17:0:1/1:99 +chr10 6539240 . T A 21 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=1,5,1,4;MQ=48;PV4=1,1,0.07,0.23 PL:DP:SP:GT:GQ 51,0,77:11:0:0/1:54 +chr10 6593396 . ccc cCCCCGAcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6614727 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 6624197 . ATTG A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6628630 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6646946 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6667778 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 6682640 . T A 3.02 . DP=2;AF1=0.501;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,23:2:0:0/1:25 +chr10 6690643 . cta cTAACAta 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6691586 . A C,G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 42,15,30,12,0,30:2:0:1/1:41 +chr10 6703009 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 6725954 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 6730785 . TG TGGGAGGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6740930 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6754861 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 6792845 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 6806667 . g gTTCCCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6888002 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6954245 . GT GTCAGTGGAGTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6975121 . T TCTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6975390 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 6993120 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 7007341 . cca cCATACTca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7015143 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 7018447 . ac aCAGGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7031669 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7046145 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 7061643 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 7070475 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 7075395 . TA TAGAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7085152 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7105859 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7123620 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 7125307 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7157289 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 7173098 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7174159 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7196088 . ATCT ATCTCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,42:2:0:0/1:43 +chr10 7205605 . TTCT TTCTCTCTCT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7206067 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 7214659 . TACACACACACA TACACACACA 44.5 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,3;MQ=50;PV4=1,0.13,1,1 PL:DP:SP:GT:GQ 82,0,193:11:0:0/1:85 +chr10 7223321 . ag aGAAGTTGTGCTg 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 7236802 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7239386 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 7285632 . A G 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,2,9;MQ=43 PL:DP:SP:GT:GQ 255,33,0:11:0:1/1:99 +chr10 7289044 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7313439 . tta tTAACta 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7318803 . T C 99 . DP=11;AF1=1;CI95=0.5,1;DP4=1,0,8,0;MQ=45;PV4=1,1,0.017,0.22 PL:DP:SP:GT:GQ 160,5,0:9:0:1/1:46 +chr10 7326305 . GT GTTTAT 7.42 . INDEL;DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr10 7361824 . cag cAGTGag 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7371582 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7375689 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7376814 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 7408103 . GG GGGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7415769 . A AGTTAGAGGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7417928 . CT CTTTCACGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7423960 . T C 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 7431307 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7462134 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 7462539 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7503975 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 7527102 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 7550321 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 7567698 . a aGGGCG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 7596277 . CACG C 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 7605077 . TCC TC 99 . INDEL;DP=27;AF1=1;CI95=1,1;DP4=0,0,11,6;MQ=50 PL:DP:SP:GT:GQ 255,51,0:17:0:1/1:99 +chr10 7605101 . A G 77.1 . DP=28;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=49 PL:DP:SP:GT:GQ 110,21,0:7:0:1/1:84 +chr10 7608419 . T C 11.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=47;PV4=1,0.0074,0.028,1 PL:DP:SP:GT:GQ 41,0,164:9:0:0/1:44 +chr10 7618686 . T G 26.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=50 PL:DP:SP:GT:GQ 59,12,0:4:0:1/1:72 +chr10 7627750 . CT CTAT 5.09 . INDEL;DP=3;AF1=0.5025;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.042 PL:DP:SP:GT:GQ 41,0,20:3:0:0/1:23 +chr10 7638157 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 7641672 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 7659790 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7677798 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 7683289 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 7692140 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7702304 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 7763661 . A G 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,8,8;MQ=49 PL:DP:SP:GT:GQ 161,48,0:16:0:1/1:99 +chr10 7766565 . CG CGCGTGTCCCGCGCACGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7770494 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7773976 . A G 99 . DP=39;AF1=1;CI95=1,1;DP4=0,0,1,21;MQ=44 PL:DP:SP:GT:GQ 255,66,0:22:0:1/1:99 +chr10 7785245 . T G 8.64 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,3;MQ=48;PV4=1,0.26,0.00019,1 PL:DP:SP:GT:GQ 38,0,117:10:0:0/1:41 +chr10 7786065 . CT CTCTTT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=49;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,61:3:0:0/1:44 +chr10 7788495 . T C 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=44 PL:DP:SP:GT:GQ 181,24,0:8:0:1/1:96 +chr10 7801960 . T C 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=0,3,0,1;MQ=47;PV4=1,0.027,0.036,1 PL:DP:SP:GT:GQ 30,0,112:4:0:0/1:33 +chr10 7805774 . A ATCCAGGTTCTT 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 7805778 . TG TGTTCTTCTCG 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,0.48,1,1 PL:DP:SP:GT:GQ 41,0,68:3:0:0/1:44 +chr10 7809300 . AC ACGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 7822169 . C A 9.52 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,4,0,4;MQ=49;PV4=0.21,0.027,0.0074,1 PL:DP:SP:GT:GQ 39,0,199:12:7:0/1:42 +chr10 7851888 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 7852709 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7866268 . C G 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,23,2;MQ=45 PL:DP:SP:GT:GQ 252,75,0:25:0:1/1:99 +chr10 7866557 . T C 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=47 PL:DP:SP:GT:GQ 133,54,0:18:0:1/1:99 +chr10 7872431 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 7875874 . G A 10.4 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,1;MQ=48;PV4=1,0.01,0.24,0.3 PL:DP:SP:GT:GQ 40,0,155:6:0:0/1:43 +chr10 7887601 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7891228 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7899325 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7923728 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7925890 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 7937957 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7978533 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8006644 . A G 36 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=13,0,0,9;MQ=48;PV4=2e-06,3.5e-17,6.7e-07,1 PL:DP:SP:GT:GQ 66,0,230:22:57:0/1:69 +chr10 8006798 . A G 99 . DP=56;AF1=0.6671;CI95=0.5,1;DP4=1,1,6,6;MQ=48;PV4=1,0.4,0.15,1 PL:DP:SP:GT:GQ 136,0,3:14:0:0/1:5 +chr10 8006885 . A G 11.3 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=12,5,0,6;MQ=49;PV4=0.0046,0.00081,0.015,1 PL:DP:SP:GT:GQ 41,0,255:23:23:0/1:44 +chr10 8044177 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 8055615 . G C 40 . DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,1,0,0.41 PL:DP:SP:GT:GQ 70,0,30:3:0:0/1:33 +chr10 8077137 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8086696 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8093034 . G T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,1,13,2;MQ=47;PV4=0.19,1,0.098,0.22 PL:DP:SP:GT:GQ 197,29,0:16:0:1/1:99 +chr10 8093185 . T C 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=46 PL:DP:SP:GT:GQ 146,24,0:8:0:1/1:96 +chr10 8096732 . A T 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8108088 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8111409 . C T 15.9 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 8111621 . C T 19.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,4;MQ=49;PV4=0.43,0.12,0.13,1 PL:DP:SP:GT:GQ 49,0,84:7:0:0/1:52 +chr10 8114348 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 8115497 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8115662 . A C 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 8155216 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 8155269 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8172326 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 8190833 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8201355 . A ACAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8203309 . C A 5.46 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,1,2;MQ=49;PV4=0.14,0.002,0.067,1 PL:DP:SP:GT:GQ 34,0,127:7:8:0/1:37 +chr10 8211583 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8215968 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 8234520 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8284765 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8284926 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8289417 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 8309912 . t tCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8337290 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 8345579 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8352236 . T A 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 8367461 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 8387158 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8393506 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8399328 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 8448137 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8492037 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8541239 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8561586 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8572310 . ac aCCTc 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 8585691 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 8590004 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8595541 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8638759 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 8658193 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 8663011 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8664762 . G GAATACAA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 8677236 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 8681979 . G C 7.09 . DP=2;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,12:2:0:0/1:15 +chr10 8711664 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8739470 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 8739638 . G GAAC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 8759770 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 8831961 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8836544 . CTC CTCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8857858 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8869670 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 8885928 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 8887331 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 8890480 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8892410 . AA AAAGTTTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8899512 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 8957381 . T TAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8998393 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 9003658 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 9038727 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 9060327 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9066319 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 9090506 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 9101007 . t tTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9122324 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 9124380 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 9140496 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 9178131 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 9219755 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 9226420 . ccgac cc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9230681 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 9233338 . tg tGAGg 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 9246071 . T TGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9264004 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 9282465 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 9308551 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9320741 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 9329469 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 9375811 . T TTG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 9381802 . AC ACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9421092 . G GGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 9431374 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 9436847 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 9445672 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 9455377 . t tGTGTAACGGG 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 9483577 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9541069 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9573300 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 9577845 . ct cTCTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9583624 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 9609998 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9674671 . g gCATTGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 9707901 . tg tGCCGGTACGGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9718567 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 9765758 . A G 15.9 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 9776952 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 9813131 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 9823086 . tgg tGGCAgg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9854472 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 9869585 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9876725 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 9877633 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 9931942 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 9943942 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9982267 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 9984782 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10041367 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 10076976 . ag aGTg 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 10078799 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10087614 . T TGC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10102236 . A T 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 10105108 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 10166311 . gcc gCCTCcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 10177963 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 10192456 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 10216139 . A C 7.8 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,32:2:0:0/1:34 +chr10 10236738 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10240336 . CAT CATGAT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 10287622 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10297026 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10326836 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 10336308 . t tTC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 10366936 . attt a 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 10386137 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10390135 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10394734 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10413316 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10453431 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 10500059 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10520185 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10563972 . A T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,42:2:0:0/1:39 +chr10 10577142 . T A 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 10579058 . ca cATTACTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 10595794 . t tCTAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 10647722 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 10661897 . A ATT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10718402 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 10723449 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 10728832 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 10761365 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 10768080 . A G 28.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr10 10770717 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 10809234 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 10862463 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10894842 . A AGTC 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 10908099 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 10909998 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10924603 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10924605 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10963614 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11000097 . G C 3.05 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,15:2:0:0/1:18 +chr10 11019815 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11038036 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11038048 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11047201 . G A 16.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 11068174 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 11080269 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11084300 . GGA GGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 11150961 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11151506 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11155449 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11165556 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11165566 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11205256 . A AGCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 11207285 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11208549 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11223563 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11258710 . G GCATGTATTCTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 11266822 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11277624 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 11299654 . A C 7.59 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 11299735 . A T 26.3 . DP=50;AF1=0.5336;CI95=0.5,1;DP4=0,1,6,0;MQ=49;PV4=0.14,0.089,0.3,1 PL:DP:SP:GT:GQ 56,0,9:7:0:0/1:12 +chr10 11300468 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11317245 . GT GTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 11330576 . C T 11.3 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr10 11356093 . TTTT TTTTGTTT 99 . INDEL;DP=42;AF1=0.95;CI95=0.5,1;DP4=1,2,11,15;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 255,15,15:29:0:1/1:10 +chr10 11356094 . TTT TTTGTT 99 . INDEL;DP=43;AF1=0.5;CI95=0.5,0.5;DP4=1,2,5,0;MQ=50;PV4=0.11,1,1,1 PL:DP:SP:GT:GQ 149,0,70:8:10:0/1:73 +chr10 11356095 . TT TTGT 25.5 . INDEL;DP=41;AF1=0.5;CI95=0.5,0.5;DP4=1,3,3,0;MQ=50;PV4=0.14,1,1,1 PL:DP:SP:GT:GQ 63,0,88:7:8:0/1:66 +chr10 11356097 . T TGGGG 25.5 . INDEL;DP=41;AF1=0.5;CI95=0.5,0.5;DP4=3,5,2,0;MQ=50;PV4=0.44,1,1,1 PL:DP:SP:GT:GQ 63,0,211:10:4:0/1:66 +chr10 11356712 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11361413 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11364839 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 11368490 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11386437 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11394181 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 11401659 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 11402817 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11415052 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 11419772 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11435630 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11504428 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11567686 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 11621538 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11635951 . C G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,37:2:0:0/1:32 +chr10 11658605 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11684393 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11706156 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11706183 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11711594 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11712722 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11723537 . A T 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 11733812 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11744873 . A ACTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 11758942 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 11762095 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 11763302 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11783818 . ACCCCC ACCCCCCC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 11789250 . G A 71.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 104,18,0:6:0:1/1:90 +chr10 11789382 . G A 99 . DP=57;AF1=1;CI95=1,1;DP4=0,1,30,20;MQ=49;PV4=0.41,0.21,0.29,1 PL:DP:SP:GT:GQ 251,127,0:51:0:1/1:99 +chr10 11789405 . G A 48 . DP=56;AF1=1;CI95=1,1;DP4=0,0,3,5;MQ=49 PL:DP:SP:GT:GQ 81,24,0:8:0:1/1:96 +chr10 11789511 . C G 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,4,31;MQ=49 PL:DP:SP:GT:GQ 205,105,0:35:0:1/1:99 +chr10 11789553 . T C 6.98 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.089,1,0.49 PL:DP:SP:GT:GQ 36,0,72:7:0:0/1:39 +chr10 11797434 . GTT GT 27.5 . INDEL;DP=41;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,2;MQ=50;PV4=1,0.0086,1,0.022 PL:DP:SP:GT:GQ 65,0,82:6:0:0/1:68 +chr10 11797436 . T C 55.1 . DP=39;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 88,21,0:7:0:1/1:84 +chr10 11797467 . G A 99 . DP=25;AF1=0.7303;CI95=0.5,1;DP4=0,2,2,15;MQ=47;PV4=1,0.16,0.1,1 PL:DP:SP:GT:GQ 153,0,2:19:0:0/1:3 +chr10 11805339 . C T 10.4 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=8,8,4,1;MQ=47;PV4=0.34,1.2e-08,0.025,1 PL:DP:SP:GT:GQ 40,0,255:21:5:0/1:43 +chr10 11805354 . A G 99 . DP=30;AF1=1;CI95=0.5,1;DP4=1,0,7,3;MQ=45;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 139,11,0:11:0:1/1:66 +chr10 11805357 . G A 84 . DP=30;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=42 PL:DP:SP:GT:GQ 117,24,0:8:0:1/1:96 +chr10 11815591 . T A 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 11835702 . t tCA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 11840006 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 11854795 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11877945 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 11884553 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 11904683 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 11915971 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 11928533 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11939877 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11942981 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 11944672 . T TCG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 11978499 . T G 49 . DP=39;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 82,24,0:8:0:1/1:96 +chr10 11985670 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12009399 . T G 6.98 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=1,11,5,0;MQ=49;PV4=0.00097,4.5e-05,0.0016,0.25 PL:DP:SP:GT:GQ 36,0,239:17:30:0/1:39 +chr10 12011949 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12039782 . T TGGC 3.25 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,77:4:0:0/1:41 +chr10 12076250 . CA CAGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 12083993 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 12095914 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12100742 . AAAAAG AAAAAGAAAAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12106064 . tc tCGGGAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12111935 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12112070 . TA TACA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 12123666 . C T 15.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,9;MQ=50;PV4=1,5.5e-11,0.15,1 PL:DP:SP:GT:GQ 45,0,211:19:0:0/1:48 +chr10 12139569 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 12140030 . C G 32.4 . DP=20;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 62,0,7:5:0:0/1:10 +chr10 12143105 . C G 42.1 . DP=44;AF1=0.5163;CI95=0.5,1;DP4=0,1,3,1;MQ=48;PV4=0.4,0.31,0.18,1 PL:DP:SP:GT:GQ 72,0,12:5:0:0/1:15 +chr10 12149939 . C T 32.1 . DP=50;AF1=0.9966;CI95=0.5,1;DP4=0,1,1,3;MQ=48;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 61,1,0:5:0:1/1:23 +chr10 12154676 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12160965 . C T 5.49 . DP=8;AF1=0.5049;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 34,0,17:5:0:0/1:20 +chr10 12160969 . T TGACGC 3.81 . INDEL;DP=9;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,26:2:0:0/1:29 +chr10 12162790 . GTCT GTCTCTGAGAGAGAGATCT 66.4 . INDEL;DP=17;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 106,9,0:3:0:1/1:63 +chr10 12162796 . TGGGC TGACTCGGGC 7.35 . INDEL;DP=17;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 12191616 . C G 6.2 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=8,4,0,3;MQ=48;PV4=0.077,0.029,1.4e-10,1 PL:DP:SP:GT:GQ 35,0,255:15:11:0/1:38 +chr10 12191620 . C A 32 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,1,0,7;MQ=48;PV4=0.00025,0.00053,0.0011,1 PL:DP:SP:GT:GQ 62,0,222:18:36:0/1:65 +chr10 12198019 . G A 99 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,10;MQ=46;PV4=1,0.043,6.9e-16,1 PL:DP:SP:GT:GQ 179,0,186:18:0:0/1:99 +chr10 12200092 . A G 5.46 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,3;MQ=48;PV4=1,0.47,1,0.42 PL:DP:SP:GT:GQ 34,0,40:6:0:0/1:36 +chr10 12200125 . C T 45 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=48;PV4=1,0.028,0.029,1 PL:DP:SP:GT:GQ 75,0,125:12:0:0/1:78 +chr10 12202866 . A T 70 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=11,0,10,0;MQ=49;PV4=1,1.9e-11,0.018,1 PL:DP:SP:GT:GQ 100,0,220:21:0:0/1:99 +chr10 12206193 . G T 42 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=47;PV4=1,0.26,1,1 PL:DP:SP:GT:GQ 72,0,67:7:0:0/1:69 +chr10 12206361 . A C 5.46 . DP=46;AF1=0.4999;CI95=0.5,0.5;DP4=5,15,7,0;MQ=49;PV4=0.00089,0.013,7.8e-05,1 PL:DP:SP:GT:GQ 34,0,255:27:30:0/1:37 +chr10 12208532 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12209752 . T C 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=10,12,9,14;MQ=49;PV4=0.77,7.1e-16,0.22,1 PL:DP:SP:GT:GQ 142,0,255:45:1:0/1:99 +chr10 12221207 . GAA G 6.56 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 12221208 . A T 6.02 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 12238325 . TGGGAGGG TGGG 99 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,9;MQ=50;PV4=0.44,0.4,1,1 PL:DP:SP:GT:GQ 193,0,174:16:0:0/1:99 +chr10 12268401 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12279328 . T A 18 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 12287655 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 12290167 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12292286 . C G 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=11,0,11,1;MQ=47;PV4=1,5.7e-10,4.6e-06,1 PL:DP:SP:GT:GQ 171,0,217:23:0:0/1:99 +chr10 12292344 . A G 21 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=1,20,0,8;MQ=49;PV4=1,9.2e-11,3.1e-25,1 PL:DP:SP:GT:GQ 51,0,255:29:0:0/1:54 +chr10 12333644 . g gCATGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12410639 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 12477471 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 12505853 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 12578171 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 12580644 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12588497 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 12595427 . G A 9.31 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 12615290 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 12630561 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12657593 . t tG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 12682308 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 12692614 . T C 4.77 . DP=2;AF1=0.5009;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,24:2:0:0/1:26 +chr10 12708720 . TAT TATCTATAGAT 7.37 . INDEL;DP=25;AF1=0.5032;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,19:2:0:0/1:22 +chr10 12708728 . T C 3.41 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr10 12708729 . T TCGCATAA 12.7 . INDEL;DP=18;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12712070 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 12712229 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 12730218 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 12744139 . AGC AGCTGGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12748998 . G GT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 12763184 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12793975 . T TCCAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12794757 . TA TACGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12807754 . A T 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 12836121 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 12848660 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 12858045 . G A 99 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,6,0;MQ=47;PV4=1,6e-05,0,1 PL:DP:SP:GT:GQ 132,0,169:12:0:0/1:99 +chr10 12858409 . A G 46 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=48;PV4=1,0.027,0.007,0.19 PL:DP:SP:GT:GQ 76,0,146:9:0:0/1:79 +chr10 12867598 . C G 79 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=7,9,5,6;MQ=49;PV4=1,2.8e-08,0.12,1 PL:DP:SP:GT:GQ 109,0,255:27:0:0/1:99 +chr10 12872705 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 12891506 . G GGCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12930147 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 12956433 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 12993800 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13010164 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 13069442 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13100381 . A G 41 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=2,2,5,0;MQ=47;PV4=0.17,0.11,0.35,0.16 PL:DP:SP:GT:GQ 71,0,101:9:8:0/1:74 +chr10 13111744 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 13167674 . TTC TTCTCTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 13168705 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 13171571 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 13184970 . T TCAAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 13192767 . aa aATTa 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 13199247 . A C 6.2 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,0.056,1,0.068 PL:DP:SP:GT:GQ 35,0,34:3:0:0/1:34 +chr10 13201520 . A G 12 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=34 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 13201533 . T G,C 3.41 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 48,22,30,16,0,30:3:0:1/1:49 +chr10 13208106 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 13214786 . G A 50.8 . DP=40;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,4;MQ=48;PV4=1,1,0.26,1 PL:DP:SP:GT:GQ 80,0,4:6:0:0/1:6 +chr10 13214812 . A G 20.1 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=50 PL:DP:SP:GT:GQ 53,24,0:8:0:1/1:96 +chr10 13228110 . A G 7.81 . DP=13;AF1=0.5019;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.0057,0.44 PL:DP:SP:GT:GQ 37,0,21:5:0:0/1:24 +chr10 13237015 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=1,0,20,0;MQ=47;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 155,40,0:21:0:1/1:99 +chr10 13239547 . A G 12 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 13246031 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 13246190 . C T 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,9,1;MQ=46 PL:DP:SP:GT:GQ 150,30,0:10:0:1/1:99 +chr10 13250865 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 13251324 . C G 6.2 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=1,10,0,4;MQ=48;PV4=1,0.17,0.038,0.31 PL:DP:SP:GT:GQ 35,0,180:15:0:0/1:38 +chr10 13268161 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 13275514 . A G 33.4 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,8,0;MQ=50;PV4=1,1,0.37,1 PL:DP:SP:GT:GQ 66,13,0:9:0:1/1:65 +chr10 13276179 . A G 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=46 PL:DP:SP:GT:GQ 154,24,0:8:0:1/1:96 +chr10 13276310 . C CATGCCGCT 5.08 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,72:3:0:0/1:44 +chr10 13308650 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13308665 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 13313084 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 13337588 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=46 PL:DP:SP:GT:GQ 164,57,0:19:0:1/1:99 +chr10 13340112 . T A 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 13340293 . A G 18.6 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 51,12,0:4:0:1/1:72 +chr10 13352876 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 13370315 . C T 7.11 . DP=25;AF1=0.5206;CI95=0.5,1;DP4=1,0,2,0;MQ=48;PV4=1,1,0.26,1 PL:DP:SP:GT:GQ 36,0,11:3:0:0/1:14 +chr10 13375906 . T C 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=43 PL:DP:SP:GT:GQ 141,15,0:5:0:1/1:75 +chr10 13435101 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 13481427 . T A 7.8 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=8,19,2,7;MQ=50;PV4=1,5.1e-12,0.1,0.035 PL:DP:SP:GT:GQ 37,0,255:36:0:0/1:40 +chr10 13485321 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13494594 . T C 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=3,19,1,15;MQ=48;PV4=0.62,4.9e-14,4e-05,1 PL:DP:SP:GT:GQ 136,0,255:38:2:0/1:99 +chr10 13506501 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 13541724 . TA TAAAACA 99 . INDEL;DP=30;AF1=0.5;CI95=0.5,0.5;DP4=16,1,7,1;MQ=50;PV4=1,0.14,0.074,0.0027 PL:DP:SP:GT:GQ 166,0,255:25:0:0/1:99 +chr10 13577625 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 13633835 . A G 25 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr10 13639435 . AC ACGC 8.19 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 13639766 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 13652830 . A G 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 13653554 . A G 33 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=47;PV4=1,0.0075,0.029,1 PL:DP:SP:GT:GQ 63,0,124:8:0:0/1:66 +chr10 13653675 . T C 73 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=13,2,0,16;MQ=48;PV4=5.1e-07,0.012,0.0041,1 PL:DP:SP:GT:GQ 103,0,214:31:63:0/1:99 +chr10 13658335 . G A 17.5 . DP=20;AF1=1;CI95=0.5,1;DP4=1,0,7,0;MQ=49;PV4=1,0.27,1,1 PL:DP:SP:GT:GQ 49,7,0:8:0:1/1:57 +chr10 13661689 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 13676485 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13683189 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 13693883 . C T 75.4 . DP=18;AF1=1;CI95=0.5,1;DP4=1,0,13,0;MQ=48;PV4=1,0.16,1,0.056 PL:DP:SP:GT:GQ 108,13,0:14:0:1/1:65 +chr10 13709869 . T TACAGCCGG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 13743391 . C A 33 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,6;MQ=48;PV4=1,0.44,0.041,1 PL:DP:SP:GT:GQ 63,0,87:12:0:0/1:66 +chr10 13743517 . G A 51 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,7;MQ=49;PV4=1,0.016,0.028,1 PL:DP:SP:GT:GQ 81,0,153:14:0:0/1:84 +chr10 13750323 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13769800 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 13782124 . A G 17.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 13782496 . G A 4.77 . DP=37;AF1=0.4999;CI95=0.5,0.5;DP4=4,13,9,0;MQ=49;PV4=0.00046,1.3e-05,0.0015,1 PL:DP:SP:GT:GQ 33,0,255:26:33:0/1:36 +chr10 13782605 . G A 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,1,32;MQ=48 PL:DP:SP:GT:GQ 181,99,0:33:0:1/1:99 +chr10 13787542 . A ACCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 13799320 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13807847 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 13813428 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 13815477 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 13844326 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 13881094 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13977906 . ccattgcatca cca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 13988387 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 14017839 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14022285 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 14060134 . AACA AA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 14060693 . TTGT TT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 14066031 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 14066050 . G C 4.13 . DP=2;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,0,1;MQ=40;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,24:2:0:0/1:26 +chr10 14082303 . G C 4.21 . DP=2;AF1=0.5161;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,12:2:0:0/1:15 +chr10 14094171 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14097213 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 14156185 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 14186341 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 14241817 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14250789 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14256401 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 14258267 . CT CTGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 14275204 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14289519 . tc tCCTCc 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14303095 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 14304355 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 14320990 . T G 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 14351440 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14352328 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 14356714 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14366050 . g gGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14368231 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 14372063 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 14381313 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14382066 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14410063 . C T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 14414202 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 14448005 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 14462368 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14493970 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14497970 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 14503161 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 14514863 . AG AGTTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14519892 . G A 10.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 14519924 . A C 6.79 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 14529523 . t tGTCGCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14563097 . A G 14.1 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr10 14572300 . A G 13.5 . DP=6;AF1=0.543;CI95=0.5,1;DP4=1,0,3,0;MQ=47;PV4=1,1,0.13,0.45 PL:DP:SP:GT:GQ 43,0,8:4:0:0/1:11 +chr10 14572306 . A T 6.02 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 14592635 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14611423 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14632332 . A AGTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14635186 . T TGGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14637067 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 14663901 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14681467 . GGA GGAGA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 14693160 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 14700381 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14765351 . T A 5.46 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,1,2;MQ=39;PV4=0.43,0.0073,0.17,1 PL:DP:SP:GT:GQ 34,0,113:7:0:0/1:37 +chr10 14819973 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 14852334 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14866927 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14868593 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 14882003 . T G 4.77 . DP=12;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 33,0,29:4:0:0/1:31 +chr10 14882003 . TT TTCGCTGCGCT 7.35 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 14905185 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14906395 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14934483 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14963547 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 14967310 . GGAGA G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14976727 . G C 47 . DP=13;AF1=0.5013;CI95=0.5,0.5;DP4=0,2,1,4;MQ=48;PV4=1,0.49,0.14,0.033 PL:DP:SP:GT:GQ 77,0,23:7:0:0/1:26 +chr10 14977939 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14981932 . G C 15.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 14981942 . C G 16.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 15014418 . C G 44.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=47 PL:DP:SP:GT:GQ 77,21,0:7:0:1/1:84 +chr10 15014440 . A G 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=47 PL:DP:SP:GT:GQ 155,48,0:16:0:1/1:99 +chr10 15014698 . C T 5.29 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 15014702 . A G 13.2 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr10 15023727 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15036531 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15057303 . g gCTGT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15106379 . A G 32 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,0,7,0;MQ=49;PV4=1,3.8e-06,3.1e-05,1 PL:DP:SP:GT:GQ 62,0,177:14:0:0/1:65 +chr10 15154974 . A G 13.9 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 15162964 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 15166243 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 15172078 . CAG CAGAG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.14 PL:DP:SP:GT:GQ 38,0,92:4:0:0/1:41 +chr10 15173312 . T C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 15221517 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15234735 . TA TAAA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 15237355 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 15263100 . C T 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=46 PL:DP:SP:GT:GQ 164,36,0:12:0:1/1:99 +chr10 15267089 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15290696 . C T 28 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=1,12,0,4;MQ=49;PV4=1,0.18,7.5e-05,1 PL:DP:SP:GT:GQ 58,0,228:17:0:0/1:61 +chr10 15322767 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15347616 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15360676 . CC CCCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15372452 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15376859 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15388415 . T TCGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15396186 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15396207 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15428900 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15449026 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15485529 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15486091 . A ACACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15500468 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15511853 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 15544750 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 15573050 . A G 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=44 PL:DP:SP:GT:GQ 186,30,0:10:0:1/1:99 +chr10 15611877 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 15640262 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 15648243 . C T 15.2 . DP=32;AF1=0.505;CI95=0.5,0.5;DP4=0,1,3,1;MQ=50;PV4=0.4,0.019,0.34,1 PL:DP:SP:GT:GQ 45,0,17:5:0:0/1:20 +chr10 15655696 . T G 9.52 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,1;MQ=47;PV4=0.43,0.044,1,0.28 PL:DP:SP:GT:GQ 39,0,63:7:0:0/1:42 +chr10 15669756 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 15685983 . A T 20.6 . DP=8;AF1=0.9998;CI95=0.5,1;DP4=1,0,4,0;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 50,2,0:5:0:1/1:37 +chr10 15693266 . TGT TGTAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15697393 . A T 14.2 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=1,17,8,0;MQ=49;PV4=5.8e-06,0.00016,0.0053,1 PL:DP:SP:GT:GQ 44,0,246:26:52:0/1:47 +chr10 15713541 . T C 60.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 93,12,0:4:0:1/1:72 +chr10 15713667 . C G 86 . DP=16;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=49 PL:DP:SP:GT:GQ 119,36,0:12:0:1/1:99 +chr10 15720866 . T A 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 15726159 . T G 24 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=49;PV4=1,0.1,1,1 PL:DP:SP:GT:GQ 54,0,58:9:0:0/1:56 +chr10 15728269 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 15729923 . C T 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,33,0;MQ=47 PL:DP:SP:GT:GQ 147,99,0:33:0:1/1:99 +chr10 15741312 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 15752619 . G GGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15760939 . A C 19.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,4;MQ=48;PV4=0.14,0.063,0.15,1 PL:DP:SP:GT:GQ 49,0,104:8:8:0/1:52 +chr10 15783293 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 15801258 . TC TCCTCACCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15804694 . a aATGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15810275 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15810280 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 15848318 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 15865282 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15874369 . A ATC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 15934887 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 15949600 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 15950296 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 15985072 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 15989335 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 16027306 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 16033307 . ttctct tt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 16079971 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16095235 . a aTCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 16133005 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 16143359 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16157798 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 16160492 . ACTTT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 16164486 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16280024 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16286037 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 16302424 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16319885 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16320233 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 16320495 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 16326927 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 16334786 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 16355076 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 16366063 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16366096 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16492175 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16494946 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 16508921 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 16513396 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 16515744 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 16526840 . G A 48 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=50 PL:DP:SP:GT:GQ 81,27,0:9:0:1/1:99 +chr10 16547058 . A G 53.2 . DP=46;AF1=0.7303;CI95=0.5,1;DP4=0,1,6,0;MQ=47;PV4=0.14,1,0.027,1 PL:DP:SP:GT:GQ 82,0,2:7:0:0/1:3 +chr10 16556710 . T C 19.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,4;MQ=49;PV4=1,0.026,0.076,1 PL:DP:SP:GT:GQ 49,0,179:11:0:0/1:52 +chr10 16562600 . G A 33 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=9,8,6,3;MQ=50;PV4=0.68,2.8e-07,0.072,0.097 PL:DP:SP:GT:GQ 63,0,255:26:2:0/1:66 +chr10 16576504 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16601106 . a aTCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 16611152 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 16613165 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16627346 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16642901 . G GGTTCTGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 16736977 . T C 9.49 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 41,9,0:3:0:1/1:63 +chr10 16748321 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16776447 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 16797033 . A G 59 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,10;MQ=49;PV4=1,0.0019,0.099,1 PL:DP:SP:GT:GQ 89,0,99:14:0:0/1:92 +chr10 16797963 . ACTC AC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 16843978 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 16853903 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16856556 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 16887445 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16905881 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 16943371 . G C 46.3 . DP=58;AF1=0.543;CI95=0.5,1;DP4=0,1,4,2;MQ=50;PV4=0.43,0.007,0.3,1 PL:DP:SP:GT:GQ 76,0,8:7:0:0/1:11 +chr10 16967401 . C T 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 16970182 . G A 4.18 . DP=3;AF1=0.51;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,14:2:0:0/1:17 +chr10 16979751 . T A 23 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=9,5,0,7;MQ=49;PV4=0.0071,4.6e-05,0.014,1 PL:DP:SP:GT:GQ 53,0,255:21:21:0/1:56 +chr10 16997824 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 17009881 . a aACCATATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 17024503 . G A 22.2 . DP=17;AF1=0.5207;CI95=0.5,1;DP4=0,1,3,1;MQ=49;PV4=0.4,0.12,0.34,1 PL:DP:SP:GT:GQ 52,0,11:5:0:0/1:14 +chr10 17024615 . A T 24.1 . DP=27;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.31,0.1,1 PL:DP:SP:GT:GQ 54,0,16:4:0:0/1:19 +chr10 17030322 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17040063 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 17075345 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 17086933 . A G 9.52 . DP=13;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.085,0.2,0.16 PL:DP:SP:GT:GQ 39,0,30:5:0:0/1:32 +chr10 17086940 . A T 3.55 . DP=14;AF1=0.5014;CI95=0.5,0.5;DP4=2,0,3,0;MQ=50;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 31,0,22:5:0:0/1:24 +chr10 17100244 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 17113105 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 17130598 . TT TTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 17131442 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 17135012 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17151714 . CTCTTC CTC 4.42 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,36:4:0:0/1:38 +chr10 17156151 . A G 6.2 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=2,7,2,2;MQ=49;PV4=0.53,0.0043,0.03,1 PL:DP:SP:GT:GQ 35,0,234:13:3:0/1:38 +chr10 17157630 . C T 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=2,9,4,23;MQ=49;PV4=1,4.7e-10,0.012,0.018 PL:DP:SP:GT:GQ 180,0,213:38:0:0/1:99 +chr10 17164366 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 17168042 . AA AAACA 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 41,0,56:3:0:0/1:44 +chr10 17168563 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 17168615 . T C 15.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 17174567 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 17187287 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 17191011 . A G 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.17,0.21,0.48 PL:DP:SP:GT:GQ 31,0,62:4:0:0/1:34 +chr10 17196634 . TAAAA TATCAAAA 15.6 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.42,1,1 PL:DP:SP:GT:GQ 53,0,41:3:0:0/1:44 +chr10 17196649 . G C 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.055,0.21,1 PL:DP:SP:GT:GQ 31,0,49:4:0:0/1:34 +chr10 17199419 . C G 63 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43 PL:DP:SP:GT:GQ 95,9,0:3:0:1/1:63 +chr10 17204139 . G A,T 36.5 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=46 PL:DP:SP:GT:GQ 75,18,64,6,0,64:5:0:1/1:72 +chr10 17204187 . G A 88.5 . DP=17;AF1=0.9998;CI95=0.5,1;DP4=0,1,5,4;MQ=48;PV4=1,0.23,0.28,1 PL:DP:SP:GT:GQ 118,2,0:10:0:1/1:37 +chr10 17211231 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 17216556 . C T 92 . DP=24;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=47 PL:DP:SP:GT:GQ 125,33,0:11:0:1/1:99 +chr10 17243372 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 17272648 . G C 18.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,7,4,0;MQ=48;PV4=0.077,0.052,0.00011,1 PL:DP:SP:GT:GQ 48,0,255:15:11:0/1:51 +chr10 17279224 . AAC AACTACGGCAC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.43 PL:DP:SP:GT:GQ 38,0,96:4:0:0/1:41 +chr10 17279270 . A C 8.64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,1;MQ=48;PV4=1,0.2,0.0061,1 PL:DP:SP:GT:GQ 38,0,51:4:0:0/1:41 +chr10 17305039 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17305047 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 17362106 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 17365186 . A C 8.74 . DP=9;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,1,0.042,0.14 PL:DP:SP:GT:GQ 38,0,13:3:0:0/1:16 +chr10 17421281 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 17434240 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17476498 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 17510921 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 17512416 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17558790 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 17560532 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 17588152 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 17601594 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17619958 . C T 3.64 . DP=7;AF1=0.5205;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 31,0,11:3:0:0/1:14 +chr10 17620792 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 17623189 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 17636403 . G C 11.3 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.065,0.065,1 PL:DP:SP:GT:GQ 41,0,110:7:0:0/1:44 +chr10 17645814 . C T 85 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,2,4,2;MQ=47;PV4=0.43,0.026,0.057,0.41 PL:DP:SP:GT:GQ 115,0,56:8:4:0/1:59 +chr10 17646088 . T C 3.54 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.077,0.079,0.22 PL:DP:SP:GT:GQ 31,0,77:6:0:0/1:34 +chr10 17653605 . G C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 17686334 . C T 39 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,3,3,1;MQ=48;PV4=0.57,0.094,0.051,1 PL:DP:SP:GT:GQ 69,0,165:10:2:0/1:72 +chr10 17718013 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 17726972 . TT TTGCCCT 4.42 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,40:2:0:0/1:40 +chr10 17737028 . A G 10.4 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=9,2,6,0;MQ=50;PV4=0.51,0.01,4.5e-05,1 PL:DP:SP:GT:GQ 40,0,203:17:3:0/1:43 +chr10 17747053 . G C 13.2 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=1,17,0,12;MQ=50;PV4=1,3.9e-10,0.39,0.21 PL:DP:SP:GT:GQ 43,0,255:30:0:0/1:46 +chr10 17773371 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17773389 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 17775063 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 18138639 . A G 13.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 18231855 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18237298 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 18242304 . T C 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,8,15;MQ=46 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr10 18251309 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18251345 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18254606 . C A 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=1,9,0,4;MQ=50;PV4=1,0.0027,0.007,1 PL:DP:SP:GT:GQ 32,0,231:14:0:0/1:35 +chr10 18274943 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18280016 . G A 6.98 . DP=10;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.065,1 PL:DP:SP:GT:GQ 36,0,29:4:0:0/1:31 +chr10 18285348 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18292428 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 18292446 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18298932 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 18315373 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18331799 . A C 12.3 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,1,0.074,1 PL:DP:SP:GT:GQ 42,0,43:6:0:0/1:42 +chr10 18340121 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 18353726 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18405070 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 18439747 . C T 51.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=46 PL:DP:SP:GT:GQ 84,12,0:4:0:1/1:72 +chr10 18446561 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18454685 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18533770 . c cTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 18561887 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 18568160 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18596796 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18727725 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 18737521 . c cTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 18774450 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18774471 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18789252 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 18789671 . A C 9.31 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 18803915 . A C 6.98 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=2,2,3,0;MQ=49;PV4=0.43,0.11,0.065,1 PL:DP:SP:GT:GQ 36,0,80:7:4:0/1:39 +chr10 18823250 . T C 12 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 18828663 . G T 17.1 . DP=8;AF1=0.6671;CI95=0.5,1;DP4=0,1,1,2;MQ=49;PV4=1,1,0.26,0.1 PL:DP:SP:GT:GQ 46,0,3:4:0:0/1:5 +chr10 18828721 . CAAA CAAAAA 99 . INDEL;DP=15;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=50 PL:DP:SP:GT:GQ 252,36,0:12:0:1/1:99 +chr10 18828723 . AAG AAGAG 96.5 . INDEL;DP=16;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 137,21,0:7:0:1/1:84 +chr10 18836957 . C T 3.28 . DP=9;AF1=0.5716;CI95=0.5,1;DP4=0,1,2,0;MQ=49;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 30,0,6:3:0:0/1:8 +chr10 18837285 . T C 25.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr10 18868631 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18871213 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18872872 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 18898916 . T C 6.98 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.45,0.048,1 PL:DP:SP:GT:GQ 36,0,37:4:0:0/1:36 +chr10 18903605 . A C 29 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr10 18931512 . T C 99 . DP=22;AF1=1;CI95=1,1;DP4=0,1,0,20;MQ=44;PV4=1,1,0.0023,1 PL:DP:SP:GT:GQ 222,47,0:21:0:1/1:99 +chr10 18937579 . AAAGAAG AAAGAAGAAG 19.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 57,0,83:6:0:0/1:60 +chr10 18957647 . T G 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,1,18;MQ=48 PL:DP:SP:GT:GQ 164,57,0:19:0:1/1:99 +chr10 19010724 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19026387 . ACT A 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 19026886 . G A 20 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.0055,0.092,1 PL:DP:SP:GT:GQ 50,0,161:10:0:0/1:53 +chr10 19027478 . G A 37 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,5,6,0;MQ=49;PV4=0.093,0.0039,1.2e-07,1 PL:DP:SP:GT:GQ 67,0,255:16:10:0/1:70 +chr10 19072792 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19072797 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19091591 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19139024 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 19160979 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 19176770 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 19209487 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19293206 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 19309467 . t tTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 19311918 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 19312899 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 19351043 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19355861 . tt tTAGATTTTATGAGGt 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 19408059 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19433630 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 19436928 . C CAGTCG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 19528656 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 19541152 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 19633941 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19638462 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 19658690 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 19667147 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19694913 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 19794038 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 19808313 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 19820714 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 19830942 . CAAAA CA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 19868214 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 19894830 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19910989 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19921743 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19939805 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 19985215 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 19995903 . T A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20070047 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20093007 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 20098326 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 20117318 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 20137292 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20162981 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20213524 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20213631 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 20257782 . T TCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 20258987 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 20261545 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 20296454 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20354296 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 20406347 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 20406351 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 20432411 . G A 58.1 . DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 91,21,0:7:0:1/1:84 +chr10 20438863 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20446540 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 20462052 . A AGTCGTCT 12.7 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 20486215 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20506418 . G A 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=18,11,11,12;MQ=48;PV4=0.4,5.8e-12,7.3e-17,1 PL:DP:SP:GT:GQ 207,0,255:52:4:0/1:99 +chr10 20511505 . T TTCAAACCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 20534333 . A G 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=22,11,9,4;MQ=48;PV4=1,5.1e-06,2.8e-15,0.003 PL:DP:SP:GT:GQ 200,0,255:46:0:0/1:99 +chr10 20562026 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 20568524 . T C 32 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,4,0;MQ=48;PV4=1,0.0054,0.16,1 PL:DP:SP:GT:GQ 62,0,33:5:0:0/1:36 +chr10 20573980 . A ACCTTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 20585605 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20604764 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 20615538 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 20631347 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 20646547 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 20668453 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 20723668 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20732346 . C T 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 20740586 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 20759294 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20782965 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 20813244 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20852075 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 20879956 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 20930737 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 20969525 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 20970597 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 20985564 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 20992226 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 21014889 . A T 4.77 . DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,27:2:0:0/1:29 +chr10 21018539 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21070217 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 21091805 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 21098688 . T G 3.54 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,0.16,0.01,1 PL:DP:SP:GT:GQ 31,0,101:9:0:0/1:34 +chr10 21104534 . A C 10.6 . DP=11;AF1=0.5263;CI95=0.5,1;DP4=1,0,3,0;MQ=48;PV4=1,0.28,1,0.47 PL:DP:SP:GT:GQ 40,0,10:4:0:0/1:13 +chr10 21104535 . A T 5.47 . DP=11;AF1=0.5015;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 34,0,22:4:0:0/1:25 +chr10 21104613 . T C 11.3 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,16,2,3;MQ=50;PV4=0.12,8.5e-06,0.00013,0.41 PL:DP:SP:GT:GQ 41,0,255:22:9:0/1:44 +chr10 21115332 . T C 17.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=49;PV4=1,0.038,0.16,0.49 PL:DP:SP:GT:GQ 47,0,79:7:0:0/1:50 +chr10 21120116 . A G 58 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=17,0,12,0;MQ=49;PV4=1,1e-11,1e-10,1 PL:DP:SP:GT:GQ 88,0,239:29:0:0/1:91 +chr10 21137019 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 21139216 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 21139294 . A ACGAACGCTTGC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21141469 . T C 37 . DP=17;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 70,27,0:9:0:1/1:99 +chr10 21142950 . A T 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 21147133 . A T 6.79 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 21171173 . g gCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21172102 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21176945 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 21178780 . A G 3.54 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=3,1,2,0;MQ=49;PV4=1,0.35,0.00017,1 PL:DP:SP:GT:GQ 31,0,88:6:0:0/1:34 +chr10 21181442 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 21182448 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 21205345 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 21245697 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21255162 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21276302 . T G 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr10 21277883 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 21279703 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21319000 . G A 4.13 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,2;MQ=43;PV4=1,0.0068,0.026,0.077 PL:DP:SP:GT:GQ 32,0,41:3:0:0/1:34 +chr10 21319010 . A C 62 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=45;PV4=1,0.0093,0.023,0.27 PL:DP:SP:GT:GQ 92,0,74:6:0:0/1:77 +chr10 21319705 . G T 34 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=45;PV4=0.4,1,0.051,1 PL:DP:SP:GT:GQ 64,0,39:5:0:0/1:42 +chr10 21339698 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21350826 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21355042 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21378160 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 21382589 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 21386615 . GT GTCTGGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21401765 . T C 21 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 +chr10 21414892 . C G 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,3,28;MQ=49 PL:DP:SP:GT:GQ 201,93,0:31:0:1/1:99 +chr10 21430083 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 21435340 . ACACTC AC 99 . INDEL;DP=60;AF1=0.5;CI95=0.5,0.5;DP4=12,18,6,15;MQ=50;PV4=0.55,1,1,1 PL:DP:SP:GT:GQ 255,0,255:51:3:0/1:99 +chr10 21437445 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 21477647 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21515638 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21526523 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21549839 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 21558102 . CT CTTAT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 21571385 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 21615784 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21622030 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21661948 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21677509 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21694896 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21705615 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21706830 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 21759405 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 21760159 . C G 4.2 . DP=2;AF1=0.9966;CI95=0.5,1;DP4=1,0,0,1;MQ=30;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,1,0:2:0:1/1:23 +chr10 21762607 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21812972 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21835046 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21854943 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21875209 . T TCACCCCACGGC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21884323 . T A 6.2 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,0,3;MQ=49;PV4=0.4,0.19,0.1,1 PL:DP:SP:GT:GQ 35,0,69:6:4:0/1:38 +chr10 21888311 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 21900476 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21917713 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 21925020 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 21926169 . t tTTGCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21926525 . ag aGTGAGAGCg 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 21931316 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21936402 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 21946613 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 22022400 . A AGC 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 41,0,46:3:0:0/1:43 +chr10 22040779 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22058925 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22063990 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22088505 . t tCCTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 22159387 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 22164027 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22169025 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22171185 . A C 6.21 . DP=9;AF1=0.5019;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 35,0,21:5:0:0/1:24 +chr10 22218112 . G C 9.6 . DP=6;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,1,1,0.3 PL:DP:SP:GT:GQ 39,0,14:3:0:0/1:17 +chr10 22221587 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 22233163 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22263133 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22275415 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22291745 . T A 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 22315808 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22327530 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22337752 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22339660 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 22395260 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22411480 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22423574 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22427016 . c cGGATGAGA 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 22443359 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22450408 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 22458197 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 22557442 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22558589 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 22566299 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 22601686 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22603667 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22607823 . A C 11.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 22617918 . AC ACCCC 5.09 . INDEL;DP=5;AF1=0.5025;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.037 PL:DP:SP:GT:GQ 41,0,20:3:0:0/1:23 +chr10 22640349 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22649010 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22670883 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 22671042 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 22717250 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 22724525 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 22727675 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22756805 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 22768150 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22780773 . T TCATACTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 22796113 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 22803010 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 22804175 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22830719 . G C 99 . DP=35;AF1=0.8277;CI95=0.5,1;DP4=2,1,21,7;MQ=48;PV4=1,0.046,0.098,1 PL:DP:SP:GT:GQ 201,0,1:31:0:1/1:5 +chr10 22839628 . T C 40.3 . DP=18;AF1=0.543;CI95=0.5,1;DP4=1,0,4,1;MQ=48;PV4=1,0.31,0.28,1 PL:DP:SP:GT:GQ 70,0,8:6:0:0/1:11 +chr10 22842835 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22853322 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22855048 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 22856946 . C T 91 . DP=8;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=48 PL:DP:SP:GT:GQ 124,24,0:8:0:1/1:96 +chr10 22861474 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22862118 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 22870762 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22875295 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 22896779 . C T 51 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=44 PL:DP:SP:GT:GQ 83,9,0:3:0:1/1:63 +chr10 22898553 . T G 12.3 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=8,0,4,0;MQ=48;PV4=1,0.039,0.047,1 PL:DP:SP:GT:GQ 42,0,146:12:0:0/1:45 +chr10 22898556 . A C 23 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=47;PV4=1,0.039,0.024,1 PL:DP:SP:GT:GQ 53,0,106:8:0:0/1:56 +chr10 22939572 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 22942178 . G A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22955961 . AAAAATA AA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 22956876 . A T 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 23009405 . AA AACTGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 23012836 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23062705 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 23073724 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23079836 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23092095 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 23109543 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 23118486 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 23191990 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23193496 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 23242996 . t tTCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 23249104 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23291048 . T C 15.2 . DP=8;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.21,0.11,0.35 PL:DP:SP:GT:GQ 45,0,13:4:0:0/1:16 +chr10 23296137 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23299017 . A G 7.89 . DP=2;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,13:2:0:0/1:16 +chr10 23315954 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 23341661 . a aTTCTCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 23381659 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23382132 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23409588 . A ATT 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.28 PL:DP:SP:GT:GQ 41,0,55:3:0:0/1:44 +chr10 23426671 . T G 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 23482850 . G A 39.1 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 72,21,0:7:0:1/1:84 +chr10 23491503 . T TCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 23518618 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23523618 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 23547338 . T A 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,1,0;MQ=48;PV4=0.33,0.45,0,1 PL:DP:SP:GT:GQ 32,0,65:3:0:0/1:35 +chr10 23550940 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23552796 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23567713 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23640511 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23641087 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23661232 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 23688543 . A C 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 23693234 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23721107 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23737693 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23757819 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23765883 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 23777973 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23794669 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23837797 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23935282 . CTAGATTTTA CTA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 23946721 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 23954899 . C T 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23964059 . A C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23973908 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 23977060 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23995677 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 24028158 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24037438 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24059678 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 24090843 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24102755 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24106379 . T G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 24124860 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 24164343 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 24168266 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24169895 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24203975 . A T 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 24233275 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24276673 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24283071 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24332573 . G A 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 24345070 . C CTATTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 24345650 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24357819 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24373487 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24402613 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 24412046 . gc gCTATTTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 24424210 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24467851 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24470332 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 24483516 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24496177 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24505055 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 24527059 . G GGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 24530360 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 24564830 . C T 9.56 . DP=29;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.083,0.33,1 PL:DP:SP:GT:GQ 39,0,17:4:0:0/1:20 +chr10 24564859 . A G 13.2 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,5;MQ=49;PV4=1,2.7e-05,2.1e-05,0.068 PL:DP:SP:GT:GQ 43,0,215:16:0:0/1:46 +chr10 24643207 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24646710 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24672258 . C CAGTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 24714580 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24727492 . C G 12.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,2;MQ=48;PV4=1,0.028,0.0038,1 PL:DP:SP:GT:GQ 42,0,153:7:0:0/1:45 +chr10 24740862 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24759438 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24762465 . A G 58 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=2,5,5,6;MQ=48;PV4=0.64,0.002,0.15,1 PL:DP:SP:GT:GQ 88,0,150:18:2:0/1:91 +chr10 24784206 . T C 3.01 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.36,0.0034,1 PL:DP:SP:GT:GQ 30,0,52:5:0:0/1:33 +chr10 24786291 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 24802141 . T C 8.66 . DP=7;AF1=0.5015;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0.21,0.17,0.24 PL:DP:SP:GT:GQ 38,0,22:3:0:0/1:25 +chr10 24830554 . C CGCGCGA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24849578 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 24849657 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24873369 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24873995 . C G 3.98 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 24878129 . G A 6.79 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 24880232 . C G 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24880712 . G A 25.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr10 24880899 . C G 3.59 . DP=3;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,14:2:0:0/1:17 +chr10 24884779 . GAAAAAAAA GAAAAAAA,GAAAAAAAAA 28.5 . INDEL;DP=21;AF1=1;CI95=1,1;DP4=0,0,11,3;MQ=50 PL:DP:SP:GT:GQ 69,39,70,0,28,67:14:0:1/1:99 +chr10 24889383 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24889901 . T G 94 . DP=23;AF1=1;CI95=1,1;DP4=0,1,0,19;MQ=47;PV4=1,0.38,0.15,1 PL:DP:SP:GT:GQ 127,33,0:20:0:1/1:99 +chr10 24896805 . T C 4.77 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=45;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 33,0,43:3:0:0/1:36 +chr10 24908430 . G T 5.46 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,3,0;MQ=50;PV4=1,0.011,1,0.0089 PL:DP:SP:GT:GQ 34,0,106:6:0:0/1:37 +chr10 24909712 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24915375 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24929228 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24949743 . G C 41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=46 PL:DP:SP:GT:GQ 73,9,0:3:0:1/1:63 +chr10 24949895 . G T 38 . DP=8;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,5,0;MQ=47;PV4=0.17,1.4e-05,0.21,1 PL:DP:SP:GT:GQ 68,0,32:6:0:0/1:35 +chr10 24949901 . C T 18.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,0;MQ=46;PV4=1,1,0.0057,0.41 PL:DP:SP:GT:GQ 48,0,69:5:0:0/1:51 +chr10 24959320 . T G 6.36 . DP=8;AF1=0.5262;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,0.28,0.33,0.11 PL:DP:SP:GT:GQ 35,0,10:4:0:0/1:13 +chr10 24964343 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 24982001 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24989171 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25000133 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25020356 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 25035761 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25049852 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 25062338 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 25074367 . g gACATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25091751 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25109228 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25142026 . T TTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25145181 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25149612 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25152926 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25156443 . T TGA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 25175792 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25181296 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 25195328 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25196566 . T TCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25203253 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 25232308 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25242523 . C CTGTCTCTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25252099 . A T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,36:2:0:0/1:34 +chr10 25281468 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25326618 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25373322 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25388883 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 25394178 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25407530 . TGG TGGGGG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 25414815 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25419172 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 25433221 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25469239 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 25481970 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25505099 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 25529710 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 25565557 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25574194 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25631568 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25656602 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 25684768 . T C 24 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=6,0,2,0;MQ=48;PV4=1,0.015,0.00019,1 PL:DP:SP:GT:GQ 54,0,174:8:0:0/1:57 +chr10 25695747 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 25700509 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25724296 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 25733895 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25755678 . G C 30 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,5;MQ=49;PV4=1,0.1,0.0013,0.13 PL:DP:SP:GT:GQ 60,0,154:14:0:0/1:63 +chr10 25755716 . Tacacacacacacacacaca TACacacacacacacacacaca 12.7 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25755732 . cacataca caca 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25789973 . ATGG ATGGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25797774 . tg tGGGg 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 25802650 . t tGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 25825969 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25861632 . C T 87 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=4,16,3,15;MQ=49;PV4=1,1.1e-15,0.014,1 PL:DP:SP:GT:GQ 117,0,255:38:0:0/1:99 +chr10 25862838 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25885765 . T G 3.01 . DP=19;AF1=0.4997;CI95=0.5,0.5;DP4=0,9,0,4;MQ=49;PV4=1,0.23,0.00066,0.052 PL:DP:SP:GT:GQ 30,0,118:13:0:0/1:33 +chr10 25888180 . A G 95.4 . DP=43;AF1=1;CI95=0.5,1;DP4=0,1,9,2;MQ=48;PV4=0.25,0.45,0.19,1 PL:DP:SP:GT:GQ 128,13,0:12:0:1/1:65 +chr10 25916827 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25935332 . A ATTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25942395 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25965204 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25969301 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25987085 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25991954 . gg gGCTATg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25998967 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 26081084 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26087479 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26093713 . C CTGAACAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26097794 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26100643 . c cGTCGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26123606 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 26154450 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26189856 . ata aTAGTta 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26285537 . A C 22 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 26304985 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26309385 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26310341 . GTT GTTCTCGGACTT 7.62 . INDEL;DP=2;AF1=0.543;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr10 26324557 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26357650 . AC ACGTAGTGTC 5.79 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,44:2:0:0/1:43 +chr10 26357748 . G A 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=13,9,8,7;MQ=48;PV4=0.75,7.4e-08,7.6e-11,1 PL:DP:SP:GT:GQ 213,0,255:37:1:0/1:99 +chr10 26357885 . A ACGC 5.08 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,57:3:0:0/1:44 +chr10 26360035 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26399950 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26414552 . AG AGCTG 7.57 . INDEL;DP=5;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,9:2:0:0/1:12 +chr10 26427899 . G GCC 5.08 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 26443747 . T C 14.2 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,3;MQ=48;PV4=0.43,0.38,0.029,1 PL:DP:SP:GT:GQ 44,0,82:7:4:0/1:47 +chr10 26458830 . c cAGAGACCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26460161 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 26463130 . C A 61 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=14,11,2,14;MQ=50;PV4=0.0082,1.9e-16,0.014,1 PL:DP:SP:GT:GQ 91,0,255:41:21:0/1:94 +chr10 26463507 . A G 6.79 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 26463513 . T A 6.98 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.42,0.0061,0.051 PL:DP:SP:GT:GQ 36,0,38:4:0:0/1:37 +chr10 26510364 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 26514979 . T A 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr10 26534937 . C T 19.1 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,8,0,4;MQ=49;PV4=1,0.033,0.00074,1 PL:DP:SP:GT:GQ 49,0,239:14:0:0/1:52 +chr10 26534985 . A ACAGAGA 7.35 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 26559732 . T G 49 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,9;MQ=49;PV4=1,0.027,0.037,1 PL:DP:SP:GT:GQ 79,0,67:13:0:0/1:70 +chr10 26562658 . T C 14.2 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.0016,0.33,0.01 PL:DP:SP:GT:GQ 44,0,113:10:0:0/1:47 +chr10 26567492 . ac aCCCGTCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26583312 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26593934 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 26598614 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 26676296 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 26676611 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26681008 . C CATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26696506 . A AAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 26701154 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26723497 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 26735923 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 26738081 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 26754271 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 26774337 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 26781388 . G A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=48 PL:DP:SP:GT:GQ 150,54,0:18:0:1/1:99 +chr10 26802653 . G A 29.4 . DP=10;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,3;MQ=45;PV4=1,1,0.12,1 PL:DP:SP:GT:GQ 59,0,7:4:0:0/1:10 +chr10 26815521 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 26830672 . T C 4.77 . DP=3;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.14,0.33,1 PL:DP:SP:GT:GQ 33,0,26:3:0:0/1:28 +chr10 26849292 . G C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 26855591 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26877005 . AGC AGTGGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26877393 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 26877700 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 26910525 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 26911761 . AT ATTT 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 26948411 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 26955910 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26995907 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 27007312 . CCTC CCTCTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27009334 . A G 77 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,15,0,18;MQ=49;PV4=1,0.0004,0.0048,1 PL:DP:SP:GT:GQ 107,0,190:33:0:0/1:99 +chr10 27035296 . A T 8.64 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,11,5,0;MQ=49;PV4=0.00097,0.0046,0.12,1 PL:DP:SP:GT:GQ 38,0,217:17:30:0/1:41 +chr10 27035414 . G T 8.64 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,64:11:0:0/1:41 +chr10 27078026 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 27082119 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 27141395 . c cTCA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 27176042 . A ATATGGGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27176732 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27181324 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 27183981 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27192343 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 27250908 . AC ACC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 27252564 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27266617 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 27288586 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 27298855 . AA AGTAGA 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27303852 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27311595 . C G 4.13 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,0,2;MQ=49;PV4=0.048,0.32,0.0026,1 PL:DP:SP:GT:GQ 32,0,115:7:13:0/1:35 +chr10 27322304 . AACC A 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,0.42,1,1 PL:DP:SP:GT:GQ 38,0,103:4:0:0/1:41 +chr10 27333119 . CC CCAGATGTC 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 27352908 . A C 7.8 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 27352923 . CTT CTTTT 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,70:3:0:0/1:44 +chr10 27355381 . T G 17.8 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr10 27364301 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 27375559 . C T 38 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,7;MQ=49;PV4=1,0.00056,0,0.28 PL:DP:SP:GT:GQ 68,0,54:9:0:0/1:57 +chr10 27382586 . G C 28 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,2;MQ=42;PV4=0.4,0.13,0.015,1 PL:DP:SP:GT:GQ 58,0,90:6:4:0/1:61 +chr10 27388945 . AC ACTC 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27388949 . A ACTAGT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27400861 . G A 3.55 . DP=8;AF1=0.5014;CI95=0.5,0.5;DP4=2,0,2,0;MQ=45;PV4=1,1,1,0.13 PL:DP:SP:GT:GQ 31,0,22:4:0:0/1:24 +chr10 27400862 . T C 54 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=47;PV4=1,0.43,0.24,1 PL:DP:SP:GT:GQ 84,0,54:8:0:0/1:57 +chr10 27400965 . T A 6.2 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=4,3,0,3;MQ=48;PV4=0.2,0.35,0.016,0.29 PL:DP:SP:GT:GQ 35,0,129:10:7:0/1:38 +chr10 27401056 . C T 38 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,5;MQ=49;PV4=0.47,0.0046,0.026,0.23 PL:DP:SP:GT:GQ 68,0,218:12:3:0/1:71 +chr10 27405096 . A G 30 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,7,0;MQ=50;PV4=0.3,3.3e-16,0.27,1 PL:DP:SP:GT:GQ 60,0,112:10:0:0/1:63 +chr10 27409555 . G A 22 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 27423744 . T C 13.2 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=11,0,5,1;MQ=50;PV4=0.35,1.8e-10,0.33,1 PL:DP:SP:GT:GQ 43,0,222:17:0:0/1:46 +chr10 27456003 . G A 23 . DP=27;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr10 27482685 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27493513 . T A 7.8 . DP=18;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,4;MQ=50;PV4=1,0.13,0.27,1 PL:DP:SP:GT:GQ 37,0,33:6:0:0/1:35 +chr10 27496624 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 27506854 . C T 63.1 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 96,21,0:7:0:1/1:84 +chr10 27520629 . T G 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 27535600 . T C 4.13 . DP=42;AF1=0.4998;CI95=0.5,0.5;DP4=14,7,5,3;MQ=36;PV4=1,4.8e-05,0.28,0.068 PL:DP:SP:GT:GQ 32,0,252:29:0:0/1:35 +chr10 27536378 . GA GACA 3.25 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=45;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 38,0,37:3:0:0/1:37 +chr10 27536428 . T C 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,10,8;MQ=31 PL:DP:SP:GT:GQ 255,54,0:18:0:1/1:99 +chr10 27539507 . C T 4.13 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=7,7,3,1;MQ=49;PV4=0.59,1.8e-05,0.017,1 PL:DP:SP:GT:GQ 32,0,255:18:2:0/1:35 +chr10 27540670 . A C 18.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,3;MQ=47;PV4=0.14,1,0.21,1 PL:DP:SP:GT:GQ 48,0,73:7:8:0/1:51 +chr10 27546303 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 27572205 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27577568 . G A 53.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 86,15,0:5:0:1/1:75 +chr10 27579600 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 27596223 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27598418 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 27629880 . T C 29.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 61,6,0:2:0:1/1:49 +chr10 27636782 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27654688 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27661241 . A AAGACTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27687775 . T C 47.3 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=50 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr10 27687965 . A G 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=11,4,5,6;MQ=47;PV4=0.23,1,1.1e-12,1 PL:DP:SP:GT:GQ 255,0,255:26:6:0/1:99 +chr10 27692099 . A G 98.2 . DP=17;AF1=0.5207;CI95=0.5,1;DP4=1,0,12,0;MQ=47;PV4=1,0.0035,0.12,1 PL:DP:SP:GT:GQ 128,0,11:13:0:0/1:14 +chr10 27692205 . G A 14.2 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=10,14,5,2;MQ=49;PV4=0.22,1.5e-06,3.2e-05,1 PL:DP:SP:GT:GQ 44,0,255:31:7:0/1:47 +chr10 27692279 . A C 43.3 . DP=41;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=49 PL:DP:SP:GT:GQ 76,15,0:5:0:1/1:75 +chr10 27692371 . T G 91 . DP=20;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=48 PL:DP:SP:GT:GQ 124,42,0:14:0:1/1:99 +chr10 27692403 . C A 68.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=43 PL:DP:SP:GT:GQ 101,12,0:4:0:1/1:72 +chr10 27700887 . G A 7.09 . DP=7;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 36,0,12:4:0:0/1:15 +chr10 27702256 . GCCCCCC GCCCCCCC 48.9 . INDEL;DP=19;AF1=1;CI95=0.5,1;DP4=0,1,2,7;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 89,13,0:10:0:1/1:65 +chr10 27714898 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 27725648 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 27743051 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 27746663 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 27771950 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 27775448 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 27794202 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27822619 . TTCT TT 60.5 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=50;PV4=1,0.32,1,0.34 PL:DP:SP:GT:GQ 98,0,144:8:0:0/1:99 +chr10 27857932 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 27895628 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 27899499 . C CCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27915819 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27933701 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 27944016 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27960297 . g gCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27964100 . T C 99 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,10,0;MQ=45;PV4=1,0.039,0,1 PL:DP:SP:GT:GQ 181,0,82:13:0:0/1:85 +chr10 28023747 . G C 15.1 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=49;PV4=1,0.034,0.27,1 PL:DP:SP:GT:GQ 45,0,126:12:0:0/1:48 +chr10 28024038 . A ATGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28041936 . t tGG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 28050697 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28076426 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 28100895 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28111738 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28115604 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28138431 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28223886 . A C 40 . DP=26;AF1=0.5006;CI95=0.5,0.5;DP4=3,0,7,0;MQ=48;PV4=1,1,0.0037,1 PL:DP:SP:GT:GQ 70,0,26:10:0:0/1:29 +chr10 28223896 . C T 6.98 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=14,0,5,0;MQ=49;PV4=1,0.0079,0.00024,0.41 PL:DP:SP:GT:GQ 36,0,210:19:0:0/1:39 +chr10 28224075 . G A 99 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=10,17,5,11;MQ=48;PV4=0.75,0.00039,6e-10,1 PL:DP:SP:GT:GQ 215,0,255:43:1:0/1:99 +chr10 28228865 . A G 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=14,6,4,7;MQ=47;PV4=0.13,0.00015,1.7e-08,1 PL:DP:SP:GT:GQ 208,0,255:31:9:0/1:99 +chr10 28233120 . A C 39 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,6,0;MQ=48;PV4=1,0.00034,0.068,1 PL:DP:SP:GT:GQ 69,0,136:11:0:0/1:72 +chr10 28268132 . c cCCTCGGAAGGG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28268146 . G C 4.13 . DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,0,1;MQ=47;PV4=1,1,0,0.17 PL:DP:SP:GT:GQ 32,0,29:3:0:0/1:30 +chr10 28281725 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 28293616 . A G 7.94 . DP=2;AF1=0.5206;CI95=0.5,1;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,11:2:0:0/1:14 +chr10 28296883 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 28335272 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 28345418 . T C 48.1 . DP=50;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=50 PL:DP:SP:GT:GQ 81,18,0:6:0:1/1:90 +chr10 28346033 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28347457 . T G 24 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=13,0,0,7;MQ=49;PV4=1.3e-05,0.00098,0.0037,0.07 PL:DP:SP:GT:GQ 54,0,197:20:49:0/1:57 +chr10 28349707 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28372269 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28409614 . C T,G 44 . DP=26;AF1=1;CI95=0.5,1;DP4=0,1,0,23;MQ=49;PV4=1,0.0037,0.18,1 PL:DP:SP:GT:GQ 148,81,93,72,0,120:24:0:1/1:63 +chr10 28423989 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 28424010 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28424243 . G C 18.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr10 28438835 . TCTGCACT TCT 99 . INDEL;DP=9;AF1=0.508;CI95=0.5,0.5;DP4=2,0,7,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 184,0,15:9:0:0/1:18 +chr10 28495301 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 28501685 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28509185 . T TGTACATC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 28566207 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 28599615 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28604345 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28649437 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28651677 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28653257 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 28660854 . g gAAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28695563 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28695655 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28697330 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28705236 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 28725226 . A G 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,2;MQ=34;PV4=1,9.2e-05,1,0.017 PL:DP:SP:GT:GQ 32,0,61:5:0:0/1:35 +chr10 28739829 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 28742624 . t tTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28776787 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28846505 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 28849741 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28878641 . A ATAGTAT 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,73:3:0:0/1:44 +chr10 28878643 . T TACGTGCG 7.35 . INDEL;DP=11;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,29:2:0:0/1:32 +chr10 28879477 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 28879779 . T A 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 28904977 . TAACAA TAA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 28928558 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28948138 . A ACGGCGTGCAC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,40:2:0:0/1:42 +chr10 28953509 . tg tGCCGACAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28971009 . C G 4.23 . DP=10;AF1=0.5205;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 32,0,11:4:0:0/1:14 +chr10 28980658 . cc cCGc 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 28986296 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 29052613 . GGA GGAACATGA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 29083956 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29084099 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 29093841 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 29106417 . C G 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,35:2:0:0/1:36 +chr10 29160998 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 29191656 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29191664 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 29199021 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 29199030 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 29234587 . gc gCGGAAATACc 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 29276689 . ttc tTCAGGACCAtc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29276857 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 29285078 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29285093 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29290434 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 29290895 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 29336403 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 29348351 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 29356371 . aag aAGTCag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29430408 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 29450642 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 29452690 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 29454157 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 29483889 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 29507765 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 29519469 . g gGGC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 29530035 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29539915 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 29559085 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 29580743 . G A 4.77 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,0,0.45 PL:DP:SP:GT:GQ 33,0,58:3:0:0/1:36 +chr10 29599294 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 29607747 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 29645924 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 29710689 . AC ACTC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,1,1,0.48 PL:DP:SP:GT:GQ 38,0,101:4:0:0/1:41 +chr10 29741672 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 29747417 . C T 8.44 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 29747618 . T A 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,15;MQ=46 PL:DP:SP:GT:GQ 149,45,0:15:0:1/1:99 +chr10 29754609 . T C 7.19 . DP=4;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,9:3:0:0/1:12 +chr10 29759167 . CGG CG 39.5 . INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=50;PV4=1,0.00066,1,1 PL:DP:SP:GT:GQ 77,0,87:9:0:0/1:80 +chr10 29759169 . GT G 15.6 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,0,8,0;MQ=50;PV4=1,5.6e-05,1,1 PL:DP:SP:GT:GQ 53,0,81:12:0:0/1:56 +chr10 29760209 . C T 81 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=49 PL:DP:SP:GT:GQ 114,36,0:12:0:1/1:99 +chr10 29773804 . G GGC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr10 29783908 . A G 36 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,3,0;MQ=47;PV4=0.1,0.32,0.26,1 PL:DP:SP:GT:GQ 66,0,50:5:10:0/1:53 +chr10 29784114 . T C 4.13 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 32,0,32:3:0:0/1:32 +chr10 29791839 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 29822032 . C T 99 . DP=22;AF1=1;CI95=0.5,1;DP4=1,0,11,6;MQ=49;PV4=1,6.3e-06,0.29,0.47 PL:DP:SP:GT:GQ 137,7,0:18:0:1/1:57 +chr10 29839787 . A G 82 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=11,8,7,5;MQ=49;PV4=1,1.2e-12,0.011,1 PL:DP:SP:GT:GQ 112,0,255:31:0:0/1:99 +chr10 29839864 . A C 99 . DP=42;AF1=1;CI95=1,1;DP4=2,0,19,16;MQ=47;PV4=0.5,1,0.39,1 PL:DP:SP:GT:GQ 255,75,0:37:3:1/1:99 +chr10 29844206 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29845359 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 29855816 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 29889831 . T TTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29895387 . t tAGACATTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29896626 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 29910283 . C CGAGTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29919045 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 29921156 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 29925913 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 29940540 . A T 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 29999426 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30026739 . g gCGTGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30033737 . T G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30037434 . G GGTGCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30046412 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30050175 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30054757 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30072066 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30118929 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 30124912 . T TCC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 30127347 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30140239 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30155679 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30176262 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30204435 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 30209756 . A C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 30210343 . tctc tCTCGAGGCctc 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 30216046 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 30237399 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30239732 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 30240255 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 30255183 . C CGGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30258081 . C G 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 30258121 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30274476 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30316072 . C G 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=10,7,6,12;MQ=48;PV4=0.18,4.1e-09,1.6e-07,1 PL:DP:SP:GT:GQ 218,0,255:35:7:0/1:99 +chr10 30317685 . A T 6.98 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=10,5,0,5;MQ=49;PV4=0.033,0.21,0.024,0.12 PL:DP:SP:GT:GQ 36,0,209:20:15:0/1:39 +chr10 30325997 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30345850 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30363733 . t tGGCCCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30373017 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30382564 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30398459 . T A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 30398499 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30407091 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30414155 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30414643 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30432174 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30435257 . tcact tCACTACTGGcact 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30449482 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 30463645 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30466340 . TTC TTCATAGAGGCTC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 30469332 . GAATTTC G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30469376 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30488485 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30488912 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 30522173 . T TGTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30572761 . a aAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30609054 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30609658 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 30611459 . C A 5.46 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=9,2,0,5;MQ=49;PV4=0.0048,0.0032,0.14,1 PL:DP:SP:GT:GQ 34,0,231:16:23:0/1:37 +chr10 30613176 . g gCCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30617792 . GA GAAA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30629082 . C T 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 30646971 . CT CTTACTATAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30654785 . G GACGAAGC 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,42:2:0:0/1:43 +chr10 30657670 . A C 12.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=45;PV4=1,0.24,1,1 PL:DP:SP:GT:GQ 42,0,65:4:0:0/1:45 +chr10 30669367 . G A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 30669430 . G A 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 30669878 . G C 38.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 70,6,0:2:0:1/1:49 +chr10 30669952 . A T 6.55 . DP=2;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,1;MQ=30;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,1:2:0:1/1:5 +chr10 30682317 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30711201 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30740530 . A T 19 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 30749895 . G A 50 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,5;MQ=48;PV4=0.44,0.038,0.014,0.35 PL:DP:SP:GT:GQ 80,0,116:9:0:0/1:83 +chr10 30767146 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30767773 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30785897 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30806124 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 30812680 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 30818863 . AG AGGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30831066 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30856181 . gtctt gTCTtctt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30861203 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30861208 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30862111 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30866024 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30875171 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30900802 . C T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr10 30912354 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 30915994 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 30918668 . G T 55 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,8;MQ=47;PV4=1,0.00091,0.076,1 PL:DP:SP:GT:GQ 85,0,83:11:0:0/1:84 +chr10 30940579 . A T 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30944881 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30966282 . C CATGCTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30978288 . C CACAAT 7.46 . INDEL;DP=2;AF1=0.5163;CI95=0.5,1;DP4=0,1,1,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 30984774 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30985081 . G A 53 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=49 PL:DP:SP:GT:GQ 86,42,0:14:0:1/1:99 +chr10 30985990 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30986253 . G A 6.98 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr10 30993448 . G A 34 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 66,9,0:3:0:1/1:63 +chr10 30998358 . GAT GATAT 5.11 . INDEL;DP=11;AF1=0.505;CI95=0.5,0.5;DP4=0,2,0,1;MQ=49;PV4=1,1,1,0.24 PL:DP:SP:GT:GQ 41,0,17:3:0:0/1:20 +chr10 31005821 . A G 3.01 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=45;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 30,0,46:3:0:0/1:33 +chr10 31005822 . C T 16.3 . DP=7;AF1=0.5263;CI95=0.5,1;DP4=1,0,2,0;MQ=45;PV4=1,1,1,0.29 PL:DP:SP:GT:GQ 46,0,10:3:0:0/1:13 +chr10 31016165 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31032764 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31071408 . C T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31089738 . ca cAGGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31093803 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31112732 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31134557 . T C 5.46 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,0.00059,0.043,1 PL:DP:SP:GT:GQ 34,0,170:9:0:0/1:37 +chr10 31137100 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 31144153 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31194971 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 31209090 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 31246634 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31258118 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31259590 . TA TAGACGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31262929 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31276314 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 31310642 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 31317281 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31371060 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31409249 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 31424171 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31443901 . T TCTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31444562 . t tCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31448285 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31480439 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 31499998 . C CCCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31508956 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31520483 . ttca t 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 31567677 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31568601 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 31572145 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 31580319 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 31581189 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31591487 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 31597995 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 31601921 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 31610346 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 31634971 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31638243 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31639872 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 31646567 . TA TATTGTAAAA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 31681055 . T TTCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31706798 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 31707184 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 31803516 . G A 17.7 . DP=10;AF1=0.5939;CI95=0.5,1;DP4=1,0,2,1;MQ=47;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 47,0,5:4:0:0/1:7 +chr10 31804022 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31809515 . G T 12.3 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=11,6,0,6;MQ=49;PV4=0.014,0.0022,0.0014,0.33 PL:DP:SP:GT:GQ 42,0,255:23:19:0/1:45 +chr10 31810289 . A C 3.01 . DP=28;AF1=0.4997;CI95=0.5,0.5;DP4=3,14,5,0;MQ=49;PV4=0.0021,0.016,0.0032,1 PL:DP:SP:GT:GQ 30,0,255:22:27:0/1:33 +chr10 31859556 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31883050 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 31917189 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31917344 . A C 17.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 31917546 . T A 3.57 . DP=7;AF1=0.5048;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.24,0.33,1 PL:DP:SP:GT:GQ 31,0,17:3:0:0/1:20 +chr10 31919729 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 31924186 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 32001764 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32031141 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 32041079 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 32079212 . a aGAGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 32096439 . G T 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 32103166 . A T 4.14 . DP=19;AF1=0.5014;CI95=0.5,0.5;DP4=1,0,3,0;MQ=47;PV4=1,0.15,0.25,1 PL:DP:SP:GT:GQ 32,0,22:4:0:0/1:25 +chr10 32103171 . G A 8.64 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=47;PV4=1,0.013,0.31,0.065 PL:DP:SP:GT:GQ 38,0,65:7:0:0/1:41 +chr10 32112242 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32115133 . A G 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 32141460 . T C 70.1 . DP=19;AF1=1;CI95=1,1;DP4=0,0,6,1;MQ=49 PL:DP:SP:GT:GQ 103,21,0:7:0:1/1:84 +chr10 32157745 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 32160753 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32180365 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 32197505 . T G 27 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=12,2,0,7;MQ=49;PV4=0.00031,0.00016,0.0043,0.49 PL:DP:SP:GT:GQ 57,0,255:21:35:0/1:60 +chr10 32204519 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32264492 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 32290211 . t tGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 32307049 . G A 82.6 . DP=12;AF1=1;CI95=0.5,1;DP4=0,1,0,9;MQ=47;PV4=1,1,0.48,1 PL:DP:SP:GT:GQ 115,11,0:10:0:1/1:66 +chr10 32315698 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 32324951 . C T 8.65 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 32326558 . ATGT ACTTGT 5.11 . INDEL;DP=5;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,17:2:0:0/1:20 +chr10 32344736 . CG CGTG 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 32379291 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32390152 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32399317 . C T 57.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 90,12,0:4:0:1/1:72 +chr10 32399487 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32501005 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 32502906 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32517672 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 32575793 . A G 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,1,9;MQ=42 PL:DP:SP:GT:GQ 188,30,0:10:0:1/1:99 +chr10 32621379 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32692473 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 32724393 . aaga aa 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 32726281 . tcaa t 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 32735805 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32735896 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32742256 . T G 42.3 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 +chr10 32745248 . A C 19.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,5;MQ=47;PV4=1,9.6e-05,1,1 PL:DP:SP:GT:GQ 49,0,179:13:0:0/1:52 +chr10 32745262 . T C 74 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,5;MQ=46;PV4=1,0.16,0.0054,1 PL:DP:SP:GT:GQ 104,0,158:12:0:0/1:99 +chr10 32749831 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32751901 . G A 13 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 32800536 . G C 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 32804925 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32807487 . G C 7.81 . DP=11;AF1=0.5025;CI95=0.5,0.5;DP4=0,2,0,3;MQ=50;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 37,0,20:5:0:0/1:23 +chr10 32839297 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32860841 . TT TTCAGAT 5.08 . INDEL;DP=7;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,31:3:0:0/1:34 +chr10 32890341 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32952347 . C G 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 32952365 . G C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 32983966 . T TAAAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33015855 . G A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 33029519 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33038105 . t tCAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 33085705 . taag tAAGAaag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33089383 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 33113632 . C T 5.51 . DP=2;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,15:2:0:0/1:18 +chr10 33115117 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33119453 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33123824 . G C 19 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 33143396 . G A 4.81 . DP=13;AF1=0.5079;CI95=0.5,0.5;DP4=1,0,0,2;MQ=49;PV4=0.33,0.44,0.33,1 PL:DP:SP:GT:GQ 33,0,15:3:0:0/1:18 +chr10 33145334 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33145928 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33148070 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33148573 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 33152548 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 33190620 . A G 3.54 . DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,0.016,0.14,1 PL:DP:SP:GT:GQ 31,0,30:3:0:0/1:30 +chr10 33200782 . C T 91 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,7,11,4;MQ=49;PV4=0.049,1.5e-06,0.058,1 PL:DP:SP:GT:GQ 121,0,249:25:13:0/1:99 +chr10 33209266 . G T 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,6,12;MQ=48 PL:DP:SP:GT:GQ 232,54,0:18:0:1/1:99 +chr10 33226033 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 33233751 . C G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 33285892 . g gCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33292963 . AA AAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33303714 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 33318275 . T TACTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33335752 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33346584 . T G 3.01 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,2,0;MQ=43;PV4=1,0.12,1,0.3 PL:DP:SP:GT:GQ 30,0,48:4:0:0/1:33 +chr10 33364433 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 33377110 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33384037 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 33469181 . A G 55 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=9,5,6,1;MQ=48;PV4=0.61,0.00041,0.015,0.39 PL:DP:SP:GT:GQ 85,0,255:21:2:0/1:88 +chr10 33471761 . gcacacacacacacacacacacacacacac gcacacacacacacacacacacacacac 5.08 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 33475282 . C T 92 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=8,12,5,9;MQ=49;PV4=1,8.9e-08,0.031,0.45 PL:DP:SP:GT:GQ 122,0,255:34:0:0/1:99 +chr10 33510614 . G A 51.8 . DP=17;AF1=0.6243;CI95=0.5,1;DP4=1,0,7,0;MQ=48;PV4=1,0.17,0.091,1 PL:DP:SP:GT:GQ 81,0,4:8:0:0/1:6 +chr10 33510663 . G A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,1,25,14;MQ=49;PV4=1,1,0.22,1 PL:DP:SP:GT:GQ 242,80,0:41:0:1/1:99 +chr10 33510768 . G A 68 . DP=45;AF1=0.6671;CI95=0.5,1;DP4=0,1,4,3;MQ=49;PV4=1,0.15,0.25,1 PL:DP:SP:GT:GQ 97,0,3:8:0:0/1:5 +chr10 33551333 . aa aACTCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33552696 . A G 77.8 . DP=62;AF1=0.6243;CI95=0.5,1;DP4=1,1,16,3;MQ=49;PV4=0.35,0.0032,0.27,0.38 PL:DP:SP:GT:GQ 107,0,4:21:5:0/1:6 +chr10 33566180 . A T 3.01 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,30:2:0:0/1:30 +chr10 33581447 . AAG AAGGCCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33619562 . C T 13 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 33679163 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33680953 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 33688437 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33704864 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 33745011 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33772539 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 33779045 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 33793557 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33793577 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33811251 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 33816055 . ca cAAGTAGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33846170 . T TGTGCAGACTCAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 33856097 . CT CTGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33886304 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 33921529 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 33921748 . A ATGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33940618 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 33953462 . c cACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33957586 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 33957592 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33970415 . G GGGAGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33985959 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 34022963 . aa aAGAGa 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 34027178 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 34037782 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34077189 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34077433 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34120975 . GA GAGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 34155205 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 34263230 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 34277429 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 34305605 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 34336428 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34346099 . T A 3.02 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,27:2:0:0/1:28 +chr10 34385456 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 34400305 . C A 3.54 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=1,14,5,0;MQ=49;PV4=0.00039,0.0001,0.26,0.17 PL:DP:SP:GT:GQ 31,0,250:20:34:0/1:34 +chr10 34405844 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 34408745 . A C 93 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=46 PL:DP:SP:GT:GQ 126,30,0:10:0:1/1:99 +chr10 34424917 . C G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 34467671 . AAA AAATAA 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 34476224 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 34492722 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34502059 . ct cTTCGt 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 34508702 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34510912 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34528178 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 34598285 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34603449 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 34620220 . C T 99 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,4,1,7;MQ=47;PV4=1,0.069,0.0033,0.44 PL:DP:SP:GT:GQ 166,0,149:13:0:0/1:99 +chr10 34637858 . A ACT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34641925 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34642719 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 34648017 . G A 20.1 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=46;PV4=1,0.29,0.059,1 PL:DP:SP:GT:GQ 50,0,42:5:0:0/1:44 +chr10 34648022 . G A 11.3 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,0.11,0.011,1 PL:DP:SP:GT:GQ 41,0,56:6:0:0/1:44 +chr10 34666840 . CTGGAAATGGAA CTGGAA 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 34685371 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 34686175 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 34688287 . G A 99 . DP=50;AF1=1;CI95=1,1;DP4=1,1,22,20;MQ=48;PV4=1,0.043,0.043,1 PL:DP:SP:GT:GQ 255,70,0:44:0:1/1:99 +chr10 34795202 . TC TCGCATAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 34832501 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 34860661 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 34881684 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34888960 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34892821 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34892829 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34948451 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34964725 . A G 33 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.023,0,1 PL:DP:SP:GT:GQ 63,0,80:4:0:0/1:66 +chr10 34973192 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34975586 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35020367 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35032751 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35033774 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 35075060 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 35135850 . t tGGGAGTCGACCAATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35162419 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 35182174 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 35211799 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 35264234 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35320028 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35321297 . T TCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35321414 . C T 99 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=5,15,7,10;MQ=48;PV4=0.48,1.1e-05,5.1e-11,0.032 PL:DP:SP:GT:GQ 227,0,255:37:3:0/1:99 +chr10 35324076 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35390907 . g gTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35402077 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 35437239 . ATTT ATTTT 78.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,7,0;MQ=50;PV4=1,1,1,0.3 PL:DP:SP:GT:GQ 116,0,46:10:0:0/1:49 +chr10 35447721 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 35481270 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35489790 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35490529 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35496669 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 35497694 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35500610 . G T 37 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,5;MQ=47;PV4=1,0.34,0.18,0.02 PL:DP:SP:GT:GQ 67,0,65:10:0:0/1:66 +chr10 35515710 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 35524932 . c cTT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 35578862 . TT TTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35579757 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 35592328 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35599488 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 35612605 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35636553 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 35640926 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 35660812 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35661341 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35672794 . T C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35679072 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35682167 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 35715145 . ac aCTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35737225 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35741294 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 35772402 . G A 33.5 . DP=17;AF1=0.9998;CI95=0.5,1;DP4=1,0,1,4;MQ=49;PV4=0.33,1,0.35,1 PL:DP:SP:GT:GQ 63,2,0:6:0:1/1:37 +chr10 35805284 . A C 43.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 76,12,0:4:0:1/1:72 +chr10 35805292 . A C 6.79 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 35825055 . T A 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr10 35841699 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35849787 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35896573 . C G 7.8 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=11,5,3,2;MQ=49;PV4=1,0.00063,0.0017,1 PL:DP:SP:GT:GQ 37,0,255:21:0:0/1:40 +chr10 35896957 . G A 47 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=2,4,3,2;MQ=49;PV4=0.57,0.12,0.0019,0.26 PL:DP:SP:GT:GQ 77,0,141:11:2:0/1:80 +chr10 35916812 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 35930156 . C A 13.2 . DP=8;AF1=0.5012;CI95=0.5,0.5;DP4=0,1,0,4;MQ=48;PV4=1,0.077,0.33,1 PL:DP:SP:GT:GQ 43,0,23:5:0:0/1:26 +chr10 35932534 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35939575 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 35949655 . ct cTCATt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35954103 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35961919 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35975741 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 35986246 . AA AAGCTCCCA 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,69:3:0:0/1:44 +chr10 36001484 . C CG 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 36004723 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36048239 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36048325 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 36061113 . c cTCGGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 36062718 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 36090010 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36095237 . GAA GAAGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 36099878 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36109092 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 36161639 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36201619 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36229604 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36237351 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 36243380 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36312704 . c cGCTAGTGA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 36341543 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36362344 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36394201 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36401357 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36435558 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36476779 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 36487659 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36487671 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 36501855 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36575379 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36576304 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 36584592 . at aTCGTGCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 36617356 . a aTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 36704557 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 36744306 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 36774593 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 36812362 . C T 26.1 . DP=4;AF1=0.508;CI95=0.5,0.5;DP4=0,1,1,1;MQ=45;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 56,0,15:3:0:0/1:18 +chr10 36844958 . T TATAGGAAAAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 36873622 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 36897766 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 36917282 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36932165 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36950857 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 36969325 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 37012400 . T C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 37040999 . tgg tGGCGTGgg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37071858 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 37076675 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 37109440 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37111515 . CA CAGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37123899 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37129537 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37150017 . GA GAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37155429 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37156838 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 37193832 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 37220931 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37274043 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 37293525 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37325174 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 37342964 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 37344593 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37365872 . ag aGAGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37383784 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 37399312 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 37400015 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 37400474 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37414826 . G A 4.83 . DP=8;AF1=0.51;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,1,0,0.18 PL:DP:SP:GT:GQ 33,0,14:3:0:0/1:17 +chr10 37438777 . G C 13 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 37455643 . TAAAAA TAAAAAAA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 37508381 . G GTGTAA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,1,1,0.22 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 37537105 . GA GAAA 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 37546319 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37554685 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37554693 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37582979 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37583351 . a aGCTCCTAT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 37631071 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37631894 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37670280 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 37721461 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 37766047 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 37779455 . c cCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 37787952 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 37824960 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37841266 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37890590 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 37899950 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 37954419 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 37989659 . gg gGTATCATTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37992909 . G GTT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 37993621 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 38024750 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 38038459 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 38041731 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 38042313 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 38060527 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 38065888 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 38108101 . T A 7.8 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,2;MQ=48;PV4=0.33,0,0,1 PL:DP:SP:GT:GQ 37,0,41:3:0:0/1:39 +chr10 38109805 . A G 18.1 . DP=4;AF1=0.504;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.24,0.33,1 PL:DP:SP:GT:GQ 48,0,18:4:0:0/1:21 +chr10 38121983 . A G 7.8 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=1,11,5,0;MQ=49;PV4=0.00097,0.069,0.46,1 PL:DP:SP:GT:GQ 37,0,175:17:30:0/1:40 +chr10 38134087 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 38140254 . t tCACTCAGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 38167867 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 38167875 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 38172407 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 38195174 . t tCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 38215980 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 38232051 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 38244388 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 38246545 . A G 4.77 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=0,8,0,3;MQ=49;PV4=1,0.0085,0.0012,1 PL:DP:SP:GT:GQ 33,0,189:11:0:0/1:36 +chr10 38306228 . T C 14.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=41 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr10 38343260 . G A 78 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,9,0;MQ=48;PV4=1,0.18,0.046,0.36 PL:DP:SP:GT:GQ 108,0,46:12:0:0/1:49 +chr10 38343351 . C G 9.52 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=48;PV4=0.33,0.039,0.13,0.088 PL:DP:SP:GT:GQ 39,0,79:4:5:0/1:42 +chr10 38343591 . T C 15.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 38344124 . C G 48 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=5,5,2,7;MQ=39;PV4=0.35,0.45,0.00022,1 PL:DP:SP:GT:GQ 78,0,202:19:5:0/1:81 +chr10 38344700 . C G 10.5 . DP=15;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,1,1;MQ=26;PV4=1,0.33,1,1 PL:DP:SP:GT:GQ 40,0,13:3:0:0/1:16 +chr10 38345186 . C CTCAAT 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.28 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 38369770 . ACTCT ACT 99 . INDEL;DP=11;AF1=0.5016;CI95=0.5,0.5;DP4=0,2,0,8;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 174,0,22:10:0:0/1:25 +chr10 38385574 . T G 8.65 . DP=11;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,5;MQ=49;PV4=1,0.013,0.25,1 PL:DP:SP:GT:GQ 38,0,23:7:0:0/1:26 +chr10 38385639 . G C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 38397536 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 38406536 . A AGTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 38420624 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 38421929 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 38464723 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 38464886 . T C 23 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=44 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr10 38466941 . A G 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 38475579 . T C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 38486447 . G A 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=47;PV4=0.33,0.068,0.23,1 PL:DP:SP:GT:GQ 36,0,41:3:0:0/1:38 +chr10 38498027 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 38537070 . A G 26.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 +chr10 38561825 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 38599101 . CTT CTTT 21.3 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr10 38658853 . A C,T 6.4 . DP=7;AF1=0.5335;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 39,4,25,13,0,38:4:0:0/1:12 +chr10 38871788 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 38897584 . G A 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 38909099 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 38909111 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 38934239 . A T 7.81 . DP=5;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,0,3;MQ=48;PV4=0.25,0.031,1,0.18 PL:DP:SP:GT:GQ 37,0,20:4:0:0/1:23 +chr10 38941010 . ta tAAGTGGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 38944447 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 38978114 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 38986462 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 38989987 . T G 15.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 39011138 . G A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 39119414 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 42378441 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 42383985 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 42384737 . C T 3.41 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=16 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr10 42389892 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 42394484 . T C 5.05 . DP=3;AF1=0.5553;CI95=0.5,1;DP4=0,1,1,1;MQ=30;PV4=1,0.0073,1,1 PL:DP:SP:GT:GQ 33,0,7:3:0:0/1:10 +chr10 42396883 . A C 10.5 . DP=18;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,1,2;MQ=35;PV4=1,0.22,0.15,1 PL:DP:SP:GT:GQ 40,0,14:4:0:0/1:17 +chr10 42424342 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 42443761 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 42451586 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 42495754 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 42495991 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 42508370 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 42515435 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 42515581 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 42529727 . t tTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 42534887 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 42621092 . attt at 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 42630809 . c cGAGGACTGT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 42668969 . c cAACATTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 42678350 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 42742932 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 42742936 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 42772221 . A G 14.2 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=49;PV4=1,0.00097,0.27,0.47 PL:DP:SP:GT:GQ 44,0,76:5:0:0/1:47 +chr10 42780589 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 42881308 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 42900083 . A T 3.57 . DP=3;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,1,1;MQ=47;PV4=1,0.11,1,0.46 PL:DP:SP:GT:GQ 31,0,16:3:0:0/1:19 +chr10 42918346 . a aTT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 42949730 . G A 3.06 . DP=7;AF1=0.5099;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,14:2:0:0/1:17 +chr10 42961699 . G GTACTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 42976227 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 42987856 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 43011426 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 43062089 . t tGGGGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43062370 . C CATT 7.46 . INDEL;DP=7;AF1=0.5163;CI95=0.5,1;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 43068222 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43079863 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 43088919 . T G 99 . DP=25;AF1=1;CI95=1,1;DP4=1,0,7,12;MQ=39;PV4=0.4,0.00023,1,1 PL:DP:SP:GT:GQ 169,43,0:20:0:1/1:99 +chr10 43089965 . G A 40 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=46 PL:DP:SP:GT:GQ 72,9,0:3:0:1/1:63 +chr10 43110771 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43118982 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43140452 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43154505 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43155500 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 43159907 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 43166888 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 43193149 . TC TCCTGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43205315 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43209943 . G A 99 . DP=9;AF1=1;CI95=0.5,1;DP4=0,1,2,5;MQ=42;PV4=1,1,0.42,0.15 PL:DP:SP:GT:GQ 170,7,0:8:0:1/1:57 +chr10 43209944 . T C 19.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,4,1,1;MQ=42;PV4=1,1,1,1 PL:DP:SP:GT:GQ 49,0,138:8:0:0/1:52 +chr10 43211236 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43213996 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 43227793 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 43232105 . A G 3.56 . DP=3;AF1=0.5038;CI95=0.5,0.5;DP4=1,0,2,0;MQ=42;PV4=1,1,0.32,1 PL:DP:SP:GT:GQ 31,0,18:3:0:0/1:21 +chr10 43240676 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43240686 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43254205 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43270792 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43280639 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 43281009 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43285781 . T A 3.01 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,2,0;MQ=49;PV4=0.33,0.05,0.33,0.33 PL:DP:SP:GT:GQ 30,0,34:3:0:0/1:32 +chr10 43285916 . C T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,43:2:0:0/1:35 +chr10 43305256 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 43312964 . C G 4.84 . DP=5;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,13:2:0:0/1:16 +chr10 43319197 . G A 18.1 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=16,5,8,3;MQ=32;PV4=1,3.5e-11,0.003,0.32 PL:DP:SP:GT:GQ 48,0,255:32:0:0/1:51 +chr10 43324391 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 43354252 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 43369352 . A G 46.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 78,6,0:2:0:1/1:49 +chr10 43372868 . A AAGAGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43381270 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43386651 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 43390965 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43411070 . t tCGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43452326 . cc cCCTAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43460671 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 43465747 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43478601 . tcacatgc tc 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 43489494 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43500774 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 43533359 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 43541490 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 43560153 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43581361 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 43586506 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 43590531 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43602118 . T C 3.01 . DP=3;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,0.23,0.042,1 PL:DP:SP:GT:GQ 30,0,79:3:0:0/1:33 +chr10 43604370 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 43606687 . A G 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=1,7,16,10;MQ=46;PV4=0.039,0.45,0.0054,0.39 PL:DP:SP:GT:GQ 255,0,74:34:14:0/1:77 +chr10 43609690 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43617515 . T C 12.3 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,4;MQ=49;PV4=1,0.23,7.3e-05,1 PL:DP:SP:GT:GQ 42,0,167:18:0:0/1:45 +chr10 43658410 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 43671495 . C T 7.19 . DP=7;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 36,0,9:3:0:0/1:12 +chr10 43674252 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 43686061 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43691691 . C T 76 . DP=27;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,3,3;MQ=48;PV4=0.46,0.46,0.094,1 PL:DP:SP:GT:GQ 106,0,26:8:3:0/1:29 +chr10 43694363 . C CA 70.5 . INDEL;DP=25;AF1=1;CI95=1,1;DP4=1,0,15,0;MQ=50;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 111,31,0:16:0:1/1:99 +chr10 43694394 . A C 21 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=10,0,7,0;MQ=49;PV4=1,0.034,0.28,0.32 PL:DP:SP:GT:GQ 51,0,129:17:0:0/1:54 +chr10 43696086 . C T 7.59 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 43703904 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 43711436 . G T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 43752619 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43753532 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 43817396 . ag aGCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43833850 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43833857 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43839782 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43869097 . C A 38.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 70,6,0:2:0:1/1:49 +chr10 43872550 . G GAGAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43875938 . c cTT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 43882160 . G T 4.13 . DP=24;AF1=0.4998;CI95=0.5,0.5;DP4=2,4,4,0;MQ=48;PV4=0.076,0.029,0.3,1 PL:DP:SP:GT:GQ 32,0,163:10:11:0/1:35 +chr10 43883342 . T A 43 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,10,0,12;MQ=49;PV4=0.48,3.3e-10,0.005,1 PL:DP:SP:GT:GQ 73,0,249:23:0:0/1:76 +chr10 43904754 . GC GCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43949736 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43968020 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43988321 . t tGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44019949 . C G 22 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=46 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 44019972 . A G 42.1 . DP=7;AF1=0.9966;CI95=0.5,1;DP4=1,0,3,1;MQ=47;PV4=1,1,0.098,0.078 PL:DP:SP:GT:GQ 71,1,0:5:0:1/1:23 +chr10 44052457 . A G 18.1 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=4,16,3,3;MQ=46;PV4=0.29,0.0011,0.0022,1 PL:DP:SP:GT:GQ 48,0,255:26:5:0/1:51 +chr10 44053408 . A G 3.01 . DP=32;AF1=0.4997;CI95=0.5,0.5;DP4=0,18,6,0;MQ=49;PV4=7.4e-06,0.00019,9.9e-05,1 PL:DP:SP:GT:GQ 30,0,226:24:51:0/1:33 +chr10 44054256 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 44069453 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44080017 . T A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 44080671 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44089268 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44099918 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44100369 . T TCG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,38:2:0:0/1:40 +chr10 44100941 . A C 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.11,0.33,1 PL:DP:SP:GT:GQ 33,0,41:3:0:0/1:35 +chr10 44101391 . G A 34.2 . DP=10;AF1=0.5207;CI95=0.5,1;DP4=0,1,1,3;MQ=49;PV4=1,0.26,0.21,1 PL:DP:SP:GT:GQ 64,0,11:5:0:0/1:14 +chr10 44104137 . G T 17.1 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=5,3,5,0;MQ=48;PV4=0.23,0.083,1,1 PL:DP:SP:GT:GQ 47,0,129:13:6:0/1:50 +chr10 44104568 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 44137058 . g gCT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 44159000 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 44223273 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 44228919 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 44236046 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 44239515 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44239873 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44241461 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 44274912 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44283455 . C CAT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 44295410 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44304643 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 44376797 . AC ACAGGACAGGTGC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 44386300 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44390258 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 44400139 . A ATAGCTGTCC 7.36 . INDEL;DP=2;AF1=0.501;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,24:2:0:0/1:27 +chr10 44418365 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44421163 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44477505 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44478843 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44501317 . CCG C 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 44553371 . C CTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44561179 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44580917 . T G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44599243 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44601178 . G T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 44611150 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44611183 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44618473 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44666904 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44676362 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 44692139 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44692169 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44692954 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44703344 . c cGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44735750 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 44735806 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44783392 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44813794 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 44847630 . t tTCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44853859 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 44866267 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44895656 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44898983 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44906595 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44906626 . T A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44934663 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44955009 . TT TTCTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44963983 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45005486 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45039380 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 45057369 . ga gACGAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45082413 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45083749 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45103768 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45119007 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45135599 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45143690 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45157480 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45185736 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 45207743 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45249128 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45251803 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45320058 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 45321780 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45331944 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 45357413 . A T 32.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 64,6,0:2:0:1/1:49 +chr10 45363773 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45376575 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45380126 . aa aATTAACCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45386177 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 45389704 . T C 43.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 75,6,0:2:0:1/1:49 +chr10 45391509 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45401177 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45401687 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45423282 . C G 25 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,0.064,0.065,1 PL:DP:SP:GT:GQ 55,0,113:7:0:0/1:58 +chr10 45429564 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45430699 . A G 48 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=47;PV4=1,0.0034,0.026,0.36 PL:DP:SP:GT:GQ 78,0,107:7:0:0/1:81 +chr10 45454570 . T TGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45476265 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 45490821 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 45496119 . A T 7.5 . DP=23;AF1=0.5939;CI95=0.5,1;DP4=0,1,1,1;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 36,0,5:3:0:0/1:7 +chr10 45499565 . T C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 45500458 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 45517126 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45531309 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 45554315 . T A 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 45602500 . G A 42.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 74,6,0:2:0:1/1:49 +chr10 45608933 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45622885 . C T 33.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 65,6,0:2:0:1/1:49 +chr10 45629683 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 45637078 . C T 94.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=47 PL:DP:SP:GT:GQ 127,18,0:6:0:1/1:90 +chr10 45637163 . T A 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.017,0.17,1 PL:DP:SP:GT:GQ 30,0,41:3:0:0/1:33 +chr10 45638239 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 45644160 . G GCA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,37:2:0:0/1:39 +chr10 45644923 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 45647012 . A T 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr10 45649852 . tt tTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45665031 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 45676536 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45710533 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45731301 . C T 38 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=6,0,5,0;MQ=48;PV4=1,0.012,0.049,1 PL:DP:SP:GT:GQ 68,0,133:11:0:0/1:71 +chr10 45737350 . A T 13.6 . DP=5;AF1=0.5554;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.22,0.31 PL:DP:SP:GT:GQ 43,0,7:4:0:0/1:10 +chr10 45772951 . cacaa c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 45787780 . CA CAGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45792000 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 45792003 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45799378 . CT CCCTT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45799379 . TGT TGTAGT 4.42 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 45804740 . GCT GCTCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45808324 . tg tGAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45821687 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 45879266 . A T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45879334 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 45882860 . GTTTTT GT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 45907569 . CG CGTG 7.35 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,38:2:0:0/1:40 +chr10 45911521 . g gTTCAGTAC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 45924023 . G A 92.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:DP:SP:GT:GQ 125,12,0:4:0:1/1:72 +chr10 45924333 . T C 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.33,0.0034,1 PL:DP:SP:GT:GQ 31,0,67:5:0:0/1:34 +chr10 45935954 . T A 4.13 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=3,5,0,4;MQ=46;PV4=0.49,0.17,0.26,1 PL:DP:SP:GT:GQ 32,0,150:12:3:0/1:35 +chr10 45935955 . C G 24 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=9,7,0,5;MQ=47;PV4=0.045,0.12,0.0077,0.5 PL:DP:SP:GT:GQ 54,0,255:21:13:0/1:57 +chr10 45941209 . CTG CTGTG 12.7 . INDEL;DP=9;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45956643 . T G 21.1 . DP=9;AF1=0.504;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,1,0.23,0.061 PL:DP:SP:GT:GQ 51,0,18:6:0:0/1:21 +chr10 45959845 . G GT 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45961424 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 45964741 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45966681 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45980109 . G GGCCATCT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 45982239 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 45988742 . A ACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46015159 . t tGTCCGG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 46057661 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 46076841 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 46081072 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 46083766 . ACCTCC AC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46090892 . T TGTAGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46098391 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 46103646 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 46113625 . CA CAGGA 5.08 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,82:3:0:0/1:44 +chr10 46113638 . AT ATCCGAGTCGGT 5.08 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,38:3:0:0/1:39 +chr10 46113639 . TGA TGAGA 3.8 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,59:3:0:0/1:42 +chr10 46134054 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46144015 . T A 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,4;MQ=48;PV4=0.43,0.32,0.027,1 PL:DP:SP:GT:GQ 32,0,55:7:0:0/1:35 +chr10 46202388 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 46202539 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 46217148 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46221477 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 46261311 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 46315109 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46914737 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 46948835 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 46956469 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 46969458 . G GTAGACCACGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46971576 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 46972162 . ac aCCAGc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46974426 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 46976166 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46993338 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 46998346 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46998719 . GTCACTCACT GTCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46998795 . A G 43 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,0,7,0;MQ=49;PV4=1,2.1e-05,0.093,0.22 PL:DP:SP:GT:GQ 73,0,177:14:0:0/1:76 +chr10 46998894 . G A 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,17;MQ=48;PV4=1,3.8e-16,3.8e-06,0.3 PL:DP:SP:GT:GQ 132,0,221:30:0:0/1:99 +chr10 46999198 . G T 8.64 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,1;MQ=49;PV4=1,0.0076,0,0.33 PL:DP:SP:GT:GQ 38,0,41:3:0:0/1:39 +chr10 46999377 . G A,T 21 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 59,15,50,6,0,50:4:0:1/1:63 +chr10 46999382 . G A 3.54 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,4,0;MQ=47;PV4=0.43,1,0.021,1 PL:DP:SP:GT:GQ 31,0,57:7:0:0/1:34 +chr10 46999465 . A G 6.2 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=0,11,0,4;MQ=49;PV4=1,0.0026,0.00045,1 PL:DP:SP:GT:GQ 35,0,210:15:0:0/1:38 +chr10 46999577 . G T 6.2 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=10,1,1,3;MQ=49;PV4=0.033,3.9e-05,0.011,1 PL:DP:SP:GT:GQ 35,0,255:15:15:0/1:38 +chr10 46999591 . CATGAGGGAG CATGAGGGAGATGAGGGAG 99 . INDEL;DP=24;AF1=1;CI95=0.5,1;DP4=1,0,3,5;MQ=50;PV4=0.44,1,1,1 PL:DP:SP:GT:GQ 206,11,0:9:0:1/1:66 +chr10 46999604 . A G 7.8 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=7,0,3,2;MQ=50;PV4=0.15,0.0019,0.17,0.18 PL:DP:SP:GT:GQ 37,0,164:12:8:0/1:40 +chr10 46999747 . T C 20 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=17,20,1,9;MQ=49;PV4=0.065,3.2e-05,8.5e-11,1 PL:DP:SP:GT:GQ 50,0,255:47:12:0/1:53 +chr10 47000004 . T C 99 . DP=33;AF1=1;CI95=0.5,1;DP4=1,1,11,8;MQ=47;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 217,17,0:21:0:1/1:85 +chr10 47005264 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 47014681 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 47038485 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 47056793 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 47087474 . C T 18.6 . DP=78;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,6;MQ=49;PV4=1,0.039,1,1 PL:DP:SP:GT:GQ 48,0,6:7:0:0/1:8 +chr10 47087501 . C T 99 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=17,17,7,19;MQ=48;PV4=0.11,2.6e-09,5.6e-11,1 PL:DP:SP:GT:GQ 248,0,255:60:10:0/1:99 +chr10 47087608 . T C 99 . DP=44;AF1=0.7303;CI95=0.5,1;DP4=1,1,3,9;MQ=48;PV4=0.51,1,0.096,1 PL:DP:SP:GT:GQ 128,0,2:14:3:0/1:3 +chr10 47087680 . C T 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,9,18;MQ=45 PL:DP:SP:GT:GQ 255,81,0:27:0:1/1:99 +chr10 47087731 . C T 99 . DP=62;AF1=1;CI95=1,1;DP4=0,0,34,21;MQ=48 PL:DP:SP:GT:GQ 255,166,0:55:0:1/1:99 +chr10 47087830 . G A 35.5 . DP=81;AF1=0.8277;CI95=0.5,1;DP4=0,1,3,3;MQ=50;PV4=1,0.16,0.36,1 PL:DP:SP:GT:GQ 64,0,1:7:0:1/1:5 +chr10 47094419 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 47094855 . acacccc ac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 47097816 . c cGGTCTTG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 47119108 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 47124144 . T G 63 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=44 PL:DP:SP:GT:GQ 95,9,0:3:0:1/1:63 +chr10 47127875 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 47130982 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 47133818 . G A 12.3 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,5,2,4;MQ=22;PV4=1,0.004,0.076,1 PL:DP:SP:GT:GQ 42,0,81:13:0:0/1:45 +chr10 47141259 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 47144848 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 47151301 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 47162137 . G C 4.13 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=3,4,3,0;MQ=49;PV4=0.2,0.081,0.032,1 PL:DP:SP:GT:GQ 32,0,185:10:7:0/1:35 +chr10 47166232 . G A 27 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,2;MQ=48;PV4=1,0.026,0.099,0.2 PL:DP:SP:GT:GQ 57,0,121:9:0:0/1:60 +chr10 47167115 . G A 15.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=48;PV4=1,0.22,1,0.25 PL:DP:SP:GT:GQ 45,0,65:6:0:0/1:48 +chr10 47193197 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 47193206 . C CCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 47533679 . a aTT 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 47537768 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 47567381 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 47589755 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 47596044 . TG TGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 47610244 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 47663830 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 47664230 . GA GACTCCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 47701205 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 47703041 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 47728608 . T C 47 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=7,4,3,2;MQ=32;PV4=1,1,1,1 PL:DP:SP:GT:GQ 77,0,78:16:0:0/1:77 +chr10 48126719 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 48153406 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 48190102 . C T 3.54 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,28:2:0:0/1:29 +chr10 48255408 . G GCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48318048 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 48318892 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 48319262 . CT CTCTT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 48331324 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 48373600 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 48384075 . T C 53 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,6;MQ=48;PV4=1,0.0031,0.00077,1 PL:DP:SP:GT:GQ 83,0,171:13:0:0/1:86 +chr10 48386110 . T C 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,6,1,13;MQ=48;PV4=1,4.7e-07,0.00011,1 PL:DP:SP:GT:GQ 144,0,145:20:0:0/1:99 +chr10 48386149 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 48388547 . C T 9.52 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 39,0,37:4:0:0/1:38 +chr10 48390890 . G A 28 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,5;MQ=49;PV4=1,0.0014,0.0048,0.022 PL:DP:SP:GT:GQ 58,0,167:11:0:0/1:61 +chr10 48391278 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 48408389 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 48414570 . A G 24 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,6;MQ=49;PV4=1,6.6e-06,0,1 PL:DP:SP:GT:GQ 54,0,227:19:0:0/1:57 +chr10 48420419 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 48426091 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 48431294 . AG AGTCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48431630 . T TGAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48454342 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 48459939 . T TAGTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48475954 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 48479559 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 48488556 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 48499042 . TCT TCTGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48511458 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 48512018 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 48540053 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 48560126 . TT TTTAT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 48588530 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 48592883 . A C 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 48651019 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 48651488 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 49199692 . AAATC A 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 49393736 . T G 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,1,0.096,0.37 PL:DP:SP:GT:GQ 32,0,47:5:0:0/1:35 +chr10 49408308 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 49426735 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 49450443 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49478882 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 49493630 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49537656 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 49549436 . aact aACTGACCact 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49552505 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 49568296 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49613043 . TT TAAGGAT 9.94 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 49614419 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 49632396 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49639932 . ct cTGTGCTCAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49646005 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49649842 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 49654342 . C T 41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 73,9,0:3:0:1/1:63 +chr10 49654403 . C T 83 . DP=20;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=49 PL:DP:SP:GT:GQ 116,51,0:17:0:1/1:99 +chr10 49661341 . A G 99 . DP=32;AF1=1;CI95=1,1;DP4=0,0,22,7;MQ=48 PL:DP:SP:GT:GQ 242,87,0:29:0:1/1:99 +chr10 49666348 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49667713 . G A 17.1 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 49667795 . T C 55.1 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 88,18,0:6:0:1/1:90 +chr10 49687085 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 49687594 . G A 7.59 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 49720206 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49748830 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 49754491 . A T 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 49760281 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 49764654 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 49779004 . C CTTCACTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49790972 . C T 31 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.088,0.016,0.33 PL:DP:SP:GT:GQ 61,0,94:6:0:0/1:64 +chr10 49794358 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 49812913 . C A 4.18 . DP=6;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,2;MQ=39;PV4=1,0.33,0.23,0.33 PL:DP:SP:GT:GQ 32,0,14:3:0:0/1:17 +chr10 49823925 . C T 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 49828914 . CAC CACGCTTATGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49862396 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49863042 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 49871487 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49879482 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 49884974 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 49893296 . C CGA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 49901001 . C CAGTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49914313 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49932611 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 49932799 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49942260 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 49946785 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 49952907 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49960023 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 49960282 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 49969353 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 49971979 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 49972309 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49999675 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50000783 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50008478 . CA CAATTTTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50024289 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50041563 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50085477 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 50095232 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 50104844 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 50121784 . T C 63 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=12,2,10,1;MQ=49;PV4=1,7e-12,0.01,1 PL:DP:SP:GT:GQ 93,0,255:25:0:0/1:96 +chr10 50151003 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50170048 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50171908 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 50189124 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50191543 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50196258 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 50196963 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50221496 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 50227785 . T C 46.5 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=48 PL:DP:SP:GT:GQ 79,12,0:4:0:1/1:72 +chr10 50227927 . C A 33.1 . DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 66,21,0:7:0:1/1:84 +chr10 50262104 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50263483 . A AGTCGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50278385 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50292054 . CTT CTTTCCTCGATTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50299331 . G GT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 50311745 . T C 6.2 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=10,0,4,0;MQ=49;PV4=1,0.1,0.00019,1 PL:DP:SP:GT:GQ 35,0,142:14:0:0/1:38 +chr10 50313012 . ag aGGg 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 50313372 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50313567 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50368313 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50391621 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50409807 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50413409 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50418957 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50440197 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 50461759 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50463994 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50490333 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50510576 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50527891 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50532869 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50557057 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 50559443 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50574798 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50574807 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50576422 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50588349 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50620540 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 50634525 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50648909 . A AGTCCTC 5.08 . INDEL;DP=4;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,1,0;MQ=34;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,30:3:0:0/1:33 +chr10 50666784 . A ACTTCTGG 4.46 . INDEL;DP=6;AF1=0.508;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,15:3:0:0/1:18 +chr10 50667544 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50678252 . A T 3.01 . DP=19;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,1,2;MQ=48;PV4=0.067,0.14,1,1 PL:DP:SP:GT:GQ 30,0,126:10:12:0/1:33 +chr10 50678317 . C G 81 . DP=83;AF1=0.5002;CI95=0.5,0.5;DP4=2,1,16,3;MQ=49;PV4=0.47,0.001,0.12,1 PL:DP:SP:GT:GQ 111,0,31:22:3:0/1:34 +chr10 50679040 . T G 17.1 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,0,0,4;MQ=49;PV4=0.0048,0.025,0.03,1 PL:DP:SP:GT:GQ 47,0,149:10:23:0/1:50 +chr10 50679878 . T C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50691360 . T C 65 . DP=20;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=48 PL:DP:SP:GT:GQ 98,24,0:8:0:1/1:96 +chr10 50708114 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50712789 . TCTG T 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 50717628 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50724016 . C T 5.29 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 50741083 . A G 49.3 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 82,15,0:5:0:1/1:75 +chr10 50743577 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 50762600 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50792515 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50810610 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50820345 . C A 99 . DP=16;AF1=1;CI95=0.5,1;DP4=0,1,9,4;MQ=48;PV4=0.36,0.15,0.22,1 PL:DP:SP:GT:GQ 152,14,0:14:0:1/1:70 +chr10 50828506 . G A 15.3 . DP=14;AF1=0.5207;CI95=0.5,1;DP4=1,0,4,0;MQ=47;PV4=1,0.16,1,1 PL:DP:SP:GT:GQ 45,0,11:5:0:0/1:14 +chr10 50838972 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50841099 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50852223 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 50856120 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 50856652 . G A 54.5 . DP=10;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,5;MQ=47;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 84,2,0:6:0:1/1:37 +chr10 50856659 . TCTG T 7.42 . INDEL;DP=8;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr10 50857973 . GG GGTTACATTTTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50863051 . A C 49 . DP=14;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,6,0;MQ=47;PV4=1,1,0.023,0.23 PL:DP:SP:GT:GQ 79,0,19:8:0:0/1:22 +chr10 50863147 . T C 95 . DP=46;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=48 PL:DP:SP:GT:GQ 128,24,0:8:0:1/1:96 +chr10 50863565 . C T 26 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.067,0.3,0.29 PL:DP:SP:GT:GQ 56,0,38:4:0:0/1:41 +chr10 50870751 . A G 18.1 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=13,2,0,8;MQ=49;PV4=9.2e-05,0.00029,7.3e-05,1 PL:DP:SP:GT:GQ 48,0,252:23:40:0/1:51 +chr10 50890496 . g gATCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50901809 . T G 52 . DP=29;AF1=0.9999;CI95=0.5,1;DP4=1,0,0,8;MQ=48;PV4=0.11,0.36,0.17,1 PL:DP:SP:GT:GQ 82,3,0:9:0:1/1:41 +chr10 50902684 . C T 99 . DP=41;AF1=1;CI95=1,1;DP4=0,1,0,30;MQ=46;PV4=1,1,0.088,1 PL:DP:SP:GT:GQ 187,77,0:31:0:1/1:99 +chr10 50909290 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 50916484 . A G 54.1 . DP=68;AF1=1;CI95=1,1;DP4=1,1,19,0;MQ=49;PV4=0.095,0.31,0.19,1 PL:DP:SP:GT:GQ 87,19,0:21:0:1/1:76 +chr10 50916542 . C T 68.8 . DP=57;AF1=1;CI95=0.5,1;DP4=0,1,2,8;MQ=49;PV4=1,0.23,0.31,1 PL:DP:SP:GT:GQ 101,10,0:11:0:1/1:60 +chr10 50921374 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50936620 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50944009 . T C 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=42 PL:DP:SP:GT:GQ 182,24,0:8:0:1/1:96 +chr10 50947918 . A G 35.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=50 PL:DP:SP:GT:GQ 68,18,0:6:0:1/1:90 +chr10 50955061 . CC CCCCCGC 7.46 . INDEL;DP=17;AF1=0.5163;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 50971535 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 50980097 . T A,G 16.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=44 PL:DP:SP:GT:GQ 59,17,47,11,0,47:3:0:1/1:49 +chr10 50991686 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 51011952 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 51023268 . TG TGTGG 7.35 . INDEL;DP=3;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,25:2:0:0/1:28 +chr10 51052856 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 51059525 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51118047 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51362108 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 51374389 . G C 6.2 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,1,1;MQ=48;PV4=0.4,0.045,0.12,0.39 PL:DP:SP:GT:GQ 35,0,99:5:0:0/1:38 +chr10 51378214 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 51381775 . T G 16.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,0;MQ=47;PV4=0.4,0.19,0.11,0.077 PL:DP:SP:GT:GQ 46,0,46:5:0:0/1:46 +chr10 51383614 . G C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 51384373 . A G 13.2 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 51384388 . GTTAA GTTAACTTAA 4.42 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 51384392 . AAG AAGGCCAG 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 51388556 . T TAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 51396109 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 51503381 . T TACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 51511273 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 51515620 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 51532367 . A G 38 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,6,1,6;MQ=35;PV4=0.34,8.9e-05,0.0047,0.32 PL:DP:SP:GT:GQ 68,0,219:17:5:0/1:71 +chr10 51549496 . T C 55 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,10,0;MQ=48;PV4=1,1.2e-07,8.1e-16,1 PL:DP:SP:GT:GQ 85,0,196:19:0:0/1:88 +chr10 51549545 . G T 97 . DP=39;AF1=1;CI95=1,1;DP4=0,0,12,1;MQ=49 PL:DP:SP:GT:GQ 130,39,0:13:0:1/1:99 +chr10 51563835 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 51583018 . CATT C 54.5 . INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=50;PV4=1,0.00031,0.1,0.33 PL:DP:SP:GT:GQ 92,0,189:11:0:0/1:95 +chr10 51610365 . TT TTGT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 51610507 . C T 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.046,0.33,1 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr10 51613231 . T C 7.8 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,1;MQ=48;PV4=1,0.16,0,1 PL:DP:SP:GT:GQ 37,0,66:4:0:0/1:40 +chr10 51620350 . T C 4.13 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,0,2;MQ=48;PV4=0.33,0.05,0.092,1 PL:DP:SP:GT:GQ 32,0,72:4:5:0/1:35 +chr10 51629295 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51644038 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51650246 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 51676639 . aa aAATCGTGTa 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 51677212 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 51679838 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 51682365 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 51685245 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51738537 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 51768674 . CAAA CA 15.6 . INDEL;DP=5;AF1=0.6671;CI95=0.5,1;DP4=2,0,1,2;MQ=32;PV4=0.4,0.15,1,1 PL:DP:SP:GT:GQ 52,0,3:5:4:0/1:5 +chr10 51786463 . G A 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 51787710 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52005242 . C CTCCTTT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 38,0,107:4:0:0/1:41 +chr10 52007620 . a aGTACAGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 52031581 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52067059 . ATCT AT 4.42 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=4,4,3,0;MQ=50;PV4=0.24,1,1,0.4 PL:DP:SP:GT:GQ 40,0,132:11:6:0/1:43 +chr10 52067074 . T G 26 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,6;MQ=46;PV4=0.033,0.025,0.17,0.46 PL:DP:SP:GT:GQ 56,0,72:10:15:0/1:59 +chr10 52067075 . T G 20 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=4,6,0,5;MQ=47;PV4=0.23,0.19,1,1 PL:DP:SP:GT:GQ 50,0,174:15:6:0/1:53 +chr10 52072803 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 52076422 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 52091852 . a aGAAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52121065 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52142114 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 52146509 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 52157658 . A ACTAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52210039 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52213868 . G C 5.47 . DP=2;AF1=0.5007;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,25:2:0:0/1:27 +chr10 52267179 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52274303 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 52276837 . A AATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52314980 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52326199 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52346890 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52364905 . C CT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 52385653 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52390407 . G C 11.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,0.38,0.16,1 PL:DP:SP:GT:GQ 41,0,93:6:0:0/1:44 +chr10 52390836 . A G 65.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=48 PL:DP:SP:GT:GQ 98,15,0:5:0:1/1:75 +chr10 52400608 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 52411197 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 52419433 . G C,T 3.41 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 42,16,31,10,0,31:3:0:1/1:49 +chr10 52438942 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52486716 . G GGCC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.34 PL:DP:SP:GT:GQ 38,0,80:4:0:0/1:41 +chr10 52486792 . G A 36 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,1;MQ=48;PV4=1,0.06,0.068,1 PL:DP:SP:GT:GQ 66,0,73:5:0:0/1:68 +chr10 52502787 . tgtgcgtgcgtgcgtgcgtg tgtgcgtgcgtgcgtg 5.08 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=32;PV4=1,1,0.048,1 PL:DP:SP:GT:GQ 41,0,94:11:0:0/1:44 +chr10 52505273 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52506074 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52553649 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52566594 . G C 99 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=17,25,15,13;MQ=48;PV4=0.33,1.4e-14,5.7e-16,1 PL:DP:SP:GT:GQ 253,0,255:70:5:0/1:99 +chr10 52576068 . G A 97 . DP=39;AF1=1;CI95=1,1;DP4=0,1,0,31;MQ=48;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 130,79,0:32:0:1/1:99 +chr10 52593210 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52604764 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52619758 . T A 3.55 . DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,1,0,1 PL:DP:SP:GT:GQ 31,0,26:4:0:0/1:28 +chr10 52620815 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 52638515 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 52646304 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52646978 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52650361 . A AAATTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52669948 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 52674322 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52684875 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52691160 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 52775286 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52805500 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52861101 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52887108 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52891444 . A ATCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52902274 . g gCTGACC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52911674 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 52932813 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52969600 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53063556 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53068694 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53088211 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 53143038 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 53156863 . t tAAATTAAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 53171754 . C CGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 53182209 . CCT CCTAAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53206469 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53206474 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53227627 . T G 3.98 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 53279059 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53297488 . a aTCACTCGACTCACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53308080 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 53343623 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53360727 . G T 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53398853 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 53408380 . C CCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53417659 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53417886 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53422219 . TG TGATCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53438703 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 53457421 . A G 3.01 . DP=21;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,0.25,0.037,1 PL:DP:SP:GT:GQ 30,0,65:5:0:0/1:33 +chr10 53462957 . aata aATata 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53492814 . T G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53593551 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53620305 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53629139 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 53662270 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 53666283 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 53699869 . C A 10.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 53719492 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53739361 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53753112 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53758793 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 53764987 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53767895 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 53770946 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 53816889 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53817077 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 53819444 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53886171 . t tTCCTGAAAC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 53895379 . A ACTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53903748 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 53910290 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53910309 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53965920 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 54021363 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54032269 . A G 32 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,11;MQ=50;PV4=1,3.6e-16,0.18,1 PL:DP:SP:GT:GQ 62,0,189:19:0:0/1:65 +chr10 54041759 . T TAACAACAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54060043 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 54069505 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54148888 . C A 47 . DP=11;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=38 PL:DP:SP:GT:GQ 80,33,0:11:0:1/1:99 +chr10 54171074 . AC ACCC 6.55 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,40:2:0:0/1:41 +chr10 54198253 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 54198907 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 54221969 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 54240122 . caa cAAAaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54258423 . tct tCTCATACct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54262016 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 54278577 . a aGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 54330007 . GTTTTT GTTTTTTT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 54351043 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 54359378 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 54380104 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54380375 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 54389841 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54435325 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54458439 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54463840 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54474588 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 54480153 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54512618 . TGCAGTC T 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 54513379 . ta tAGTGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54528266 . G C 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=45 PL:DP:SP:GT:GQ 190,24,0:8:0:1/1:96 +chr10 54528298 . G C 96 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=47 PL:DP:SP:GT:GQ 129,24,0:8:0:1/1:96 +chr10 54528353 . C G 69.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 102,21,0:7:0:1/1:84 +chr10 54530636 . A G 10.2 . DP=13;AF1=0.6243;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.24,1 PL:DP:SP:GT:GQ 39,0,4:4:0:0/1:6 +chr10 54548708 . T C 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 54578598 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54596759 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54654033 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 54666460 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54674396 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54677033 . A AGT 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 54677683 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 54683843 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54714977 . tgaa tGAATAgaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54826592 . T TCCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54866275 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 54869796 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 54880850 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54885272 . C CGAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54885341 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54885350 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54920991 . T TCGTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54927684 . AGT AGTCTTGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54938997 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 54955102 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54966229 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 55003777 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 55007597 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55011177 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 55012422 . tga tGAGTTCTGga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55020162 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 55062508 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55104797 . c cTATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55122639 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 55150676 . tgtggt tgt 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 55242189 . ta tACa 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 55303712 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 55343940 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 55389450 . G A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 55403276 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 55411325 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 55425031 . aat aATCCTat 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55436299 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55447073 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55481535 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 55506732 . a aGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55539078 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 55568880 . C G 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 55582905 . G T 55.1 . DP=44;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=49 PL:DP:SP:GT:GQ 88,18,0:6:0:1/1:90 +chr10 55617054 . T C 35 . DP=21;AF1=0.5016;CI95=0.5,0.5;DP4=0,2,0,6;MQ=49;PV4=1,0.19,0.097,1 PL:DP:SP:GT:GQ 65,0,22:8:0:0/1:25 +chr10 55643054 . CA CAATATGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55719652 . C T 56 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=50 PL:DP:SP:GT:GQ 89,27,0:9:0:1/1:99 +chr10 55720489 . G GATCTGAAGACTGTA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 55721679 . T G 13 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 55757997 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55779909 . G C 35 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,0,8,0;MQ=49;PV4=1,0.0018,0.047,0.41 PL:DP:SP:GT:GQ 65,0,106:15:0:0/1:68 +chr10 55782196 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 55782991 . C T 42 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=49;PV4=1,7.3e-05,0.023,0.49 PL:DP:SP:GT:GQ 72,0,132:9:0:0/1:75 +chr10 55893518 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 55911601 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 55924765 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 55938318 . A ACAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55955444 . T G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,17,1;MQ=45 PL:DP:SP:GT:GQ 220,54,0:18:0:1/1:99 +chr10 55980073 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 55990923 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 56026915 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 56029516 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 56038509 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 56045466 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56047358 . T TCA 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 56050369 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 56094727 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 56094737 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 56100959 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 56129066 . A G 43 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=48;PV4=1,0.093,0.027,0.23 PL:DP:SP:GT:GQ 73,0,97:9:0:0/1:76 +chr10 56141189 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 56171592 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 56188435 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 56188485 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 56219670 . TT TTACATAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 56244889 . AT ATTGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 56248862 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56271612 . AA AATGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 56287569 . T C 80 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=6,1,5,2;MQ=48;PV4=1,0.047,0.00093,0.35 PL:DP:SP:GT:GQ 110,0,153:14:0:0/1:99 +chr10 56287689 . A C 16.1 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr10 56300684 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 56301556 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56310053 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56374517 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 56399546 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 56403219 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56437620 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56437633 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56444029 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56472510 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 56473789 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56510130 . TT TTTCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 56538467 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 56541456 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 56628184 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 56693376 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 56702663 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56767962 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56770523 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56807321 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 56840259 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 56847051 . T TTAG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 56848425 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 56903981 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56963272 . g gCC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 56972063 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56983342 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56984145 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57018227 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57044209 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 57050326 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57093281 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 57104106 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 57164947 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 57164954 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 57206158 . G T,C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 46,18,31,15,0,31:2:0:1/1:41 +chr10 57206560 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 57224742 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57273633 . A ACCGGTGTGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 57283077 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 57283095 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 57345114 . A AGCGAGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 57427218 . C CAAACGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 57427259 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 57433589 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 57437377 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 57450039 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 57514504 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 57587744 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 57618044 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57638703 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57768431 . GCT G 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 57785494 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 57798043 . cagaga caga 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 57828560 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 57834675 . AA AAATCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 57836769 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 57884344 . tc tCTGCTAGCGTCc 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 57962283 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 57986270 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58002958 . t tGTCTAGG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58047027 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 58056289 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 58118458 . A C 7.8 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=14,1,0,5;MQ=49;PV4=0.00039,0.006,0.012,1 PL:DP:SP:GT:GQ 37,0,238:20:34:0/1:40 +chr10 58118630 . T C 6.33 . DP=48;AF1=0.5206;CI95=0.5,1;DP4=0,1,2,1;MQ=50;PV4=1,0.021,1,1 PL:DP:SP:GT:GQ 35,0,11:4:0:0/1:14 +chr10 58119976 . G A 49.1 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=49 PL:DP:SP:GT:GQ 82,18,0:6:0:1/1:90 +chr10 58120988 . C A 55 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=5,23,1,7;MQ=48;PV4=1,4e-06,2.6e-05,1 PL:DP:SP:GT:GQ 85,0,255:36:0:0/1:88 +chr10 58137797 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 58152746 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 58190497 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58237045 . TT TTCAGTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58289254 . t tGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 58296043 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 58316378 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58362159 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58381243 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 58425293 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 58428951 . g gAGACTGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 58458475 . C CGTCCAGGGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58511227 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58514798 . TCtct TCTCTACtct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58606573 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 58606768 . t tTATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58667494 . a aTC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 58682099 . CCTTTA C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58684651 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 58688414 . gg gGTGTAACg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58711866 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58716548 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 58719064 . C G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 58757911 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 58775391 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58784593 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 58784692 . t tGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58805037 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 58873812 . CTACTTGG C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58895439 . c cAGGGCCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58897984 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 58955004 . CTAACT C 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 58961153 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 58963872 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58996140 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59015063 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 59027763 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59066266 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 59104155 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59113519 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59138064 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 59150702 . CT CTGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59176615 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 59222037 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 59225619 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 59241230 . A AGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59272498 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59276578 . ag aGCg 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 59348187 . a aCTTGCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59350671 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59384292 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59409575 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59434994 . A AACTCATACC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 59441447 . A T 4.8 . DP=3;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.26,0.23,0.44 PL:DP:SP:GT:GQ 33,0,16:3:0:0/1:19 +chr10 59496132 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59499258 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 59511633 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59523527 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 59533993 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59535213 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 59595571 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59617927 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 59652840 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59675969 . G GAGGCCGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59680886 . g gAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59750203 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 59767938 . CA CAGAGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59845324 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 59873087 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 59875795 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 59948078 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59951636 . G C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 59956043 . T TATG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59958956 . C A 14.2 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.021,0.092,1 PL:DP:SP:GT:GQ 44,0,99:6:0:0/1:47 +chr10 59965761 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 59980002 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59984326 . A C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 59999546 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 60027213 . C G 17.1 . DP=9;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,0,3;MQ=46;PV4=0.25,0.026,0.1,1 PL:DP:SP:GT:GQ 47,0,32:4:0:0/1:35 +chr10 60036815 . A G 55 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,0,7,0;MQ=49;PV4=1,2.6e-05,0.061,1 PL:DP:SP:GT:GQ 85,0,147:12:0:0/1:88 +chr10 60036961 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60063738 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60080219 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60091347 . CCT CCTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 60124520 . T G 7.85 . DP=6;AF1=0.508;CI95=0.5,0.5;DP4=1,0,2,0;MQ=44;PV4=1,1,0,1 PL:DP:SP:GT:GQ 37,0,15:3:0:0/1:18 +chr10 60124530 . G C 5.46 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,2,0;MQ=47;PV4=1,0.013,0,1 PL:DP:SP:GT:GQ 34,0,131:6:0:0/1:37 +chr10 60127793 . T G 6.02 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 60128470 . G A 7.59 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 60128474 . C G 22 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=49;PV4=1,0.25,0.07,0.069 PL:DP:SP:GT:GQ 52,0,67:6:0:0/1:55 +chr10 60141943 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 60146076 . C T 6.98 . DP=11;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.087,0.3,1 PL:DP:SP:GT:GQ 36,0,31:3:0:0/1:33 +chr10 60146081 . T A,G 5.29 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 45,16,34,10,0,34:3:0:1/1:49 +chr10 60148606 . TT TCTCTTGGT 5.09 . INDEL;DP=9;AF1=0.5025;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,20:3:0:0/1:23 +chr10 60206169 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 60206264 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 60235696 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 60237878 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 60273189 . ACGGCCGGCCGG ACGGCCGG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 60310156 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60322917 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 60338911 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 60383162 . ACT ACTTCT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 60397511 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 60410887 . g gTCAAGTGCGGGCGGA 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 60423915 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60425966 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 60515252 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 60521389 . GT GTGTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 60542330 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60559910 . A G 6.79 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 60562252 . AC ACTC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 60563062 . G C 22 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,6;MQ=50;PV4=1,4.6e-13,1,0.38 PL:DP:SP:GT:GQ 52,0,102:9:0:0/1:55 +chr10 60612887 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 60642629 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60650515 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 60673194 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 60692494 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60718566 . CT CTCAATTTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 60729663 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 60767341 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60797364 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 60818478 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 60837797 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 60839743 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 60840745 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60848772 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60848788 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 60873443 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 60883204 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 60897975 . CA CAAA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.23 PL:DP:SP:GT:GQ 41,0,77:3:0:0/1:44 +chr10 60905529 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 60920725 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60937151 . AA AAGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 60985996 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 60987012 . C A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60996453 . G A 69 . DP=24;AF1=1;CI95=1,1;DP4=0,1,0,13;MQ=49;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 102,25,0:14:0:1/1:99 +chr10 60996454 . T C 44 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,6;MQ=48;PV4=1,0.21,0.0063,0.24 PL:DP:SP:GT:GQ 74,0,111:13:0:0/1:77 +chr10 61005244 . G C 99 . DP=40;AF1=1;CI95=1,1;DP4=0,0,5,22;MQ=48 PL:DP:SP:GT:GQ 230,81,0:27:0:1/1:99 +chr10 61011286 . C T 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.38,0,1 PL:DP:SP:GT:GQ 31,0,71:3:0:0/1:34 +chr10 61047529 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61062538 . T C 51 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=9,0,10,0;MQ=49;PV4=1,6.4e-06,0.081,1 PL:DP:SP:GT:GQ 81,0,190:19:0:0/1:84 +chr10 61075720 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61079827 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61083689 . CAG CAGTTAG 38.7 . INDEL;DP=28;AF1=0.5263;CI95=0.5,1;DP4=3,0,17,0;MQ=50;PV4=1,0.0041,1,1 PL:DP:SP:GT:GQ 76,0,10:20:0:0/1:13 +chr10 61083690 . AG AGTTGG 99 . INDEL;DP=28;AF1=0.5;CI95=0.5,0.5;DP4=4,0,19,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 235,0,37:23:0:0/1:40 +chr10 61114221 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61122268 . TG TTAG,TGTTAG 99 . INDEL;DP=11;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=50 PL:DP:SP:GT:GQ 242,47,204,23,0,201:9:0:1/1:96 +chr10 61135422 . aag aAGGag 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 61147791 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61149934 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61150029 . a aGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61211853 . C G 6.98 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,34:2:0:0/1:35 +chr10 61267873 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61274360 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61304196 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61311416 . TAAA TAA 46.5 . INDEL;DP=5;AF1=0.5064;CI95=0.5,0.5;DP4=1,0,1,3;MQ=50;PV4=0.4,0.18,1,1 PL:DP:SP:GT:GQ 84,0,16:5:0:0/1:19 +chr10 61317423 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61321730 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61323292 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61323303 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61346065 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61363799 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61388421 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 61395859 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61400896 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 61419418 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61424464 . TGT TGTGAGGCAGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61438266 . T TCCCGAAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61443790 . CATGAT C 31.5 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,0,9,0;MQ=50;PV4=1,4.1e-13,1,1 PL:DP:SP:GT:GQ 69,0,130:15:0:0/1:72 +chr10 61443791 . ATGATGT AT 99 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 150,0,145:12:0:0/1:99 +chr10 61445020 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61460488 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61485881 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61552774 . C T 65.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:DP:SP:GT:GQ 98,12,0:4:0:1/1:72 +chr10 61552878 . G A 4.77 . DP=16;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,3;MQ=50;PV4=1,0.0038,0.34,0.25 PL:DP:SP:GT:GQ 33,0,31:5:0:0/1:32 +chr10 61554656 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61559913 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 61563994 . GCATTT G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61605201 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61615695 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61626698 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61635204 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 61665886 . C A 7.59 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 61669558 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61695487 . G T 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,32:2:0:0/1:31 +chr10 61703035 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61717196 . tt tTGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61729814 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61745781 . CT CTAGCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61769643 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 61802577 . TCC TCCC 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=50 PL:DP:SP:GT:GQ 187,39,0:13:0:1/1:99 +chr10 61803480 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61808999 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61815335 . C A,G 58.1 . DP=25;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 91,21,83,0,4,83:8:0:1/1:84 +chr10 61815817 . T G 21 . DP=14;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,4;MQ=49;PV4=1,1,0.0035,0.4 PL:DP:SP:GT:GQ 51,0,35:7:0:0/1:38 +chr10 61819049 . T G 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=47 PL:DP:SP:GT:GQ 149,51,0:17:0:1/1:99 +chr10 61833499 . G A 81 . DP=14;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,1,5;MQ=46;PV4=1,0.47,0.095,0.37 PL:DP:SP:GT:GQ 111,0,31:8:0:0/1:34 +chr10 61851446 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61868628 . T C 5.46 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=1,14,5,0;MQ=48;PV4=0.00039,6.8e-05,0.00061,1 PL:DP:SP:GT:GQ 34,0,251:20:34:0/1:37 +chr10 61873922 . T TCAGCC 7.38 . INDEL;DP=3;AF1=0.504;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr10 61881050 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 61932651 . C A 3.54 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=7,2,4,0;MQ=50;PV4=1,0.039,0.0093,1 PL:DP:SP:GT:GQ 31,0,211:13:0:0/1:34 +chr10 61932898 . T A 26 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,6;MQ=49;PV4=0.015,0.006,0.0006,1 PL:DP:SP:GT:GQ 56,0,145:12:18:0/1:59 +chr10 61954728 . G GGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61981768 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61983598 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61984464 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61987179 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 62023124 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 62075856 . T TCCAGGACCGA 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 62134348 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62149298 . A T 22 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,6;MQ=48;PV4=1,0.24,0.13,0.43 PL:DP:SP:GT:GQ 52,0,114:13:0:0/1:55 +chr10 62161615 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 62170502 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 62191056 . ca cAAAa 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 62213555 . TGT TGTCGGCGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62253950 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 62270896 . A G 58.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=46 PL:DP:SP:GT:GQ 91,12,0:4:0:1/1:72 +chr10 62292865 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 62293910 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62354614 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 62371485 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 62409299 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 62432727 . G GCAGAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62444260 . G C 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,2,0;MQ=49;PV4=1,0.14,0.019,0.34 PL:DP:SP:GT:GQ 33,0,69:4:0:0/1:36 +chr10 62511198 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62515649 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 62536309 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 62538789 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 62544394 . a aCACCCTTG 9.94 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 62547446 . AAGATAGA AAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62548056 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 62551888 . T C 4 . DP=7;AF1=0.6241;CI95=0.5,1;DP4=0,1,0,2;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 31,0,4:3:0:0/1:6 +chr10 62552102 . C G 4.77 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=46;PV4=1,0.049,0.29,1 PL:DP:SP:GT:GQ 33,0,60:4:0:0/1:36 +chr10 62552869 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 62553763 . A G 86 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=48 PL:DP:SP:GT:GQ 119,30,0:10:0:1/1:99 +chr10 62567662 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 62586976 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62606133 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 62634029 . T TCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62677221 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 62701621 . AA AACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62760031 . T TCTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62789037 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62794334 . gccttcc gcc 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=32;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,50:4:0:0/1:41 +chr10 62818299 . G C 41.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=43 PL:DP:SP:GT:GQ 73,6,0:2:0:1/1:49 +chr10 62847818 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62860480 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 62895703 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62918436 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 63001707 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 63031689 . a aCC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 63045200 . T TAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63061873 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63104320 . ac aCCCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63106386 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 63146297 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 63173823 . AG AGCCCACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63182262 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63221288 . ACC ACCCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 63235284 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 63246872 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63284095 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63306445 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 63309218 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 63348139 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 63379518 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 63403314 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63415052 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 63426338 . G GACTCTCTGAGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 63457041 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 63460739 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 63463451 . G GTACGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63468360 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 63495819 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 63508178 . T TCTATTTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63512959 . t tGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63513726 . GG GGTACACCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63518225 . GA GAACTCTCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63520528 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63528952 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 63549264 . CAAA C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63565787 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63574929 . A T 12 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 63591106 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 63593843 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 63614031 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 63621976 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 63650113 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63652467 . g gTAACACGGAACGGA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 63658357 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63675210 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63692739 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63701990 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63703080 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63713158 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63730615 . TT TTCTCTTTGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63806507 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63821073 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63824104 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 63835020 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 63835599 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 63848271 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 63889416 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 63890261 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63907527 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63958112 . T C 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,1,14;MQ=48 PL:DP:SP:GT:GQ 175,45,0:15:0:1/1:99 +chr10 63977069 . A T 10.2 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 63990895 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 63995983 . C T 94.8 . DP=15;AF1=1;CI95=0.5,1;DP4=0,1,2,9;MQ=48;PV4=1,0.27,0.22,1 PL:DP:SP:GT:GQ 127,10,0:12:0:1/1:60 +chr10 64005711 . C T 81.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=46 PL:DP:SP:GT:GQ 114,18,0:6:0:1/1:90 +chr10 64010721 . t tAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 64034519 . A AAAGGACCTCATTTC 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 64038421 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64051164 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64052520 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64066395 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64117528 . t tAAGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64135376 . T TGCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64159333 . G T 47.3 . DP=44;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=50 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr10 64167301 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64174449 . C T 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 64193764 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64225887 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 64226970 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 64269296 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 64299711 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64342059 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64345501 . C CGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64375627 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 64377746 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64414787 . a aAG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 64415184 . A G 99 . DP=46;AF1=1;CI95=1,1;DP4=0,0,32,11;MQ=48 PL:DP:SP:GT:GQ 248,129,0:43:0:1/1:99 +chr10 64480121 . cca cCAATca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64482642 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64484231 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64501053 . G A 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,1,0;MQ=48;PV4=1,1,0,0.42 PL:DP:SP:GT:GQ 31,0,109:4:0:0/1:34 +chr10 64508091 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 64522357 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 64573771 . C T 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,0,23;MQ=43 PL:DP:SP:GT:GQ 233,69,0:23:0:1/1:99 +chr10 64604771 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64624449 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 64637923 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 64638789 . T TCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64651962 . T TAG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 64698607 . G GTCACTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64717309 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64717776 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64762268 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 64779563 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64783988 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 64793933 . a aAGGGTCAACC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 64797593 . A T 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=36 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 64802638 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64826075 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 64833216 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 64835044 . GT GTGCGGGGAT 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 64835759 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64851043 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64927247 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 64927823 . C G 64.2 . DP=33;AF1=1;CI95=0.5,1;DP4=1,0,6,1;MQ=49;PV4=1,1,0.38,1 PL:DP:SP:GT:GQ 96,8,0:8:0:1/1:56 +chr10 64931548 . T TACGGTGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64953311 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 64956072 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64960105 . A AGTAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64967445 . A T 99 . DP=49;AF1=1;CI95=1,1;DP4=0,0,23,17;MQ=49 PL:DP:SP:GT:GQ 246,120,0:40:0:1/1:99 +chr10 64969044 . A G 6.2 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,7;MQ=49;PV4=1,0.099,0.11,0.035 PL:DP:SP:GT:GQ 35,0,52:10:0:0/1:38 +chr10 64971149 . c cAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64974537 . A T 45 . DP=58;AF1=0.9999;CI95=0.5,1;DP4=1,0,1,7;MQ=49;PV4=0.22,0.16,0.29,1 PL:DP:SP:GT:GQ 75,3,0:9:0:1/1:41 +chr10 64974805 . GTCT GTCTCT 9.94 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 64974806 . TC TCGGC 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64977091 . C G 20 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,5,1,5;MQ=48;PV4=1,0.0063,0.19,1 PL:DP:SP:GT:GQ 50,0,121:11:0:0/1:53 +chr10 64977098 . A C 4.18 . DP=9;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.33,0.33,1 PL:DP:SP:GT:GQ 32,0,14:3:0:0/1:17 +chr10 65064511 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65091664 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 65119723 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 65157847 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65164985 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65177349 . A ATCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65187315 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65187461 . C G,T 35 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 75,17,64,8,0,64:4:0:1/1:63 +chr10 65190093 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65191254 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 65202282 . T TCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65261533 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 65268615 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 65271683 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 65278034 . ac aCAGGAAAATc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65306223 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 65314995 . C CGCTACT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 65394230 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 65394396 . T G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,41:2:0:0/1:33 +chr10 65444395 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 65447674 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65464957 . T TCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65480670 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65484481 . ACAAGCATT A 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 65487533 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65503789 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65590005 . T TTCGCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65635400 . g gGTTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65656518 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 65658505 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65669796 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 65713058 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65729539 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65729549 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 65731897 . a aCCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65759820 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 65763161 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65765061 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65765096 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 65800840 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65825190 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 65826980 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65878025 . A G 15.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=34 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 65920042 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 65934710 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65960343 . CA CAGTGGA 9.15 . INDEL;DP=2;AF1=0.9966;CI95=0.5,1;DP4=1,0,1,0;MQ=35;PV4=1,1,1,1 PL:DP:SP:GT:GQ 45,1,0:2:0:1/1:23 +chr10 65991890 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 65994891 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65996463 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 65998090 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65998100 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66004970 . ca cAAAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66014438 . G GCGCGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66025205 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66029334 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 66029353 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 66052641 . T G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 66067759 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 66072643 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66074579 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 66092599 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 66258165 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66301546 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 66403693 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66403980 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 66404486 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 66420848 . ac aCGAGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66446804 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 66476178 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 66497599 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 66513270 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66538896 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 66591190 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 66600609 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 66618363 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 66660428 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 66702852 . A AGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66726629 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 66783222 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 66802731 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66897772 . attttttt att 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66904314 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 66929672 . tt tTCt 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,40:2:0:0/1:42 +chr10 66956997 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 66961970 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 66978656 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 66994350 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 67050070 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67058950 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 67070954 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 67076213 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67156490 . TT TTTCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 67182544 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 67200445 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67233312 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 67366586 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67374890 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 67377968 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67423164 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67537692 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67560481 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67566065 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67604139 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67605319 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 67610034 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 67617331 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 67640537 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 67651762 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67653918 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 67664435 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67664612 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 67727695 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 67739454 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67745735 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 67750467 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 67751746 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 67752355 . t tATTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 67859075 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67935751 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67989635 . c cGG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 67999488 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68067183 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68075387 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68084447 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68084455 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68096587 . t tTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68160724 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 68170100 . T TCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68172583 . AAAACTTGAAA AAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68238185 . tg tGCCAAAGg 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 68259363 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 68307459 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68362003 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68431757 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68467846 . C CTGTCCCCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68476376 . C T 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 68495199 . tt tTGCGAAGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68499571 . T A 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68512804 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 68524803 . GA GACACCCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68532371 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68539531 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 68615212 . A ACCGTGTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68653396 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 68686432 . T C 26 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr10 68688238 . C G 12.3 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,4;MQ=48;PV4=1,0.1,0.0067,1 PL:DP:SP:GT:GQ 42,0,161:14:0:0/1:45 +chr10 68688243 . A C 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=46;PV4=1,0.41,0.074,0.47 PL:DP:SP:GT:GQ 41,0,48:6:0:0/1:43 +chr10 68720242 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68748599 . CT CTACGTGCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68791118 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 68811077 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 68852676 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 68857397 . T G 99 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=15,15,13,12;MQ=49;PV4=1,1.6e-18,5.1e-07,1 PL:DP:SP:GT:GQ 224,0,255:55:0:0/1:99 +chr10 68902063 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68931758 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 68941282 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68984539 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 69024876 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69040036 . a aCATGCCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69099870 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 69111677 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 69115122 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69120787 . aa aAACTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69127383 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69141513 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69163946 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 69186601 . TG TGAG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 69216224 . AAATAT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69258113 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 69258118 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69281495 . C G 4.61 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 69299371 . T C 3.54 . DP=21;AF1=0.4998;CI95=0.5,0.5;DP4=9,2,0,4;MQ=49;PV4=0.011,0.036,0.0093,1 PL:DP:SP:GT:GQ 31,0,217:15:20:0/1:34 +chr10 69319559 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 69389493 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 69407167 . T G 4.13 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.063,0.37,1 PL:DP:SP:GT:GQ 32,0,147:10:0:0/1:35 +chr10 69407327 . A G 4.77 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.11,0.48,1 PL:DP:SP:GT:GQ 33,0,91:7:0:0/1:36 +chr10 69467603 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 69510918 . CA CAA 3.25 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69528983 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69529858 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 69565429 . CTCTTTCTTTCTTTCT CTCTTTCTTTCT 7.35 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 69575814 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 69583206 . G A 6.23 . DP=5;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.029,0.33,1 PL:DP:SP:GT:GQ 35,0,17:4:0:0/1:20 +chr10 69621932 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 69627866 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 69665828 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69672671 . T C 18.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=7,4,0,6;MQ=49;PV4=0.035,0.016,0.094,1 PL:DP:SP:GT:GQ 48,0,227:17:15:0/1:51 +chr10 69773841 . G A 8.76 . DP=24;AF1=0.5163;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,0.27,0.33,1 PL:DP:SP:GT:GQ 38,0,12:4:0:0/1:15 +chr10 69778327 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69808543 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69831080 . A G 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 69837577 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 69855133 . AT ATAGCGGGGCCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69863007 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69881212 . T C 47 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=3,3,7,0;MQ=48;PV4=0.07,0.11,0.0045,1 PL:DP:SP:GT:GQ 77,0,123:13:12:0/1:80 +chr10 69881217 . G A 3.01 . DP=26;AF1=0.4997;CI95=0.5,0.5;DP4=4,1,2,0;MQ=48;PV4=1,0.47,1.5e-05,1 PL:DP:SP:GT:GQ 30,0,95:7:0:0/1:33 +chr10 69910184 . CT CTCCAGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69926660 . g gAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69934467 . A G 32.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 65,21,0:7:0:1/1:84 +chr10 69935235 . T C 39.5 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=47 PL:DP:SP:GT:GQ 72,12,0:4:0:1/1:72 +chr10 69948844 . T C 15.6 . DP=44;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 48,12,0:4:0:1/1:72 +chr10 69955148 . TA TACTGTGGCA 7.46 . INDEL;DP=4;AF1=0.5163;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 69969986 . C T 99 . DP=28;AF1=1;CI95=1,1;DP4=1,0,19,0;MQ=47;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 155,43,0:20:0:1/1:99 +chr10 70028791 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70035805 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70045069 . GCA GCATCA 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 70045197 . TCCCC TCCC 7.15 . INDEL;DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 70051928 . A G 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=13,9,5,8;MQ=48;PV4=0.31,0.013,5.8e-34,1 PL:DP:SP:GT:GQ 251,0,255:35:5:0/1:99 +chr10 70056620 . aa aAGAATGTGTa 12.7 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70075667 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 70093223 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70108057 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70108061 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70123804 . T C 25 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=6,2,7,0;MQ=49;PV4=0.47,0.14,1,1 PL:DP:SP:GT:GQ 55,0,121:15:3:0/1:58 +chr10 70143774 . C T 46 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,3;MQ=47;PV4=1,0.002,0.064,1 PL:DP:SP:GT:GQ 76,0,82:6:0:0/1:78 +chr10 70157322 . a aCAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 70252483 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 70259121 . CTTTTTTT CTTT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 70266400 . A G,C 6.79 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 46,15,36,9,0,36:3:0:1/1:49 +chr10 70304269 . G A 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 70332320 . A G 12.3 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,4;MQ=47;PV4=0.048,0.056,1,1 PL:DP:SP:GT:GQ 42,0,134:10:13:0/1:45 +chr10 70332672 . T A 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=0,6,2,16;MQ=45;PV4=1,1,1.2e-10,1 PL:DP:SP:GT:GQ 255,0,111:24:0:0/1:99 +chr10 70332862 . C T 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=9,7,9,4;MQ=47;PV4=0.7,2.6e-06,1.5e-23,0.18 PL:DP:SP:GT:GQ 255,0,255:29:2:0/1:99 +chr10 70390096 . tgt tGTACAAAgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70392137 . A G 34 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,1,0.00041,1 PL:DP:SP:GT:GQ 64,0,67:7:0:0/1:65 +chr10 70392361 . G GGTTCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70394184 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 70404212 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 70405855 . A G 99 . DP=13;AF1=1;CI95=0.5,1;DP4=0,1,7,4;MQ=48;PV4=0.42,0.25,0.19,1 PL:DP:SP:GT:GQ 160,7,0:12:0:1/1:57 +chr10 70406072 . C G 5.46 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,0,3;MQ=48;PV4=1,0.22,0.029,1 PL:DP:SP:GT:GQ 34,0,100:8:0:0/1:37 +chr10 70435652 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 70459361 . TC TCTCC 12.7 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70459362 . CATCAA CTGGATCAA 12.7 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70471271 . c cTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70485134 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 70502288 . G A 99 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=15,24,17,15;MQ=48;PV4=0.24,4.1e-24,1.9e-13,0.2 PL:DP:SP:GT:GQ 235,0,255:71:6:0/1:99 +chr10 70513318 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 70515287 . C G 3.01 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=2,3,1,3;MQ=48;PV4=1,0.23,0.19,1 PL:DP:SP:GT:GQ 30,0,103:9:0:0/1:33 +chr10 70515291 . A T 3.34 . DP=20;AF1=0.5937;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.33,0.12 PL:DP:SP:GT:GQ 30,0,5:3:0:0/1:7 +chr10 70525591 . G A 4.84 . DP=6;AF1=0.5127;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.18,0.33,0.31 PL:DP:SP:GT:GQ 33,0,13:4:0:0/1:16 +chr10 70526280 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70532329 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 70546394 . A G 21 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,3,4,0;MQ=49;PV4=0.029,0.016,0.014,1 PL:DP:SP:GT:GQ 51,0,64:7:15:0/1:54 +chr10 70547700 . ATAA ATAAGTAA 7.35 . INDEL;DP=13;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,32:2:0:0/1:35 +chr10 70601417 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 70615452 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70641614 . C CGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70641860 . T C 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,1,10;MQ=48 PL:DP:SP:GT:GQ 133,33,0:11:0:1/1:99 +chr10 70641952 . T C 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,34:2:0:0/1:32 +chr10 70646193 . C T 3.54 . DP=40;AF1=0.4998;CI95=0.5,0.5;DP4=3,15,5,0;MQ=49;PV4=0.0017,0.06,1.5e-05,0.36 PL:DP:SP:GT:GQ 31,0,249:23:28:0/1:34 +chr10 70654222 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 70660695 . G GACT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 70677662 . C CAA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 70694171 . T A 11.3 . DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=0,3,0,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,29:8:0:0/1:32 +chr10 70702908 . A T 4.13 . DP=8;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,1,0.11,0.053 PL:DP:SP:GT:GQ 32,0,30:4:0:0/1:31 +chr10 70725128 . A G 99 . DP=15;AF1=1;CI95=1,1;DP4=0,1,9,3;MQ=45;PV4=0.31,1,0.039,1 PL:DP:SP:GT:GQ 236,22,0:13:0:1/1:88 +chr10 70735339 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 70742348 . AA AAGA 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 38,0,80:4:0:0/1:41 +chr10 70748716 . TGG TGCCAGG 7.41 . INDEL;DP=13;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,15:2:0:0/1:18 +chr10 70754598 . TC TCGAACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70783075 . T C 27 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 +chr10 70791162 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 70861890 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 70866554 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 70886697 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 70917355 . c cTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70928380 . A C 19.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=8,2,0,6;MQ=49;PV4=0.007,0.0015,0.00032,1 PL:DP:SP:GT:GQ 49,0,226:16:22:0/1:52 +chr10 70935110 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 70939153 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 70944600 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70949240 . TTG TTGTATG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.19 PL:DP:SP:GT:GQ 38,0,71:4:0:0/1:41 +chr10 70953065 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70962142 . CC CCCGC 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 70962148 . TG TGTCTGTACAG 7.46 . INDEL;DP=9;AF1=0.5163;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 70992635 . G A 27 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=13,13,7,4;MQ=50;PV4=0.5,7.4e-15,1,1 PL:DP:SP:GT:GQ 57,0,255:37:3:0/1:60 +chr10 70992664 . C T 78 . DP=28;AF1=1;CI95=1,1;DP4=1,0,0,23;MQ=49;PV4=0.042,1,0.31,1 PL:DP:SP:GT:GQ 111,56,0:24:0:1/1:99 +chr10 70992716 . G A 66 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=2,9,0,13;MQ=49;PV4=0.2,2.3e-05,0.062,1 PL:DP:SP:GT:GQ 96,0,230:24:7:0/1:99 +chr10 70992912 . A T 99 . DP=55;AF1=1;CI95=1,1;DP4=3,0,13,30;MQ=48;PV4=0.037,1,0.037,1 PL:DP:SP:GT:GQ 239,70,0:46:14:1/1:99 +chr10 70992949 . T A 42 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,13;MQ=48;PV4=1,0.00021,1,1 PL:DP:SP:GT:GQ 72,0,55:16:0:0/1:58 +chr10 71007107 . C A 28 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=12,0,7,0;MQ=49;PV4=1,0.047,0.0056,1 PL:DP:SP:GT:GQ 58,0,137:19:0:0/1:61 +chr10 71010026 . T C 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 71011846 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 71016947 . C G 20.6 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 53,12,0:4:0:1/1:72 +chr10 71018660 . T C 19.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,4;MQ=47;PV4=0.14,1,0.028,1 PL:DP:SP:GT:GQ 49,0,50:7:8:0/1:49 +chr10 71026510 . C A 36.5 . DP=54;AF1=0.9998;CI95=0.5,1;DP4=0,1,5,1;MQ=50;PV4=0.29,0.44,0.3,1 PL:DP:SP:GT:GQ 66,2,0:7:0:1/1:37 +chr10 71028763 . AGCGTCACC A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 71055496 . G A 50 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=49;PV4=1,0.00019,0.067,1 PL:DP:SP:GT:GQ 80,0,121:10:0:0/1:83 +chr10 71060610 . A G 87.2 . DP=13;AF1=1;CI95=0.5,1;DP4=0,1,0,12;MQ=48;PV4=1,0.25,0.2,1 PL:DP:SP:GT:GQ 119,8,0:13:0:1/1:56 +chr10 71093058 . A ACT 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 71100938 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 71113854 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 71120421 . CC CCCTGTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71144130 . T G 9.52 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=21,4,0,8;MQ=49;PV4=3.6e-05,0.013,9.8e-08,1 PL:DP:SP:GT:GQ 39,0,255:33:44:0/1:42 +chr10 71144702 . G A 62 . DP=30;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=49 PL:DP:SP:GT:GQ 95,33,0:11:0:1/1:99 +chr10 71170707 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 71174655 . tcacacacacacac tcacacacacac 4.11 . INDEL;DP=3;AF1=0.5718;CI95=0.5,1;DP4=1,0,1,0;MQ=36;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,6:2:0:0/1:8 +chr10 71175644 . ct cTGt 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,51:3:0:0/1:44 +chr10 71175645 . T A 23.3 . DP=6;AF1=0.5336;CI95=0.5,1;DP4=1,0,3,0;MQ=48;PV4=1,1,0.065,0.39 PL:DP:SP:GT:GQ 53,0,9:4:0:0/1:12 +chr10 71223229 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 71224168 . G GCCAGGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71241910 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 71245297 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 71277313 . TG TGTGCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71326723 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 71333046 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 71392557 . C T 55.1 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 88,21,0:7:0:1/1:84 +chr10 71437565 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 71439390 . C CATCTACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71467691 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 71499514 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71503988 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 71508036 . ta tAACGACCCa 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 71509209 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 71512287 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71535239 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 71553737 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 71556945 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 71583923 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71635215 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 71653389 . T TTTGGGAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71661072 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 71663357 . T TCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71665792 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71665820 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71720872 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 71730541 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 71736762 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71770443 . A T 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 71830728 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71851127 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71859747 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 71862745 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71868763 . G A 76 . DP=9;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=49 PL:DP:SP:GT:GQ 109,24,0:8:0:1/1:96 +chr10 71868822 . A C 29 . DP=23;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,4,0;MQ=49;PV4=0.33,0.49,0.16,1 PL:DP:SP:GT:GQ 59,0,30:6:0:0/1:33 +chr10 71876382 . C T 69.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 102,18,0:6:0:1/1:90 +chr10 71880755 . TAA TA 14.4 . INDEL;DP=24;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr10 71880757 . A C 4.11 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 34,9,0:3:0:1/1:63 +chr10 71885543 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 71885928 . T TCAGGATGCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71905167 . G A 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 71915062 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71915152 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71921591 . G A 99 . DP=27;AF1=1;CI95=1,1;DP4=0,1,12,10;MQ=49;PV4=0.48,1,1,0.083 PL:DP:SP:GT:GQ 190,53,0:23:0:1/1:99 +chr10 71923472 . T C 28.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr10 71923763 . G A 4.13 . DP=2;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,26:2:0:0/1:28 +chr10 71942617 . AGA AGACACGCGGA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 71955095 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 71968946 . A T 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,0.17,0.0015,0.069 PL:DP:SP:GT:GQ 41,0,95:8:0:0/1:44 +chr10 71969062 . G A 13.9 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 71971484 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 71988215 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71996558 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 72079307 . tcc tCCTCTCcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72083609 . G T 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=5,0,1,2;MQ=49;PV4=0.11,0.041,0.26,0.35 PL:DP:SP:GT:GQ 36,0,131:8:10:0/1:39 +chr10 72115554 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 72119639 . G GTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72124336 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 72135000 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72140057 . C CGA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 72141001 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 72144225 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72149318 . T G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72179689 . C G 6.2 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,3,0;MQ=47;PV4=0.4,0.17,0.077,1 PL:DP:SP:GT:GQ 35,0,58:5:0:0/1:38 +chr10 72184402 . T C 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.36,0.21,1 PL:DP:SP:GT:GQ 34,0,44:4:0:0/1:37 +chr10 72184480 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72192303 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72195439 . T C 69.1 . DP=11;AF1=1;CI95=0.5,1;DP4=1,0,9,1;MQ=49;PV4=1,0.18,0.34,1 PL:DP:SP:GT:GQ 100,5,0:11:0:1/1:46 +chr10 72237179 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 72243570 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72243572 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72257113 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 72258316 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72264905 . t tCTGCATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72291304 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 72297567 . G A 30 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=47;PV4=1,0.011,0.17,1 PL:DP:SP:GT:GQ 60,0,63:6:0:0/1:61 +chr10 72298631 . T C 3.04 . DP=9;AF1=0.5048;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.045,0.33,1 PL:DP:SP:GT:GQ 30,0,17:4:0:0/1:20 +chr10 72298631 . T TC 19.3 . INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 +chr10 72307101 . C T 49.3 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=49 PL:DP:SP:GT:GQ 82,15,0:5:0:1/1:75 +chr10 72318807 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72324143 . A G 98 . DP=24;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=49 PL:DP:SP:GT:GQ 131,24,0:8:0:1/1:96 +chr10 72325243 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 72326469 . G A 7.89 . DP=3;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,13:2:0:0/1:16 +chr10 72338347 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72338356 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72349908 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 72350882 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72357713 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72358577 . G A 54.3 . DP=33;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=49 PL:DP:SP:GT:GQ 87,15,0:5:0:1/1:75 +chr10 72376370 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72380251 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 72422448 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72432905 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 72442179 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72460879 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72468594 . C T 4.26 . DP=5;AF1=0.5262;CI95=0.5,1;DP4=0,1,0,2;MQ=46;PV4=1,1,0.089,1 PL:DP:SP:GT:GQ 32,0,10:3:0:0/1:13 +chr10 72468601 . GG GGAG 12.5 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr10 72473263 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 72496375 . A G 99 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=43 PL:DP:SP:GT:GQ 167,18,0:6:0:1/1:90 +chr10 72500763 . T C 23.8 . DP=29;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,4;MQ=49;PV4=1,0.21,0.29,1 PL:DP:SP:GT:GQ 53,0,4:6:0:0/1:6 +chr10 72500863 . C G 29.6 . DP=33;AF1=0.5939;CI95=0.5,1;DP4=0,1,5,0;MQ=49;PV4=0.17,0.34,0.35,1 PL:DP:SP:GT:GQ 59,0,5:6:0:0/1:7 +chr10 72502783 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 72505097 . C CTA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.31 PL:DP:SP:GT:GQ 38,0,109:4:0:0/1:41 +chr10 72511223 . TCTCC TCTCCTCC 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,1;MQ=50;PV4=0.33,1,1,0.2 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 72512068 . T A 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 72512168 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72516986 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72517830 . G A 13.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,4,1,2;MQ=49;PV4=1,0.01,0.044,0.12 PL:DP:SP:GT:GQ 43,0,167:8:0:0/1:46 +chr10 72519067 . G A 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 72520330 . A G 7.8 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=8,5,4,1;MQ=50;PV4=0.61,0.0031,0.022,1 PL:DP:SP:GT:GQ 37,0,253:18:2:0/1:40 +chr10 72520660 . T C 42 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,9;MQ=49;PV4=1,5.5e-05,0.23,1 PL:DP:SP:GT:GQ 72,0,84:12:0:0/1:75 +chr10 72536922 . TCCT TCCTTAGAGACCT 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,45:4:0:0/1:40 +chr10 72540555 . tt tTTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72544968 . ACTTC ACTTCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72563875 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72576574 . A G 12.3 . DP=10;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.01,0.092,0.029 PL:DP:SP:GT:GQ 42,0,30:4:0:0/1:33 +chr10 72608849 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72619205 . C T 99 . DP=45;AF1=1;CI95=0.5,1;DP4=1,1,6,9;MQ=49;PV4=1,0.37,0.14,1 PL:DP:SP:GT:GQ 147,7,0:17:0:1/1:57 +chr10 72633458 . C T 49 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,10;MQ=49;PV4=1,1.5e-08,0.39,1 PL:DP:SP:GT:GQ 79,0,89:13:0:0/1:82 +chr10 72635335 . T C 3.01 . DP=44;AF1=0.4997;CI95=0.5,0.5;DP4=9,10,0,6;MQ=49;PV4=0.057,0.014,0.074,1 PL:DP:SP:GT:GQ 30,0,255:25:12:0/1:33 +chr10 72638054 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 72646409 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 72655715 . GA GAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72663731 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 72676367 . g gCACCCAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72677631 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 72694842 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72702134 . TGG T 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 72734308 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72738289 . T TCAATAGTGGCTCCC 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 72747467 . c cCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 72759115 . C G 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 72797736 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72816063 . G C 4.78 . DP=2;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,20:2:0:0/1:23 +chr10 72843258 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 72846130 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72850977 . ac aCATc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72855077 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72864036 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 72885660 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72906936 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72916818 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 72950686 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72961410 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72976875 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72998844 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 73023383 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 73028960 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 73036193 . G GACGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73056288 . GG GGTG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,68:4:0:0/1:41 +chr10 73056289 . G A 11.3 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,3,0;MQ=48;PV4=1,0.14,1,0.052 PL:DP:SP:GT:GQ 41,0,73:6:0:0/1:44 +chr10 73060184 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73091885 . t tGGGGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73104056 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,1,21;MQ=47 PL:DP:SP:GT:GQ 166,66,0:22:0:1/1:99 +chr10 73111258 . G T 26.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 +chr10 73111408 . C T 86 . DP=44;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,5,5;MQ=49;PV4=0.47,0.0091,0.38,1 PL:DP:SP:GT:GQ 116,0,31:12:3:0/1:34 +chr10 73119313 . ACCC ACCCTTTTCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73121913 . A G 99 . DP=37;AF1=1;CI95=1,1;DP4=1,0,16,16;MQ=42;PV4=1,1,0.055,1 PL:DP:SP:GT:GQ 255,79,0:33:0:1/1:99 +chr10 73121945 . T C 99 . DP=36;AF1=1;CI95=1,1;DP4=0,0,8,10;MQ=45 PL:DP:SP:GT:GQ 217,54,0:18:0:1/1:99 +chr10 73126978 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 73132073 . c cTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 73173698 . t tCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73188220 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73197656 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 73222734 . a aGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73238547 . G A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 73240337 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 73257658 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73265008 . gaga gAGAaga 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 73269314 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73275956 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73320123 . G GA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73369784 . C T 7.09 . DP=4;AF1=0.5162;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,12:2:0:0/1:15 +chr10 73382844 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 73383757 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 73398982 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 73436040 . G GGTTGCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73446700 . A ACCCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73447589 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73448723 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 73483308 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73484902 . A T 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73487415 . cacataca caca 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 73491026 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 73510924 . CCAAG C 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,0.024,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 73515764 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 73520632 . A C 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=48 PL:DP:SP:GT:GQ 132,27,0:9:0:1/1:99 +chr10 73525405 . G GCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73533616 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 73572561 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 73576226 . C CACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73578503 . G A 6.02 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 73578882 . T C 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,1,34;MQ=48 PL:DP:SP:GT:GQ 175,105,0:35:0:1/1:99 +chr10 73579405 . C T 64 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,7;MQ=47;PV4=1,4.2e-05,1.9e-06,1 PL:DP:SP:GT:GQ 94,0,235:23:0:0/1:97 +chr10 73579501 . AGAGG AG 10.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 73579979 . G A 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=16,0,16,0;MQ=47;PV4=1,1.3e-05,1.4e-12,0.049 PL:DP:SP:GT:GQ 190,0,233:32:0:0/1:99 +chr10 73623276 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 73625515 . C CAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73657201 . C CAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73665019 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73700635 . g gAAAATTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73711243 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73721132 . C A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 73722685 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 73775393 . T TGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73806360 . C G 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73820817 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 73834604 . at aTAGCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73852554 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 73885468 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73892709 . A G 3.06 . DP=8;AF1=0.5099;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.33,0.33,1 PL:DP:SP:GT:GQ 30,0,14:3:0:0/1:17 +chr10 73895174 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 73895178 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 73898652 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 73933787 . tg tGGCGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73935011 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73956869 . C CTCT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.31 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 73979170 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73992783 . A G 3.54 . DP=30;AF1=0.4998;CI95=0.5,0.5;DP4=3,5,6,0;MQ=49;PV4=0.031,0.004,0.0045,0.49 PL:DP:SP:GT:GQ 31,0,201:14:15:0/1:34 +chr10 74023805 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74035041 . T A 93 . DP=19;AF1=1;CI95=1,1;DP4=0,1,0,16;MQ=48;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 126,27,0:17:0:1/1:99 +chr10 74052490 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74073683 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74100693 . C CGTTGGAAA 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 41,0,80:3:0:0/1:44 +chr10 74116582 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74174641 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 74185488 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74185493 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74193088 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74222408 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 74226624 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 74262936 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74262951 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74285446 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 74323575 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74381365 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 74383021 . ctctgtcaa c 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74483371 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 74507559 . ct cTATTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74515624 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74515651 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74582856 . a aCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74596052 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74628428 . T TTTTCCCCAG 7.57 . INDEL;DP=4;AF1=0.5336;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,9:2:0:0/1:12 +chr10 74669962 . a aCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74671611 . C T 99 . DP=61;AF1=1;CI95=1,1;DP4=0,1,16,35;MQ=44;PV4=1,1,2.3e-05,1 PL:DP:SP:GT:GQ 255,138,0:52:0:1/1:99 +chr10 74673910 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 74695287 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 74735286 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 74745816 . c cGCCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74761878 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74813116 . A G 29 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,7,5,1;MQ=47;PV4=0.041,0.19,0.044,1 PL:DP:SP:GT:GQ 59,0,157:15:14:0/1:62 +chr10 74813127 . T C 30 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=4,2,1,5;MQ=48;PV4=0.24,0.055,0.036,1 PL:DP:SP:GT:GQ 60,0,130:12:6:0/1:63 +chr10 74827251 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 74834281 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74834651 . T C 60.3 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 93,15,0:5:0:1/1:75 +chr10 74857712 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 74859512 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74874262 . T C 46 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=50 PL:DP:SP:GT:GQ 79,24,0:8:0:1/1:96 +chr10 74879505 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74886384 . CCCT CCCTCTCCT 12.7 . INDEL;DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74886392 . GCC GC 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=50 PL:DP:SP:GT:GQ 157,36,0:12:0:1/1:99 +chr10 74886598 . C G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,1,15;MQ=45 PL:DP:SP:GT:GQ 213,48,0:16:0:1/1:99 +chr10 74892434 . TA TACTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74894375 . T C 23 . DP=27;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,7,0;MQ=48;PV4=0.22,0.047,0.23,1 PL:DP:SP:GT:GQ 53,0,30:9:0:0/1:33 +chr10 74896664 . T C 45.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 78,15,0:5:0:1/1:75 +chr10 74899134 . C G 99 . DP=42;AF1=1;CI95=1,1;DP4=0,0,12,23;MQ=45 PL:DP:SP:GT:GQ 255,105,0:35:0:1/1:99 +chr10 74914256 . T G 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=47 PL:DP:SP:GT:GQ 133,27,0:9:0:1/1:99 +chr10 74916002 . T G 37.1 . DP=26;AF1=1;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 68,5,0:6:0:1/1:46 +chr10 74916173 . T A 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,6,5;MQ=46 PL:DP:SP:GT:GQ 194,33,0:11:0:1/1:99 +chr10 74920436 . C T 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 74923562 . C T 99 . DP=60;AF1=0.7303;CI95=0.5,1;DP4=0,1,9,6;MQ=48;PV4=0.44,7.9e-06,0.26,0.4 PL:DP:SP:GT:GQ 137,0,2:16:0:0/1:3 +chr10 74928151 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74940456 . T TAGCAGCGGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74976149 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74999252 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75003600 . C G 9.52 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=3,1,4,0;MQ=48;PV4=1,0.2,0.11,0.27 PL:DP:SP:GT:GQ 39,0,88:8:0:0/1:42 +chr10 75013805 . CAATT C,CATT 9.94 . INDEL;DP=18;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 67,23,47,20,0,44:2:0:1/1:41 +chr10 75013807 . ATTT ATT 3.66 . INDEL;DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 75013883 . CCTCT CCT 99 . INDEL;DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 144,21,0:7:0:1/1:84 +chr10 75032032 . gc gCCTAGTCGTAAc 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 75053202 . GTTT GTT 99 . INDEL;DP=21;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=50 PL:DP:SP:GT:GQ 157,54,0:18:0:1/1:99 +chr10 75054433 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 75055736 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75056737 . T C 49.1 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 82,18,0:6:0:1/1:90 +chr10 75056863 . A C 66.1 . DP=60;AF1=1;CI95=0.5,1;DP4=1,0,5,2;MQ=49;PV4=1,1,0.24,1 PL:DP:SP:GT:GQ 97,5,0:8:0:1/1:46 +chr10 75058601 . G C 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=45 PL:DP:SP:GT:GQ 161,33,0:11:0:1/1:99 +chr10 75059331 . A T 12 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 75069872 . T C 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,29,0;MQ=49 PL:DP:SP:GT:GQ 136,87,0:29:0:1/1:99 +chr10 75071272 . g gGGAGAACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75072199 . G C 99 . DP=31;AF1=1;CI95=1,1;DP4=0,1,20,2;MQ=49;PV4=0.13,0.3,0.28,1 PL:DP:SP:GT:GQ 143,45,0:23:0:1/1:99 +chr10 75072238 . C A 13.2 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=11,7,6,0;MQ=49;PV4=0.13,0.082,4.3e-06,0.36 PL:DP:SP:GT:GQ 43,0,255:24:9:0/1:46 +chr10 75090600 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 75095253 . G A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,4,15;MQ=47;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 243,40,0:20:0:1/1:99 +chr10 75108146 . T G 5.46 . DP=9;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.019,1 PL:DP:SP:GT:GQ 34,0,26:4:0:0/1:28 +chr10 75143458 . C T 14.9 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr10 75147544 . GGAAGAA GGAAGAAGAA 99 . INDEL;DP=47;AF1=1;CI95=1,1;DP4=0,2,1,32;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 255,75,0:35:0:1/1:99 +chr10 75147579 . C T 65 . DP=27;AF1=1;CI95=1,1;DP4=0,0,0,24;MQ=50 PL:DP:SP:GT:GQ 98,72,0:24:0:1/1:99 +chr10 75148116 . A G 99 . DP=26;AF1=1;CI95=0.5,1;DP4=1,1,11,7;MQ=47;PV4=1,1,0.0033,1 PL:DP:SP:GT:GQ 203,15,0:20:0:1/1:75 +chr10 75156152 . T C 13.2 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 75160439 . C T 15.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 75160478 . A T 18.8 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr10 75186107 . C T 18.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,4;MQ=48;PV4=0.076,0.3,0.12,1 PL:DP:SP:GT:GQ 48,0,99:10:11:0/1:51 +chr10 75186609 . TGA TGACAGA 7.35 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 75186973 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75187502 . G A 33 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,6,4,1;MQ=48;PV4=0.072,0.031,0.025,1 PL:DP:SP:GT:GQ 63,0,156:12:11:0/1:66 +chr10 75187516 . C G 7.8 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=8,2,0,4;MQ=48;PV4=0.015,0.037,0.056,1 PL:DP:SP:GT:GQ 37,0,212:14:18:0/1:40 +chr10 75208216 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75211077 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 75220107 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 75227278 . aa aATGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75264495 . G GAC 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.042 PL:DP:SP:GT:GQ 41,0,80:3:0:0/1:44 +chr10 75285741 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75286691 . C A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75289359 . C A 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 75294524 . C T 6.98 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=5,5,0,5;MQ=49;PV4=0.1,0.054,0.0086,1 PL:DP:SP:GT:GQ 36,0,214:15:10:0/1:39 +chr10 75294528 . C T 55 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=5,3,0,10;MQ=48;PV4=0.0065,0.021,0.017,1 PL:DP:SP:GT:GQ 85,0,170:18:22:0/1:88 +chr10 75296186 . T G 6.2 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=5,7,0,5;MQ=49;PV4=0.24,0.022,1,0.49 PL:DP:SP:GT:GQ 35,0,226:17:6:0/1:38 +chr10 75301505 . T G 15.1 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,15,0,6;MQ=49;PV4=1,0.02,2e-06,1 PL:DP:SP:GT:GQ 45,0,190:21:0:0/1:48 +chr10 75302752 . A C 22 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,3,5,0;MQ=49;PV4=0.18,0.096,0.06,1 PL:DP:SP:GT:GQ 52,0,134:11:7:0/1:55 +chr10 75302801 . T A 13.2 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=13,1,0,6;MQ=48;PV4=0.00018,0.055,0.17,0.18 PL:DP:SP:GT:GQ 43,0,182:20:37:0/1:46 +chr10 75312755 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75322851 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75335857 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75345230 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75406021 . GT GTTT 6.68 . INDEL;DP=2;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,11:2:0:0/1:14 +chr10 75411282 . C G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 75427486 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75476882 . A G 3.55 . DP=11;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 31,0,25:4:0:0/1:27 +chr10 75479869 . T G,C 5.29 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 48,19,34,13,0,34:3:0:1/1:49 +chr10 75487099 . T C 7.8 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 75491908 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 75506674 . T C 99 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=11,13,4,17;MQ=48;PV4=0.068,2.2e-10,2.8e-12,1 PL:DP:SP:GT:GQ 224,0,255:45:12:0/1:99 +chr10 75526651 . T C 37 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,6;MQ=48;PV4=0.4,0.17,0.46,0.43 PL:DP:SP:GT:GQ 67,0,76:10:0:0/1:69 +chr10 75527537 . A C 9.31 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 75527708 . A G 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=9,7,4,22;MQ=49;PV4=0.014,2.5e-05,0.0069,0.47 PL:DP:SP:GT:GQ 161,0,255:42:19:0/1:99 +chr10 75554158 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75555276 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 75564883 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 75567844 . T G 4.77 . DP=41;AF1=0.4999;CI95=0.5,0.5;DP4=8,7,0,6;MQ=49;PV4=0.046,0.0068,0.21,1 PL:DP:SP:GT:GQ 33,0,255:21:13:0/1:36 +chr10 75568649 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 75574848 . G C 12.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,3,4,0;MQ=50;PV4=0.2,0.14,0.056,1 PL:DP:SP:GT:GQ 42,0,130:10:7:0/1:45 +chr10 75578020 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 75599882 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 75602188 . A T 6.98 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.35,0.028,1 PL:DP:SP:GT:GQ 36,0,101:10:0:0/1:39 +chr10 75605400 . ttc tTCCTTAtc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75607168 . T C 4.77 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=0,11,0,4;MQ=49;PV4=1,0.0021,0.002,1 PL:DP:SP:GT:GQ 33,0,209:15:0:0/1:36 +chr10 75607643 . C CT 59.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 99,9,0:3:0:1/1:63 +chr10 75607696 . CAA CA 99 . INDEL;DP=15;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=50 PL:DP:SP:GT:GQ 154,42,0:14:0:1/1:99 +chr10 75608300 . C T 9.52 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,4,4,0;MQ=49;PV4=0.19,0.049,0.021,1 PL:DP:SP:GT:GQ 39,0,190:11:7:0/1:42 +chr10 75630262 . AGG AGGGG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 75643453 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75655368 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 75663816 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75672961 . G A 5.31 . DP=13;AF1=0.6242;CI95=0.5,1;DP4=1,0,0,4;MQ=50;PV4=0.2,0.1,1,1 PL:DP:SP:GT:GQ 33,0,4:5:0:0/1:6 +chr10 75673101 . T C 72.1 . DP=39;AF1=0.9966;CI95=0.5,1;DP4=0,1,6,2;MQ=49;PV4=0.33,0.23,0.26,1 PL:DP:SP:GT:GQ 101,1,0:9:0:1/1:23 +chr10 75673879 . C T 99 . DP=42;AF1=1;CI95=1,1;DP4=0,1,12,23;MQ=44;PV4=1,1,0.0073,1 PL:DP:SP:GT:GQ 255,82,0:36:0:1/1:99 +chr10 75674381 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75682466 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 75731664 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75746575 . gc gCTCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75772415 . A AATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75788551 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75795805 . g gTTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75807161 . AA AACTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75830739 . A G 26 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=5,2,5,0;MQ=49;PV4=0.47,0.16,0.0048,0.44 PL:DP:SP:GT:GQ 56,0,144:12:3:0/1:59 +chr10 75831517 . AA AACAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75842152 . G A 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=47 PL:DP:SP:GT:GQ 132,30,0:10:0:1/1:99 +chr10 75843100 . T A 67.1 . DP=19;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 100,21,0:7:0:1/1:84 +chr10 75854057 . G C 4.13 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.12,1,0.035 PL:DP:SP:GT:GQ 32,0,38:6:0:0/1:34 +chr10 75859813 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 75863750 . C T 61 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,7;MQ=48;PV4=1,0.00017,0.015,0.46 PL:DP:SP:GT:GQ 91,0,143:12:0:0/1:94 +chr10 75876591 . A ATGGCGAGGAGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 75877926 . A G 3.54 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,0,2;MQ=49;PV4=0.4,0.14,0,0.38 PL:DP:SP:GT:GQ 31,0,99:5:4:0/1:34 +chr10 75888907 . A C 10.4 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=10,0,0,5;MQ=49;PV4=0.00033,0.0088,0.0011,0.02 PL:DP:SP:GT:GQ 40,0,159:15:35:0/1:43 +chr10 75893733 . C A 5.46 . DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,0.19,0.32,1 PL:DP:SP:GT:GQ 34,0,27:3:0:0/1:29 +chr10 75898015 . A G 6.2 . DP=27;AF1=0.4999;CI95=0.5,0.5;DP4=9,1,0,4;MQ=49;PV4=0.005,1.8e-05,0.00035,1 PL:DP:SP:GT:GQ 35,0,250:14:23:0/1:38 +chr10 75931540 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 75974039 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75974545 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 76004751 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 76018185 . A ACTCTCTGT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 76062343 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76111330 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76117086 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 76128388 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76131890 . G C 15.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,0;MQ=48;PV4=1,0.24,0.16,1 PL:DP:SP:GT:GQ 45,0,68:4:0:0/1:48 +chr10 76154971 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 76158177 . C T 21.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 54,15,0:5:0:1/1:75 +chr10 76238343 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 76257614 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76299939 . A ACTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76306233 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76318422 . t tACTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76336344 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76345340 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 76345781 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76353358 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76382860 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76415666 . G T 6.02 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 76419641 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76435908 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76456897 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76456916 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76468002 . T C,G 24 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 63,16,53,7,0,53:4:0:1/1:63 +chr10 76484050 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76484076 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76504082 . C T 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 76509687 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 76522502 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 76527172 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76535412 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76543877 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76549039 . ac aCGACACc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76561552 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76576692 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76600826 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76606015 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 76617929 . G GACCAAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76620195 . tc tCCGCTCACCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76627669 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76672061 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 76689310 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 76729901 . T A 7 . DP=7;AF1=0.5031;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.077,0.11,0.27 PL:DP:SP:GT:GQ 36,0,19:3:0:0/1:22 +chr10 76732425 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76748099 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 76768205 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 76772344 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76774968 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76790922 . G GCA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,73:3:0:0/1:44 +chr10 76796236 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76798480 . g gCAGA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76827555 . T G 4.63 . DP=2;AF1=0.6241;CI95=0.5,1;DP4=0,1,0,1;MQ=30;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,4:2:0:0/1:6 +chr10 76833280 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76841147 . a aCAT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 76841297 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 76849523 . TGC TGCGC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr10 76854564 . C T 99 . DP=26;AF1=1;CI95=1,1;DP4=0,1,13,6;MQ=48;PV4=0.35,0.19,0.27,1 PL:DP:SP:GT:GQ 205,29,0:20:0:1/1:99 +chr10 76855326 . A G 9.31 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 76855412 . G A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,9,29;MQ=44;PV4=0.26,1,9.9e-05,1 PL:DP:SP:GT:GQ 255,91,0:39:0:1/1:99 +chr10 76855597 . T TTC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.29 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 76856668 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76857274 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76857716 . A G 96 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=47 PL:DP:SP:GT:GQ 129,27,0:9:0:1/1:99 +chr10 76861680 . T C 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,4,12;MQ=48 PL:DP:SP:GT:GQ 190,48,0:16:0:1/1:99 +chr10 76955593 . CCT CCTCTTATTCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76973735 . T C 15.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=17,0,7,0;MQ=49;PV4=1,0.005,0.00014,1 PL:DP:SP:GT:GQ 45,0,200:24:0:0/1:48 +chr10 76978605 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 76980515 . A C 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,0.21,0.15,1 PL:DP:SP:GT:GQ 31,0,78:5:0:0/1:34 +chr10 76989595 . t tCTAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 77007917 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77007925 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77008914 . A T 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,39:2:0:0/1:32 +chr10 77029284 . A G 6.02 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 77062276 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77085720 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77102200 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77105075 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77124587 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 77129056 . t tTCTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 77200854 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77266452 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 77314801 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 77317399 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77317403 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77366393 . G A 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=42;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,34:2:0:0/1:33 +chr10 77397100 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77414622 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77429416 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77454739 . A G 51.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=49 PL:DP:SP:GT:GQ 84,15,0:5:0:1/1:75 +chr10 77489335 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77525603 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 77542236 . TT TTGCACT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr10 77542841 . A C 7.8 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.29,1,1 PL:DP:SP:GT:GQ 37,0,46:6:0:0/1:39 +chr10 77572780 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77574901 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 77612455 . TG TGACTTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 77622214 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77650478 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 77673701 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 77675976 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 77689961 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77700318 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 77706499 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 77717599 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77745587 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77778953 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 77783745 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 77818623 . C G 3.01 . DP=3;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,1,0;MQ=45;PV4=0.33,0.085,0.3,1 PL:DP:SP:GT:GQ 30,0,77:3:0:0/1:33 +chr10 77825988 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 77839095 . TGGGTG T 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 77843207 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 77851160 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 77863902 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 77865813 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 77932593 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77935713 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77935737 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77948101 . A C 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 77967010 . ag aGCACACACACg 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 77970889 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77988880 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 77998848 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78006088 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 78009299 . A ACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 78028067 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78036652 . g gCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 78102854 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 78104011 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78104020 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78143749 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78166705 . TTC TTCGGTTGCATC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 78212133 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 78239707 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 78251286 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 78269867 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78290389 . ga gATTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 78301846 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 78405608 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78438548 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 78456769 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78481784 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78490476 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 78506877 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78522185 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78529107 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 78546368 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 78565971 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 78649399 . C T 99 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,14;MQ=47;PV4=1,0.044,9.2e-09,1 PL:DP:SP:GT:GQ 181,0,227:28:0:0/1:99 +chr10 78674048 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78680536 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78728800 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78744081 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 78786836 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78791687 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78828962 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 78864421 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 78867125 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 78876625 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78935329 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78937224 . T G 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 78974219 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 78983060 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 79017032 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79046186 . c cCATAGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79046950 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 79055691 . TA TACTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79062235 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79082812 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79082937 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 79083639 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 79095602 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 79110268 . G GGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79123618 . A T 5.48 . DP=2;AF1=0.5039;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,18:2:0:0/1:21 +chr10 79139296 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 79147111 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79167935 . CCTG C 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 79172924 . A ACGCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79183415 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79191781 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79192646 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 79211614 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79220322 . at aTACACACTTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79245347 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79282938 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79301142 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79306171 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 79311094 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 79322744 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 79346994 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 79350789 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 79352577 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79352885 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 79353072 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79379065 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79399766 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79417319 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79429945 . A C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 79430731 . g gTTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79430802 . G T 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 79470931 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79471555 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79491688 . G A 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 79494604 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79516275 . tt tTGt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 79517450 . tagacta t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79533286 . tcacaa t 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 79541428 . C T 38.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 71,12,0:4:0:1/1:72 +chr10 79552151 . T C 65 . DP=14;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 98,27,0:9:0:1/1:99 +chr10 79553673 . T C 8.44 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 79556029 . G T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=43 PL:DP:SP:GT:GQ 246,39,0:13:0:1/1:99 +chr10 79565352 . G C 3.01 . DP=12;AF1=0.4997;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,0.097,1,1 PL:DP:SP:GT:GQ 30,0,76:8:0:0/1:33 +chr10 79567762 . C T 23.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 56,12,0:4:0:1/1:72 +chr10 79567774 . G C 85 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 118,33,0:11:0:1/1:99 +chr10 79570873 . G T 18.6 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 51,12,0:4:0:1/1:72 +chr10 79579047 . A G 8.61 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 40,9,0:3:0:1/1:63 +chr10 79579830 . G A 37 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=47 PL:DP:SP:GT:GQ 69,9,0:3:0:1/1:63 +chr10 79584178 . G C 99 . DP=32;AF1=1;CI95=1,1;DP4=0,0,2,7;MQ=48 PL:DP:SP:GT:GQ 133,27,0:9:0:1/1:99 +chr10 79590685 . C T 38.1 . DP=18;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,6;MQ=48;PV4=1,0.032,0.16,1 PL:DP:SP:GT:GQ 68,0,16:7:0:0/1:19 +chr10 79590726 . C G 36.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:DP:SP:GT:GQ 69,15,0:5:0:1/1:75 +chr10 79595798 . C T 30.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 62,6,0:2:0:1/1:49 +chr10 79609250 . T A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 79614189 . A G 22.3 . DP=29;AF1=0.5336;CI95=0.5,1;DP4=1,0,2,1;MQ=48;PV4=1,1,0.22,1 PL:DP:SP:GT:GQ 52,0,9:4:0:0/1:12 +chr10 79616642 . C T 37 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=4,0,0,6;MQ=49;PV4=0.0048,0.0084,0.068,0.076 PL:DP:SP:GT:GQ 67,0,102:10:23:0/1:70 +chr10 79620927 . t tTATAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79628875 . A G 7.59 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 79645129 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 79712467 . tcc tCCCcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79713699 . TG TGCG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.0031 PL:DP:SP:GT:GQ 38,0,84:4:0:0/1:41 +chr10 79744174 . A G 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 32,0,83:3:0:0/1:35 +chr10 79745789 . A G 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=16,11,8,8;MQ=49;PV4=0.75,4.7e-16,5.6e-12,1 PL:DP:SP:GT:GQ 169,0,255:43:1:0/1:99 +chr10 79750820 . A T 5.46 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=3,3,3,0;MQ=47;PV4=0.46,0.0042,1,1 PL:DP:SP:GT:GQ 34,0,145:9:3:0/1:37 +chr10 79760818 . A G 82 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=7,14,2,6;MQ=49;PV4=1,8e-05,3.1e-08,0.16 PL:DP:SP:GT:GQ 112,0,255:29:0:0/1:99 +chr10 79760969 . C CCT 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 79762028 . G A 83 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,3,2,4;MQ=47;PV4=1,0.0013,0.00076,1 PL:DP:SP:GT:GQ 113,0,136:10:0:0/1:99 +chr10 79769831 . T G 28 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 +chr10 79782276 . T C 29.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 62,12,0:4:0:1/1:72 +chr10 79806160 . ctgg c 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 79808238 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 79831332 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 79854447 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79896235 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79922607 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80063553 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 80079480 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80110859 . AG AGGAAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80117253 . T C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 80128555 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80142528 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80167052 . C G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80174563 . T TGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80177856 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80203161 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80220157 . T A,G 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=40 PL:DP:SP:GT:GQ 50,16,37,13,0,37:2:0:1/1:41 +chr10 80250656 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80261625 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80261686 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80264059 . C A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr10 80268803 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 80283733 . a aTTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80286793 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80291358 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80305379 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80314547 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 80323091 . G GGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80324540 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80327194 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80358739 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 80364929 . G A 4.84 . DP=2;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,13:2:0:0/1:16 +chr10 80375926 . g gGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80401014 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 80455836 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80460660 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 80463895 . c cAACGAAGTGAGTTACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80464476 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80516094 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80524033 . AC ACATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80524512 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80572639 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80575821 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80600974 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 80601630 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 80615127 . GTATT GT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 80623390 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80626115 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80664086 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80667327 . A AG 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 80668674 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 80668685 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80674802 . C G 4.78 . DP=2;AF1=0.5011;CI95=0.5,0.5;DP4=0,1,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,23:2:0:0/1:26 +chr10 80676015 . GG GGGTTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80684745 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80701555 . G GAACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80704263 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80709125 . CTGCATG CTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80715046 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 80728530 . GGT GGTGT 3.8 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,43:2:0:0/1:41 +chr10 80758155 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80765948 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 80785775 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80785780 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80795436 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80807447 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 80812807 . AC ACC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80814143 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80857719 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 80861810 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80865153 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 80866668 . A G 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 80871666 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80895606 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80902109 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80949346 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80978333 . att aTTTTTTAATtt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80987968 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 81010037 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81020795 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 81021236 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81023144 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 81036041 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81037229 . G A 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 81050114 . T TGC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 81052048 . A G 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,40:2:0:0/1:34 +chr10 81053475 . G A 54 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,8;MQ=49;PV4=1,4.3e-08,8.9e-06,0.15 PL:DP:SP:GT:GQ 84,0,237:24:0:0/1:87 +chr10 81060002 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81062102 . T TTCA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 81068165 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81072123 . A AGGATAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81081175 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81086152 . T A 14.3 . DP=4;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,1;MQ=46;PV4=1,1,0.45,0.11 PL:DP:SP:GT:GQ 44,0,11:3:0:0/1:14 +chr10 81086286 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81089074 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81113125 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 81120340 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 81142047 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81142057 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 81152540 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 81163784 . GC GCCCAACC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 81170540 . ggt gGTAACGAgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81178456 . GTG GTGTCTCTACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81192577 . A G 27 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.028,1,1 PL:DP:SP:GT:GQ 57,0,72:5:0:0/1:60 +chr10 81204218 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81207802 . TTCTC TTCTCTC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr10 81208058 . GCC GCCTTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81208484 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81222094 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81222099 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81244866 . A AATATGGGTAGCCAC 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 81260900 . a aACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81263634 . G A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 81267889 . A C 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 81267896 . G T 17.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 81274706 . G A 50.1 . DP=11;AF1=0.508;CI95=0.5,0.5;DP4=1,0,3,0;MQ=41;PV4=1,1,0.07,1 PL:DP:SP:GT:GQ 80,0,15:4:0:0/1:18 +chr10 81274719 . A C 26 . DP=8;AF1=0.5006;CI95=0.5,0.5;DP4=3,0,4,0;MQ=43;PV4=1,1,0.12,0.46 PL:DP:SP:GT:GQ 56,0,26:7:0:0/1:29 +chr10 81274984 . A C 18 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 81276437 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81277458 . C G 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 81281418 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 81282927 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81313753 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 81318820 . G A 30 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=47;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 60,0,89:10:0:0/1:63 +chr10 81318821 . T C 19.1 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,6;MQ=49;PV4=1,0.026,1,0.12 PL:DP:SP:GT:GQ 49,0,136:14:0:0/1:52 +chr10 81321343 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81344173 . TC TCTTGC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 81345987 . TC TCGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81355361 . T G 83.1 . DP=49;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=47 PL:DP:SP:GT:GQ 116,21,0:7:0:1/1:84 +chr10 81355389 . G A 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,5,4;MQ=47 PL:DP:SP:GT:GQ 149,27,0:9:0:1/1:99 +chr10 81363291 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81371637 . T C 3.01 . DP=11;AF1=0.4997;CI95=0.5,0.5;DP4=3,4,0,3;MQ=49;PV4=0.47,6.6e-05,0.014,1 PL:DP:SP:GT:GQ 30,0,238:10:3:0/1:33 +chr10 81371788 . A AAATTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81371953 . C T 52 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=48;PV4=1,0.018,0.00054,0.36 PL:DP:SP:GT:GQ 82,0,184:13:0:0/1:85 +chr10 81372891 . A C 7.8 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.14,0.44,0.13 PL:DP:SP:GT:GQ 37,0,46:5:0:0/1:39 +chr10 81373777 . C T 18.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,3,1,2;MQ=48;PV4=1,0.09,0.015,1 PL:DP:SP:GT:GQ 48,0,148:8:0:0/1:51 +chr10 81411180 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 81428915 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 81443274 . GAG GAGTAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 81664247 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81680725 . TTGC T 7.42 . INDEL;DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr10 81696411 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81701722 . T C 43 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=4,22,1,9;MQ=49;PV4=1,1.9e-11,7.9e-05,1 PL:DP:SP:GT:GQ 73,0,255:36:0:0/1:76 +chr10 81705081 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 81705545 . T TTGTGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81706324 . A G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,14,1,10;MQ=48;PV4=0.44,3.1e-05,5.2e-05,1 PL:DP:SP:GT:GQ 141,0,223:25:0:0/1:99 +chr10 81712556 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81784967 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81810422 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81841870 . T C 28.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 +chr10 81864573 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81882411 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 81886161 . tt tTGTAAt 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81916737 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81917708 . A G 68 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=11,6,18,0;MQ=49;PV4=0.0076,2.7e-10,0.018,1 PL:DP:SP:GT:GQ 98,0,255:35:21:0/1:99 +chr10 81920968 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81922174 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 81923047 . A AGGACT 12.7 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81930159 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81930489 . C T 10.4 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 81960144 . g gGCCGGGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81969070 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81997537 . G GATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82004816 . GC G 10.6 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr10 82017014 . at aTTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82038771 . C T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 82040052 . A G 90.2 . DP=28;AF1=0.7303;CI95=0.5,1;DP4=0,1,4,5;MQ=48;PV4=1,0.057,0.26,1 PL:DP:SP:GT:GQ 119,0,2:10:0:0/1:3 +chr10 82043576 . G A 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=46 PL:DP:SP:GT:GQ 148,45,0:15:0:1/1:99 +chr10 82112488 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 82132458 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 82181009 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 82182296 . G A 17.6 . DP=32;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 50,12,0:4:0:1/1:72 +chr10 82182301 . C A 37 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,8;MQ=49;PV4=1,0.0053,0.00033,1 PL:DP:SP:GT:GQ 67,0,195:24:0:0/1:70 +chr10 82185728 . C T 5.46 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=6,3,0,4;MQ=49;PV4=0.07,0.065,0.011,0.26 PL:DP:SP:GT:GQ 34,0,192:13:12:0/1:37 +chr10 82187345 . T TTC 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 82188949 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82189478 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 82218659 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82221735 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82234639 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 82244154 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82257598 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 82269611 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 82302014 . C CTTTTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82331347 . A G 76 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,11;MQ=48;PV4=0.14,0.015,0.052,1 PL:DP:SP:GT:GQ 106,0,149:18:9:0/1:99 +chr10 82372161 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 82374537 . G GCC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 82410044 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82416238 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82417905 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 82418031 . T A 4.85 . DP=2;AF1=0.9966;CI95=0.5,1;DP4=0,1,0,1;MQ=30;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,1,0:2:0:1/1:23 +chr10 82418449 . t tCCCAGC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82420204 . ca cAACACGCGTa 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 82458433 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 82459819 . G GCAT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 82461128 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82461669 . GA GAGAGATTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82476016 . T C 42.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 +chr10 82494692 . a aGG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 82497297 . A ACGTCATAGCAT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 82552612 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82628927 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 82638507 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 82660216 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 82679605 . C G 4.16 . DP=2;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,16:2:0:0/1:19 +chr10 82757199 . C CCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82758014 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 82887916 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82887926 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82893579 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 82895456 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82917142 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82937203 . ca cATCAGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82951796 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82956453 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82956466 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82971096 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 82971333 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 82989755 . a aGCG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 82999230 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 83075079 . ATC ATCAAACTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83075420 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83083716 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83087652 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 83095873 . c cACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83130340 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83151762 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83162919 . a aAATGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83173424 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 83173648 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83177028 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 83178200 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 83192634 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 83229796 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 83230546 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83309249 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 83335268 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 83357418 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 83394070 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 83406543 . T A 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 83435015 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 83438214 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 83439554 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83444419 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 83457135 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 83479414 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83488799 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83489400 . AA AAAGGTGGAGGCGCTGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83534027 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 83551799 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83607345 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83636718 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 83642035 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 83690205 . ggtctc g 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 83703281 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 83703284 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83722542 . gg gGGTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83728526 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83768713 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 83775089 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83801513 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83803153 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 83810587 . C T 6.98 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,36:2:0:0/1:36 +chr10 83862133 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83863601 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83869677 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 83870442 . g gAGAAGTC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 83905404 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 83910894 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 83965003 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83968765 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 83981512 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84005036 . t tACC 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 84021740 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84038425 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84042755 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 84043330 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84054180 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84060476 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 84065686 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 84077235 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 84120422 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 84125975 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 84129215 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84130443 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84141912 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84163245 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 84166297 . T TCGAGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84166420 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84166841 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84175166 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84212391 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 84235674 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84267484 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 84280200 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84284960 . G GTGTTAACA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 84315759 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 84320595 . tttat tt 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 84338105 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 84339344 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 84355187 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 84394101 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84408564 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84440363 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 84456107 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 84457834 . T TTGAGTTCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84477957 . gcc gCCcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84498193 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84509110 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 84541844 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 84547020 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84579748 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 84585149 . a aTGCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84602787 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84649739 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 84657295 . g gCTTCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84683572 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 84684477 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 84718675 . A G 6.2 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.27,0.16,1 PL:DP:SP:GT:GQ 35,0,40:4:0:0/1:37 +chr10 84724236 . TA TAATAATTCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84745447 . T C 15.1 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=49;PV4=1,0.39,0.01,1 PL:DP:SP:GT:GQ 45,0,64:9:0:0/1:48 +chr10 84774792 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84779668 . ta tACACa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84828746 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 84843813 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 84847522 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84922235 . AG AGTG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 84927128 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 84934525 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 84954621 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 84964484 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 85013695 . G T 3.57 . DP=2;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,16:2:0:0/1:19 +chr10 85030799 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 85049599 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 85124194 . T TCTCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85176040 . at aTCt 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 85179162 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85187260 . A G 7.02 . DP=2;AF1=0.5063;CI95=0.5,0.5;DP4=1,0,1,0;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,16:2:0:0/1:19 +chr10 85212410 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 85225284 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85284571 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 85289122 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 85317365 . GATAA GA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 85324778 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85345856 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 85373061 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85402287 . G GTGGGCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85460447 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85471910 . CA CACGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85502547 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 85523529 . A ACCAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85535338 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85560366 . g gCTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85625542 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85628855 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85651351 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 85662825 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85666266 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 85674138 . C T 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr10 85680042 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85688953 . TCC TCCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85710591 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85739388 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85748545 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 85761694 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 85777111 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 85778591 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 85792434 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85796585 . c cTGGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85798835 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 85801417 . a aTTCGAGAGAGAAGACCACT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85836102 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 85852374 . CA CAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85862287 . t tTCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85902496 . A T 10.4 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=3,5,0,5;MQ=48;PV4=0.23,1,0.033,1 PL:DP:SP:GT:GQ 40,0,99:13:6:0/1:43 +chr10 85903726 . C G 3.05 . DP=41;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.024,1,1 PL:DP:SP:GT:GQ 30,0,15:4:0:0/1:18 +chr10 85904756 . T G 6.98 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=7,3,0,4;MQ=50;PV4=0.07,0.026,0.00097,1 PL:DP:SP:GT:GQ 36,0,225:14:12:0/1:39 +chr10 85905883 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85910655 . T G 48.3 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 81,15,0:5:0:1/1:75 +chr10 85941720 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85952805 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 85968019 . A C 6.98 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=2,6,3,0;MQ=49;PV4=0.061,0.015,2.4e-05,1 PL:DP:SP:GT:GQ 36,0,221:11:12:0/1:39 +chr10 85968658 . A T 6.2 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,0.17,0.036,1 PL:DP:SP:GT:GQ 35,0,121:9:0:0/1:38 +chr10 85970696 . G A 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 85974381 . A G 44 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=0,19,0,14;MQ=49;PV4=1,2.9e-13,0.11,1 PL:DP:SP:GT:GQ 74,0,241:33:0:0/1:77 +chr10 85974567 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85981889 . G A 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.047,0.33,0.17 PL:DP:SP:GT:GQ 33,0,41:3:0:0/1:35 +chr10 85984149 . C G 33 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=3,6,10,0;MQ=48;PV4=0.0031,0.00053,0.045,1 PL:DP:SP:GT:GQ 63,0,209:19:25:0/1:66 +chr10 85989772 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 85992511 . T C 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,1,7,5;MQ=48;PV4=0.15,6.4e-06,0.00057,1 PL:DP:SP:GT:GQ 171,0,240:23:8:0/1:99 +chr10 85993836 . A G 99 . DP=27;AF1=1;CI95=1,1;DP4=0,1,9,13;MQ=46;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 255,49,0:23:0:1/1:99 +chr10 85994142 . A G 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,0,3;MQ=50;PV4=1,0.0039,0.027,1 PL:DP:SP:GT:GQ 32,0,193:9:0:0/1:35 +chr10 86001916 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86004873 . T C 75.1 . DP=24;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=49 PL:DP:SP:GT:GQ 108,21,0:7:0:1/1:84 +chr10 86008747 . C T 27 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=10,1,4,0;MQ=48;PV4=1,1,0.0034,1 PL:DP:SP:GT:GQ 57,0,129:15:0:0/1:60 +chr10 86012713 . C T 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,6,18;MQ=45 PL:DP:SP:GT:GQ 255,72,0:24:0:1/1:99 +chr10 86021964 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 86024532 . CAGT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86026633 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 86070584 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86123236 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 86149108 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 86158009 . T A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86181314 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86185654 . T G 57.1 . DP=30;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=49 PL:DP:SP:GT:GQ 90,21,0:7:0:1/1:84 +chr10 86211558 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 86226286 . ag aGGGCGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86251493 . a aGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 86252865 . a aTTGGATCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86293556 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86311649 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 86320383 . G A 65 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=9,11,5,7;MQ=37;PV4=1,1.9e-10,9.5e-05,0.49 PL:DP:SP:GT:GQ 95,0,255:32:0:0/1:98 +chr10 86320631 . A G 3.01 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=32;PV4=1,0.35,0.42,1 PL:DP:SP:GT:GQ 30,0,44:4:0:0/1:33 +chr10 86324932 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86340136 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86357830 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86362484 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86362787 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 86367384 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 86379603 . t tGTG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 86383260 . C A 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 86393047 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86418739 . T TAA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 86420493 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 86434639 . A ATGCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86451556 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86456291 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 86458385 . C G 4.14 . DP=2;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,20:2:0:0/1:23 +chr10 86476818 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 86479458 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86495365 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86504553 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 86523863 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86530573 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 86583586 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 86590539 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86590802 . A AAGTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86620711 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86640959 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86652677 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86700369 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 86715032 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86726910 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86728198 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 86741577 . T TGCATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86744523 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 86754996 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86759660 . c cCAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86805336 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 86863050 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 86898606 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 86961910 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 86989902 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 86997491 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 87002647 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 87088997 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87198046 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87208816 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87211607 . A AGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 87219035 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87246833 . a aCTCGACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 87247539 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87267276 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87298109 . C CCT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 87306327 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87315910 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 87318943 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 87323076 . TGC TGCAGC 9.05 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 87323113 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 87339813 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87393499 . ACT ACTCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 87413604 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87422101 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 87468735 . C T 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 87468742 . A C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87482854 . C A 5.46 . DP=33;AF1=0.4999;CI95=0.5,0.5;DP4=12,5,0,6;MQ=49;PV4=0.0046,0.00069,0.0033,1 PL:DP:SP:GT:GQ 34,0,255:23:23:0/1:37 +chr10 87482855 . CAT CATAT 19.5 . INDEL;DP=35;AF1=0.5;CI95=0.5,0.5;DP4=8,7,0,3;MQ=50;PV4=0.22,1,1,0.059 PL:DP:SP:GT:GQ 57,0,255:18:7:0/1:60 +chr10 87482991 . C T 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.057,0.0034,1 PL:DP:SP:GT:GQ 32,0,76:5:0:0/1:35 +chr10 87491000 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87555666 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 87562756 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87627368 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 87700608 . A T 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87707267 . C T 6.2 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,0,3;MQ=49;PV4=0.14,0.064,1,1 PL:DP:SP:GT:GQ 35,0,116:7:8:0/1:38 +chr10 87708811 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 87720176 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 87731985 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87736292 . G GGATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 87748502 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87751600 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 87807122 . ATT A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 87809706 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87813088 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87815027 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87818237 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87850930 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87857603 . TAA TAATGTGGGGAA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 87874388 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 87889968 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 87926450 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 87927738 . A AATAACACTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 87939066 . TCCCC TCCCCCC 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 87942496 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87966608 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88011651 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88012390 . T TCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 88026548 . A C 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 88027222 . C CACTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 88046628 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 88051505 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88054154 . G C 6.98 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr10 88073863 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88117355 . A G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 88140431 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88144281 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88153604 . A ATCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 88180534 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88187022 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88213651 . A G 65.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 98,12,0:4:0:1/1:72 +chr10 88220866 . C T 31 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.007,0,1 PL:DP:SP:GT:GQ 61,0,80:4:0:0/1:64 +chr10 88231617 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 88233628 . C G 77 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,7,1;MQ=48;PV4=1,0.00086,0.0007,1 PL:DP:SP:GT:GQ 107,0,148:14:0:0/1:99 +chr10 88256943 . C T 57 . DP=9;AF1=0.5001;CI95=0.5,0.5;DP4=3,0,1,4;MQ=48;PV4=0.14,1,0.09,0.43 PL:DP:SP:GT:GQ 87,0,35:8:8:0/1:38 +chr10 88277875 . A G 10.6 . DP=3;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0,1 PL:DP:SP:GT:GQ 40,0,11:3:0:0/1:14 +chr10 88296464 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88345959 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88356554 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88418535 . C T 50 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 82,9,0:3:0:1/1:63 +chr10 88419122 . C T 23 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=5,4,1,4;MQ=48;PV4=0.3,0.45,0.013,1 PL:DP:SP:GT:GQ 53,0,130:14:5:0/1:56 +chr10 88419641 . G A 77 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,3,3;MQ=48;PV4=0.55,0.00069,0.00054,0.49 PL:DP:SP:GT:GQ 107,0,186:12:3:0/1:99 +chr10 88420974 . GCCC GCCCCGCCCC 3.25 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 88424771 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88425754 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 88428081 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 88428429 . C A 19.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=8,2,4,0;MQ=48;PV4=1,0.25,0.00016,1 PL:DP:SP:GT:GQ 49,0,184:14:0:0/1:52 +chr10 88446794 . T TGTCATCCG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 88447382 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88459892 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88469566 . C G 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,37:2:0:0/1:32 +chr10 88470359 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 88476122 . T G 28 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,9,0,5;MQ=48;PV4=1,0.18,0.00077,1 PL:DP:SP:GT:GQ 58,0,166:15:0:0/1:61 +chr10 88486102 . CT C 8.18 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=50;PV4=1,0.17,1,1 PL:DP:SP:GT:GQ 45,0,55:4:0:0/1:48 +chr10 88492815 . T TTAGATGA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,113:4:0:0/1:41 +chr10 88494716 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88520436 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88576450 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88592621 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88606531 . GTC GTCGCACTC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 88606601 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 88611575 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 88614656 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88617531 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 88621945 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 88659912 . T C 11.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=40 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 88677115 . T G 4.77 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,0,3;MQ=50;PV4=1,0.11,0.11,1 PL:DP:SP:GT:GQ 33,0,88:8:0:0/1:36 +chr10 88683490 . GGAG GGAGAG 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 88698619 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 88702350 . G C 30 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 +chr10 88704914 . G GTGT 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.12 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 88711157 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 88730374 . C T 15.1 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.05,0.11,1 PL:DP:SP:GT:GQ 45,0,37:3:0:0/1:39 +chr10 88758144 . T A 9.31 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 88761481 . T C 7.8 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=37;PV4=1,0.34,1,0.32 PL:DP:SP:GT:GQ 37,0,67:9:0:0/1:40 +chr10 88768253 . A G 99 . DP=54;AF1=1;CI95=1,1;DP4=1,0,28,18;MQ=21;PV4=1,1,0.0001,1 PL:DP:SP:GT:GQ 209,116,0:47:0:1/1:99 +chr10 88768423 . A G 37 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=16,17,8,13;MQ=22;PV4=0.58,1.7e-16,0.061,1 PL:DP:SP:GT:GQ 67,0,195:54:2:0/1:70 +chr10 88768657 . C T 99 . DP=43;AF1=1;CI95=1,1;DP4=1,1,17,10;MQ=43;PV4=1,0.18,1,1 PL:DP:SP:GT:GQ 255,49,0:29:0:1/1:99 +chr10 88769295 . G T 3.54 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=5,5,4,0;MQ=47;PV4=0.22,0.026,0.25,1 PL:DP:SP:GT:GQ 31,0,246:14:7:0/1:34 +chr10 88769310 . A G 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,3,0;MQ=48;PV4=0.029,0.045,0.21,0.045 PL:DP:SP:GT:GQ 33,0,68:7:15:0/1:36 +chr10 88769747 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88786419 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88811625 . T C 19.1 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=7,4,0,5;MQ=49;PV4=0.034,0.037,0.0073,0.16 PL:DP:SP:GT:GQ 49,0,239:16:15:0/1:52 +chr10 88815264 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 88818720 . T C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 88819954 . G A 48 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,2;MQ=46;PV4=0.49,0.17,0.045,1 PL:DP:SP:GT:GQ 78,0,123:7:3:0/1:81 +chr10 88820356 . G C 6.2 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=48;PV4=1,0.011,0.072,1 PL:DP:SP:GT:GQ 35,0,114:8:0:0/1:38 +chr10 88825843 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88908337 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88908346 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88939927 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88988193 . C A 3.03 . DP=2;AF1=0.5037;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,18:2:0:0/1:21 +chr10 89148667 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89221269 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 89255258 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 89277019 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 89277227 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89280764 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89301240 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89309928 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 89312349 . G GAGCT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 89337672 . t tTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89348670 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 89351682 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89351838 . a aTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89388739 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 89430429 . AG AGAAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89441440 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 89454249 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 89464169 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 89469083 . CATATATATATATATATATA CATATATATATATATA 37.5 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,1,1,0.39 PL:DP:SP:GT:GQ 75,0,56:4:0:0/1:59 +chr10 89469097 . TA TACA 33.5 . INDEL;DP=12;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 71,0,27:3:0:0/1:30 +chr10 89490608 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89495465 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 89511728 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 89518846 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 89535827 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89598275 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 89603677 . C T 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 89613914 . a aCAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89631139 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 89633222 . a aTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89651827 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 89673402 . tcttc t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89690952 . ttta tTTATCtta 32.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 71,6,0:2:0:1/1:49 +chr10 89695474 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 89697521 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 89698851 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89728530 . TC TCTGTCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 89737086 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89783945 . ga gACa 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 89784629 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 89787518 . CTC CTCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89796331 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 89814630 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 89851840 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 89911816 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 89952634 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89967999 . T TAGTGGGGATAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89972699 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 89984258 . TT TTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89992185 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 90001697 . TCT TCTGCGCGCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90020532 . T TGGCATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90041225 . GGG GGGCAGCTAGCTGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 90043114 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90091871 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 90094058 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90111297 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90121243 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 90129568 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 90130787 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90138628 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 90169240 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90198943 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 90223529 . TA TAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90242132 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 90261721 . a aGAGGGGGGAG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 90266451 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 90287556 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 90288228 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90289232 . G T 4.18 . DP=2;AF1=0.51;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,14:2:0:0/1:17 +chr10 90302291 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90353667 . A C 5.46 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.41,1,1 PL:DP:SP:GT:GQ 34,0,37:6:0:0/1:35 +chr10 90353833 . C T 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,12;MQ=47;PV4=0.48,0.00087,4.2e-11,1 PL:DP:SP:GT:GQ 176,0,255:25:3:0/1:99 +chr10 90354423 . G C 36 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=41;PV4=1,0.061,0.014,0.35 PL:DP:SP:GT:GQ 66,0,99:7:0:0/1:69 +chr10 90354430 . T C 83 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,1;MQ=44;PV4=1,0.034,0.011,0.46 PL:DP:SP:GT:GQ 113,0,150:11:0:0/1:99 +chr10 90354589 . A G 35 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.29,0.015,1 PL:DP:SP:GT:GQ 65,0,52:5:0:0/1:55 +chr10 90356598 . A G 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,5,7;MQ=43 PL:DP:SP:GT:GQ 255,36,0:12:0:1/1:99 +chr10 90362383 . A C 3.01 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=0,10,4,0;MQ=49;PV4=0.001,0.0012,0.049,1 PL:DP:SP:GT:GQ 30,0,198:14:30:0/1:33 +chr10 90365293 . CA CACGCGAA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 90376421 . C T 46 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,1;MQ=42;PV4=1,0.2,1,1 PL:DP:SP:GT:GQ 76,0,33:3:0:0/1:36 +chr10 90399123 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90404926 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 90428286 . A C 8.65 . DP=10;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,3,0;MQ=47;PV4=1,0.38,0.17,1 PL:DP:SP:GT:GQ 38,0,25:5:0:0/1:28 +chr10 90438327 . T G 6.2 . DP=41;AF1=0.4999;CI95=0.5,0.5;DP4=14,6,0,7;MQ=49;PV4=0.0019,0.00013,0.00028,1 PL:DP:SP:GT:GQ 35,0,255:27:27:0/1:38 +chr10 90487906 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 90523485 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 90537506 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90545972 . T G 16.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr10 90546007 . A G 4.61 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 90546055 . C T 85 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,3;MQ=47;PV4=0.57,0.00036,0.00044,1 PL:DP:SP:GT:GQ 115,0,147:10:2:0/1:99 +chr10 90546142 . T G 8.44 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 90549132 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90563750 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 90565291 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 90567596 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 90570928 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90585819 . G A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,13,5;MQ=49;PV4=0.32,0.039,0.31,1 PL:DP:SP:GT:GQ 156,28,0:19:0:1/1:99 +chr10 90600588 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 90607824 . ttt tTTTCtt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 90615705 . gg gGCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90634858 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90635749 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 90652027 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 90671471 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90674251 . A C 96 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=14,0,13,0;MQ=49;PV4=1,9e-08,0.00048,1 PL:DP:SP:GT:GQ 126,0,228:27:0:0/1:99 +chr10 90700899 . A G 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 33,0,83:3:0:0/1:36 +chr10 90751809 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 90752460 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90767395 . G C 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=43 PL:DP:SP:GT:GQ 167,18,0:6:0:1/1:90 +chr10 90770439 . C G 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=15,4,7,4;MQ=47;PV4=0.42,0.037,8.5e-08,0.026 PL:DP:SP:GT:GQ 234,0,255:30:4:0/1:99 +chr10 90771829 . T C 47.3 . DP=32;AF1=0.543;CI95=0.5,1;DP4=0,1,0,8;MQ=48;PV4=1,0.014,0.15,0.081 PL:DP:SP:GT:GQ 77,0,8:9:0:0/1:11 +chr10 90783373 . TCACA TCA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 90812175 . GTA GTAGCTCTTACTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90817798 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90859916 . TT TTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90862777 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 90867468 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90877078 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 90884968 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90904391 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90937828 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90966238 . G A 15.9 . DP=6;AF1=0.6243;CI95=0.5,1;DP4=1,0,3,0;MQ=48;PV4=1,1,0.21,0.16 PL:DP:SP:GT:GQ 45,0,4:4:0:0/1:6 +chr10 90966546 . C T 99 . DP=60;AF1=1;CI95=1,1;DP4=1,1,7,34;MQ=50;PV4=0.34,0.0014,0.33,1 PL:DP:SP:GT:GQ 133,78,0:43:5:1/1:99 +chr10 90966996 . C G 58 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=49 PL:DP:SP:GT:GQ 91,27,0:9:0:1/1:99 +chr10 90967043 . AG AGGG 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90996040 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91005901 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91024063 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91066460 . T A 50.1 . DP=42;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=50 PL:DP:SP:GT:GQ 83,21,0:7:0:1/1:84 +chr10 91066769 . C A 22.1 . DP=41;AF1=0.508;CI95=0.5,0.5;DP4=1,0,1,2;MQ=48;PV4=1,0.0099,0.25,1 PL:DP:SP:GT:GQ 52,0,15:4:0:0/1:18 +chr10 91070751 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91092177 . TT TTTCGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 91099943 . C G 31 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr10 91122549 . C T 4.23 . DP=4;AF1=0.5205;CI95=0.5,0.5;DP4=1,0,0,2;MQ=48;PV4=0.33,1,0.33,1 PL:DP:SP:GT:GQ 32,0,11:3:0:0/1:14 +chr10 91128219 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91128222 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91137826 . T C 99 . DP=24;AF1=1;CI95=0.5,1;DP4=1,0,13,0;MQ=45;PV4=1,1,0.07,1 PL:DP:SP:GT:GQ 182,15,0:14:0:1/1:75 +chr10 91137974 . T G 4.84 . DP=12;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,1,0.17,0.41 PL:DP:SP:GT:GQ 33,0,13:3:0:0/1:16 +chr10 91141345 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 91143529 . T A 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 91144490 . T G 7.8 . DP=6;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,2;MQ=44;PV4=1,1,1,0.12 PL:DP:SP:GT:GQ 37,0,23:4:0:0/1:26 +chr10 91147856 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91162182 . C T 57 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,10,1,6;MQ=49;PV4=1,0.00015,0.022,1 PL:DP:SP:GT:GQ 87,0,236:18:0:0/1:90 +chr10 91162677 . C T 99 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,2,5,2;MQ=48;PV4=1,0.0071,0.0038,1 PL:DP:SP:GT:GQ 131,0,218:15:0:0/1:99 +chr10 91174554 . TC TCGTGAC 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,0.15,1,0.05 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 91177772 . A G 14.7 . DP=20;AF1=0.5718;CI95=0.5,1;DP4=1,0,2,1;MQ=49;PV4=1,1,0.21,0.4 PL:DP:SP:GT:GQ 44,0,6:4:0:0/1:8 +chr10 91178000 . C T 99 . DP=42;AF1=1;CI95=1,1;DP4=0,1,3,35;MQ=48;PV4=1,0.0097,0.11,1 PL:DP:SP:GT:GQ 185,83,0:39:0:1/1:99 +chr10 91197692 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 91222287 . A C 9.49 . DP=32;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 41,9,0:3:0:1/1:63 +chr10 91227415 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 91246833 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 91261216 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91265967 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91278933 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 91280662 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 91286050 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91339921 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91352942 . GT GTGTT 3.25 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,0.16 PL:DP:SP:GT:GQ 38,0,88:4:0:0/1:41 +chr10 91352944 . A T 3.01 . DP=24;AF1=0.4997;CI95=0.5,0.5;DP4=2,1,1,1;MQ=48;PV4=1,0.037,0.34,1 PL:DP:SP:GT:GQ 30,0,111:5:0:0/1:33 +chr10 91352948 . C T 41 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=3,2,3,2;MQ=46;PV4=1,0.048,0.1,1 PL:DP:SP:GT:GQ 71,0,137:10:0:0/1:74 +chr10 91352966 . G A 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,5,13;MQ=49 PL:DP:SP:GT:GQ 173,54,0:18:0:1/1:99 +chr10 91354354 . A G 44.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=43 PL:DP:SP:GT:GQ 77,12,0:4:0:1/1:72 +chr10 91354359 . A G 11.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 91354372 . T G 11.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 91359342 . GA GACCTGACAA 7.52 . INDEL;DP=8;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,10:2:0:0/1:13 +chr10 91371844 . C T 22 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,13;MQ=50;PV4=1,3.9e-12,0.15,1 PL:DP:SP:GT:GQ 52,0,227:27:0:0/1:55 +chr10 91375693 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 91404332 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91434498 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 91436481 . GA GAGCAA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 91438201 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 91448700 . A G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91469653 . TA TAGA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 91469725 . T TCG 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 91477145 . A G 12 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 91478319 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 91487649 . A T 18.8 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr10 91498127 . T C 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,2,20;MQ=47 PL:DP:SP:GT:GQ 195,66,0:22:0:1/1:99 +chr10 91522605 . G C 99 . DP=15;AF1=1;CI95=0.5,1;DP4=0,1,0,9;MQ=43;PV4=1,1,0.45,1 PL:DP:SP:GT:GQ 163,14,0:10:0:1/1:70 +chr10 91555853 . ag aGTCCTGGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 91573508 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91593434 . tt tTCCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 91599536 . tag tAGag 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 91609760 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 91615524 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91643941 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91645325 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 91676499 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 91679626 . T A 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91685794 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 91738755 . T C 71.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=47 PL:DP:SP:GT:GQ 104,15,0:5:0:1/1:75 +chr10 91784676 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 91795602 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91812553 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91814660 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 91822116 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 91826863 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 91888556 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91904505 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91937076 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91973550 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 91978154 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 91997146 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92025009 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92057538 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92111437 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92124892 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 92140189 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 92151151 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92214350 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 92243044 . caag c 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 92243945 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92249362 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 92284546 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92284566 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92289304 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92368328 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 92384075 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92391273 . aa aATTTGGTTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92439704 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 92445617 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 92493475 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 92509348 . G A 28 . DP=11;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,4;MQ=46;PV4=0.2,0.00036,0.15,0.017 PL:DP:SP:GT:GQ 58,0,35:5:0:0/1:38 +chr10 92537599 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92538774 . A T 3.59 . DP=2;AF1=0.51;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,14:2:0:0/1:17 +chr10 92544022 . T TTTGGCCAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92550623 . aga aGATTCTAGga 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 92573198 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92589330 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 92604898 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92617589 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92635721 . A G 6.79 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 92638707 . CAGTA CAGTAGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92675317 . G C 6.2 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,3,0;MQ=49;PV4=1,0.21,0.028,1 PL:DP:SP:GT:GQ 35,0,88:8:0:0/1:38 +chr10 92678644 . T C 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,2,0;MQ=48;PV4=0.47,1,0.24,1 PL:DP:SP:GT:GQ 32,0,55:6:3:0/1:35 +chr10 92678744 . a aTC 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92680858 . A G 4.13 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,3;MQ=48;PV4=1,0.29,0.31,0.49 PL:DP:SP:GT:GQ 32,0,35:5:0:0/1:33 +chr10 92686533 . C T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 92724831 . T TCC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 92744379 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 92776526 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 92813600 . A G 14.2 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,1;MQ=48;PV4=1,0.22,0.33,1 PL:DP:SP:GT:GQ 44,0,38:3:0:0/1:40 +chr10 92830619 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 92855089 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92862055 . g gAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 92894100 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92920368 . GGA GGAGTCGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92920854 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 92934409 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92951310 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 93000211 . G A 80 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,8,0;MQ=48;PV4=1,5.9e-06,2.9e-05,1 PL:DP:SP:GT:GQ 110,0,202:17:0:0/1:99 +chr10 93026047 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93039473 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93043372 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93147890 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93150514 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93169342 . ACT A 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 93173628 . CTG CTGGTG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 93192344 . G GGAGGGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93224382 . T A 3.69 . DP=3;AF1=0.5334;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0,0.055 PL:DP:SP:GT:GQ 31,0,9:3:0:0/1:12 +chr10 93228663 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 93238035 . T C 5.46 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=46;PV4=1,0.22,0.05,0.46 PL:DP:SP:GT:GQ 34,0,65:5:0:0/1:37 +chr10 93247572 . A C 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 93247599 . T C 7.8 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=45;PV4=1,0.098,0.2,1 PL:DP:SP:GT:GQ 37,0,38:3:0:0/1:37 +chr10 93257936 . T G 3.01 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=49;PV4=1,0.25,0.048,1 PL:DP:SP:GT:GQ 30,0,57:4:0:0/1:33 +chr10 93258596 . C G 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 93259162 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93269781 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93300368 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93370835 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 93408766 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 93423278 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93426709 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93439842 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 93461463 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93488081 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 93496289 . aga aGATTCGga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93498177 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 93503647 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 93550795 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93556896 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93574633 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 93579412 . T C 6.2 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,42:2:0:0/1:37 +chr10 93601285 . G C 38 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,3;MQ=45;PV4=1,0.09,0.19,1 PL:DP:SP:GT:GQ 68,0,38:4:0:0/1:41 +chr10 93604827 . A G 4.17 . DP=6;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.23,0.17,1 PL:DP:SP:GT:GQ 32,0,15:3:0:0/1:18 +chr10 93608142 . G A 17.1 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=4,7,4,1;MQ=49;PV4=0.28,0.0068,0.016,0.19 PL:DP:SP:GT:GQ 47,0,255:16:5:0/1:50 +chr10 93611176 . ATATG ATATGTATG 74.5 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=50;PV4=1,1,1,0.25 PL:DP:SP:GT:GQ 112,0,77:5:0:0/1:80 +chr10 93613037 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93623390 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 93634848 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 93686791 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93695432 . T G 4.13 . DP=24;AF1=0.4998;CI95=0.5,0.5;DP4=11,1,0,4;MQ=49;PV4=0.0027,0.084,2.1e-06,1 PL:DP:SP:GT:GQ 32,0,198:16:26:0/1:35 +chr10 93702377 . T G 72 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 105,24,0:8:0:1/1:96 +chr10 93723795 . T C 6.2 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=9,2,3,0;MQ=49;PV4=1,0.13,1.7e-05,1 PL:DP:SP:GT:GQ 35,0,221:14:0:0/1:38 +chr10 93726563 . ta tCCa 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93736600 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 93746223 . C CCTTTAAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93752036 . T G 10.4 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=2,9,0,5;MQ=49;PV4=1,0.1,0.13,1 PL:DP:SP:GT:GQ 40,0,182:16:0:0/1:43 +chr10 93761342 . g gACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93763651 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 93773922 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93775008 . A AGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93778645 . T A 6.98 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=12,1,0,6;MQ=49;PV4=0.00026,0.00012,0.0024,1 PL:DP:SP:GT:GQ 36,0,241:19:36:0/1:39 +chr10 93802534 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93841227 . A G 99 . DP=28;AF1=1;CI95=1,1;DP4=1,0,8,13;MQ=46;PV4=0.41,1,0.053,1 PL:DP:SP:GT:GQ 255,42,0:22:0:1/1:99 +chr10 93866695 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93881558 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93882855 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 93891656 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93921930 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93926913 . gg gGACATTCTTAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93933682 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 93956184 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 93974267 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 93997867 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 94110772 . TC TCCC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94111721 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 94156769 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94161554 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94165121 . G GA 5.62 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 94181698 . t tGACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94209872 . A T 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94225633 . A C 4.13 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=1,3,0,3;MQ=49;PV4=1,0.046,0.065,1 PL:DP:SP:GT:GQ 32,0,82:7:0:0/1:35 +chr10 94267311 . A G 10.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 94274659 . A G 9.52 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,0,4,0;MQ=49;PV4=1,0.0035,0.14,0.014 PL:DP:SP:GT:GQ 39,0,36:5:0:0/1:37 +chr10 94281207 . t tACGTGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94294223 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94301663 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 94366307 . A ATACGGTGAC 5.95 . INDEL;DP=4;AF1=0.5263;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,10:2:0:0/1:13 +chr10 94366958 . T A 3.01 . DP=17;AF1=0.4997;CI95=0.5,0.5;DP4=7,3,0,3;MQ=49;PV4=0.07,0.0034,0.051,0.4 PL:DP:SP:GT:GQ 30,0,255:13:12:0/1:33 +chr10 94377523 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94392513 . AT ATCCGTT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94392514 . TAA TAAAAAAA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94401196 . g gGGT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 94417250 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94423003 . aaatt a 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 94429530 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 94431752 . T G 35 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=42 PL:DP:SP:GT:GQ 67,9,0:3:0:1/1:63 +chr10 94452146 . CCT CCTCT 15.7 . INDEL;DP=11;AF1=0.5129;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 53,0,13:3:0:0/1:16 +chr10 94452147 . CTT CTTTT,CTCTTT 17.3 . INDEL;DP=11;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 97,47,54,41,0,51:3:0:1/1:49 +chr10 94461200 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94461209 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94471005 . tttt tTTTGTCCTCTTAGttt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94488684 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 94495668 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 94507612 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 94526478 . a aCACTTTT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 94534901 . tt tTATAAGAt 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 94554131 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 94573680 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94594565 . G A 73 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=11,20,5,11;MQ=50;PV4=1,3.2e-22,1.4e-05,0.17 PL:DP:SP:GT:GQ 103,0,255:47:0:0/1:99 +chr10 94599494 . TT TTACAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94613964 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94623390 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94654223 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 94660631 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 94679719 . A C 7.59 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 94688167 . C G 9.52 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,3;MQ=49;PV4=0.1,0.0066,0.25,0.33 PL:DP:SP:GT:GQ 39,0,100:6:10:0/1:42 +chr10 94688797 . T TGGCCCCGG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 94695555 . G A 3.01 . DP=11;AF1=0.4997;CI95=0.5,0.5;DP4=4,2,3,0;MQ=49;PV4=0.5,0.00015,0.085,1 PL:DP:SP:GT:GQ 30,0,218:9:3:0/1:33 +chr10 94695617 . C T 61.8 . DP=21;AF1=0.95;CI95=0.5,1;DP4=1,0,1,6;MQ=48;PV4=0.25,0.38,0.24,1 PL:DP:SP:GT:GQ 90,0,0:8:0:1/1:10 +chr10 94696169 . G C 20.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 94700683 . t tAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 94712118 . T C 12.3 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,4;MQ=49;PV4=0.048,0.01,0.4,0.15 PL:DP:SP:GT:GQ 42,0,165:10:13:0/1:45 +chr10 94725908 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94755021 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94757270 . C T 52 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,2,8,0;MQ=48;PV4=0.16,0.085,0.35,0.36 PL:DP:SP:GT:GQ 82,0,121:14:8:0/1:85 +chr10 94764020 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 94773054 . G GTGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94775970 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94816807 . GAAA GAAAA 99 . INDEL;DP=22;AF1=1;CI95=1,1;DP4=0,1,0,15;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 159,34,0:16:0:1/1:99 +chr10 94828155 . C A 4.29 . DP=8;AF1=0.5334;CI95=0.5,1;DP4=0,1,0,3;MQ=46;PV4=1,1,0.22,0.01 PL:DP:SP:GT:GQ 32,0,9:4:0:0/1:12 +chr10 94896034 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 94905471 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94915656 . AAGAAG AAGAAGGACTCCTAGGAGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94968734 . TC TCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94972295 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 94993147 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94993158 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94996844 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95007326 . G GTGAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95041876 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 95043763 . G A 91 . DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=25 PL:DP:SP:GT:GQ 124,30,0:10:0:1/1:99 +chr10 95044055 . C T 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=45;PV4=1,0.02,0.18,0.23 PL:DP:SP:GT:GQ 34,0,79:4:0:0/1:37 +chr10 95054809 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 95072906 . T C 34.5 . DP=49;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=49 PL:DP:SP:GT:GQ 67,12,0:4:0:1/1:72 +chr10 95073046 . A G 22 . DP=6;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.44,0.19,0.17 PL:DP:SP:GT:GQ 52,0,26:3:0:0/1:29 +chr10 95089312 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 95089670 . T C 36.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 69,15,0:5:0:1/1:75 +chr10 95091494 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 95093048 . T TCTGCATAGGGAG 4.41 . INDEL;DP=44;AF1=1;CI95=1,1;DP4=0,0,13,24;MQ=50 PL:DP:SP:GT:GQ 43,111,0:37:0:1/1:99 +chr10 95094777 . TTC T 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 95095667 . A G 99 . DP=32;AF1=1;CI95=1,1;DP4=0,0,16,12;MQ=48 PL:DP:SP:GT:GQ 240,84,0:28:0:1/1:99 +chr10 95097537 . T C 9.31 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 95111533 . G T 6.98 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=14,1,0,5;MQ=49;PV4=0.00039,0.027,0.0005,1 PL:DP:SP:GT:GQ 36,0,210:20:34:0/1:39 +chr10 95119504 . T G 14.2 . DP=8;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,3,0;MQ=45;PV4=1,1,0.37,1 PL:DP:SP:GT:GQ 44,0,22:5:0:0/1:25 +chr10 95132767 . C T 66 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=17,21,14,16;MQ=50;PV4=1,5e-34,0.065,1 PL:DP:SP:GT:GQ 96,0,255:68:0:0/1:99 +chr10 95132905 . C T 4.15 . DP=26;AF1=0.503;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.27,0.33,1 PL:DP:SP:GT:GQ 32,0,19:3:0:0/1:22 +chr10 95148925 . AT ATAGT 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 38,0,91:4:0:0/1:41 +chr10 95155962 . C A 7.8 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,3;MQ=48;PV4=1,0.12,0.039,1 PL:DP:SP:GT:GQ 37,0,145:9:0:0/1:40 +chr10 95162113 . G C 69 . DP=27;AF1=1;CI95=1,1;DP4=0,0,0,23;MQ=49 PL:DP:SP:GT:GQ 102,69,0:23:0:1/1:99 +chr10 95164040 . A G 33.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 65,6,0:2:0:1/1:49 +chr10 95168634 . A G 99 . DP=60;AF1=1;CI95=1,1;DP4=1,0,24,21;MQ=44;PV4=1,1,0.00065,1 PL:DP:SP:GT:GQ 255,107,0:46:0:1/1:99 +chr10 95168735 . C G 99 . DP=30;AF1=1;CI95=1,1;DP4=0,1,1,25;MQ=47;PV4=1,0.0044,0.12,1 PL:DP:SP:GT:GQ 168,35,0:27:0:1/1:99 +chr10 95173952 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 95212154 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 95218795 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95222587 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95241999 . A C 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,0,26;MQ=46 PL:DP:SP:GT:GQ 164,78,0:26:0:1/1:99 +chr10 95250095 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95259979 . C G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,1,3,21;MQ=49;PV4=1,0.071,0.36,1 PL:DP:SP:GT:GQ 134,51,0:25:0:1/1:99 +chr10 95262981 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,22,9;MQ=50 PL:DP:SP:GT:GQ 161,93,0:31:0:1/1:99 +chr10 95263184 . TT TTGT 6.1 . INDEL;DP=11;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,7:2:0:0/1:10 +chr10 95279653 . A G 28.3 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:DP:SP:GT:GQ 61,15,0:5:0:1/1:75 +chr10 95321189 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 95354451 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95362027 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 95367221 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95367341 . gaggt g 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95389143 . AGT AGTGT 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95395243 . AT ATT 3.25 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 95395247 . A G 99 . DP=7;AF1=0.5207;CI95=0.5,1;DP4=1,0,3,1;MQ=44;PV4=1,1,0,1 PL:DP:SP:GT:GQ 136,0,11:5:0:0/1:14 +chr10 95400054 . C G 72 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,11;MQ=48;PV4=1,3.2e-05,0.0029,1 PL:DP:SP:GT:GQ 102,0,161:18:0:0/1:99 +chr10 95400641 . AA AACGTA 7.35 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 95400773 . T G 47 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,7;MQ=48;PV4=0.22,0.047,0.064,1 PL:DP:SP:GT:GQ 77,0,43:9:0:0/1:46 +chr10 95405665 . CTAT CT 79.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=13,0,5,0;MQ=50;PV4=1,3.1e-12,1,1 PL:DP:SP:GT:GQ 117,0,232:18:0:0/1:99 +chr10 95406809 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 95410877 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 95412914 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95412921 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95422303 . A C 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 95457992 . A G 76 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,1,2,5;MQ=49;PV4=0.24,1.2e-06,0.057,1 PL:DP:SP:GT:GQ 106,0,145:11:6:0/1:99 +chr10 95458141 . A G 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,16,2,8;MQ=48;PV4=0.14,2e-05,1.2e-10,0.085 PL:DP:SP:GT:GQ 176,0,238:26:9:0/1:99 +chr10 95459817 . C T 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,10,2;MQ=49 PL:DP:SP:GT:GQ 140,36,0:12:0:1/1:99 +chr10 95463047 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 95518588 . T A 3.01 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=3,1,0,3;MQ=50;PV4=0.14,0.032,0.14,1 PL:DP:SP:GT:GQ 30,0,125:7:8:0/1:33 +chr10 95522747 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 95549967 . T G 8.93 . DP=13;AF1=0.543;CI95=0.5,1;DP4=0,1,0,4;MQ=47;PV4=1,0.46,0.13,1 PL:DP:SP:GT:GQ 38,0,8:5:0:0/1:11 +chr10 95552455 . G T 18.1 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,0,5,0;MQ=49;PV4=1,0.11,0.0028,1 PL:DP:SP:GT:GQ 48,0,122:15:0:0/1:51 +chr10 95557587 . G GCTGCTGC 7.35 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 95557592 . TTT TTTACGTT 7.35 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 95557593 . T G 32.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 65,12,0:4:0:1/1:72 +chr10 95608426 . aa aAGCa 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 95616624 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95630944 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95641536 . A C 34 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=47 PL:DP:SP:GT:GQ 66,9,0:3:0:1/1:63 +chr10 95647093 . G C 3.58 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,15:2:0:0/1:18 +chr10 95658258 . C G 13.2 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=5,0,2,0;MQ=48;PV4=1,0.038,0.00048,1 PL:DP:SP:GT:GQ 43,0,153:7:0:0/1:46 +chr10 95674257 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95683119 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 95684557 . gaga g 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 95720111 . CC CCTC 7.37 . INDEL;DP=3;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr10 95745885 . A AAGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95747506 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 95761511 . T TGGTGGACGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95835015 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 95871120 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 95875602 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95897615 . C A 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0.23,0,1 PL:DP:SP:GT:GQ 34,0,83:3:0:0/1:37 +chr10 95936532 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95938282 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 95982598 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96010426 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96013688 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 96013769 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96022349 . G A 22 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=36,9,0,11;MQ=49;PV4=1.1e-06,8.7e-05,3.4e-10,0.48 PL:DP:SP:GT:GQ 52,0,255:56:59:0/1:55 +chr10 96028754 . T G 18.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=13,3,0,6;MQ=49;PV4=0.0011,0.0012,0.036,0.33 PL:DP:SP:GT:GQ 48,0,255:22:29:0/1:51 +chr10 96037450 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 96044579 . A C 6.2 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=2,3,3,0;MQ=48;PV4=0.2,0.026,0.24,1 PL:DP:SP:GT:GQ 35,0,144:8:7:0/1:38 +chr10 96052990 . C G 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 96068581 . ata aTACAAGTGta 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=49;PV4=1,1,1,0.072 PL:DP:SP:GT:GQ 41,0,65:3:0:0/1:44 +chr10 96073608 . G GCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 96084676 . A G 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,0,2;MQ=48;PV4=0.1,0.022,0.039,0.25 PL:DP:SP:GT:GQ 30,0,70:5:10:0/1:33 +chr10 96087832 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 96097991 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 96100314 . A C 8.65 . DP=12;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.23,0.27,1 PL:DP:SP:GT:GQ 38,0,26:3:0:0/1:29 +chr10 96104665 . T G 99 . DP=25;AF1=1;CI95=1,1;DP4=1,0,6,16;MQ=49;PV4=0.3,3.4e-07,0.33,0.27 PL:DP:SP:GT:GQ 149,19,0:23:0:1/1:76 +chr10 96114835 . G A 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,6,5;MQ=49 PL:DP:SP:GT:GQ 148,33,0:11:0:1/1:99 +chr10 96117892 . T G 16.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=10,1,0,5;MQ=49;PV4=0.0014,0.00087,0.0039,0.31 PL:DP:SP:GT:GQ 46,0,225:16:29:0/1:49 +chr10 96133925 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96138386 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 96149254 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96191906 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96194532 . tgtg tGTGGgtg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 96198394 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96212760 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96237287 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96252948 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96271298 . A C 65 . DP=25;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 98,27,0:9:0:1/1:99 +chr10 96290906 . A C 13 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 96313960 . A C 22.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 55,12,0:4:0:1/1:72 +chr10 96313974 . T C 5.29 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 96321247 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96322546 . A G 8.44 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 96334978 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96336654 . A AGCT 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,93:4:0:0/1:41 +chr10 96337974 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96341336 . A C 7.59 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 96356569 . gt gTTt 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 96372493 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96390943 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96426296 . A C 10.4 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=1,0,0,2;MQ=38;PV4=0.33,0.057,1,0.18 PL:DP:SP:GT:GQ 40,3,0:3:0:1/1:41 +chr10 96448278 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96454636 . T A 3.98 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 96493058 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=1,0,12,2;MQ=45;PV4=1,1,0.019,1 PL:DP:SP:GT:GQ 227,29,0:15:0:1/1:99 +chr10 96495284 . G A 75.3 . DP=15;AF1=0.543;CI95=0.5,1;DP4=0,1,0,13;MQ=48;PV4=1,0.00016,0.23,1 PL:DP:SP:GT:GQ 105,0,8:14:0:0/1:11 +chr10 96541616 . G A 8.44 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 96580202 . C G 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:DP:SP:GT:GQ 138,15,0:5:0:1/1:75 +chr10 96587409 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 96609865 . T G 3.41 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr10 96611150 . a aAC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 96665860 . T A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,37:2:0:0/1:35 +chr10 96698809 . G C 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=41 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 96749262 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 96757278 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 96769513 . G C 5.46 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=5,1,2,0;MQ=49;PV4=1,0.036,0.00012,0.14 PL:DP:SP:GT:GQ 34,0,183:8:0:0/1:37 +chr10 96796861 . G A 6.79 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 96798548 . C T 22 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 96798685 . C A 6.24 . DP=2;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,16:2:0:0/1:19 +chr10 96827118 . AT ATT 89.1 . INDEL;DP=18;AF1=0.5939;CI95=0.5,1;DP4=0,2,0,14;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 126,0,5:16:0:0/1:7 +chr10 96827119 . TAAAAAAA TAAAAAAAA 6.63 . INDEL;DP=17;AF1=1;CI95=1,1;DP4=0,2,0,14;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 46,19,0:16:0:1/1:76 +chr10 96827178 . T C 54.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 87,18,0:6:0:1/1:90 +chr10 96827490 . TT TTACT 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 96856341 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96859006 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 96870188 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96871571 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 96887940 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 96893305 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96904403 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96931227 . A AAG 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,1,1,0.076 PL:DP:SP:GT:GQ 38,0,108:4:0:0/1:41 +chr10 96945206 . AAA AAATAA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 96963832 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96965299 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96985661 . c cTTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97005819 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97012343 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97053784 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97058864 . aaga aAGATGACTAGaga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97080060 . T TCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97090997 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 97096639 . A T 37 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=1,13,8,0;MQ=48;PV4=2.8e-05,0.00047,0.0066,1 PL:DP:SP:GT:GQ 67,0,237:22:46:0/1:70 +chr10 97106946 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 97121904 . CTGGAAGA C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97127462 . C A 17.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 97141253 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 97141523 . G A 99 . DP=36;AF1=1;CI95=1,1;DP4=0,0,6,26;MQ=49 PL:DP:SP:GT:GQ 235,96,0:32:0:1/1:99 +chr10 97156908 . T C 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,1,5,0;MQ=49;PV4=0.44,2.2e-07,0,1 PL:DP:SP:GT:GQ 55,0,151:9:0:0/1:58 +chr10 97160022 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 97165811 . G A 24.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 57,18,0:6:0:1/1:90 +chr10 97175445 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97197395 . G T 17.1 . DP=9;AF1=0.5032;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.037,1,1 PL:DP:SP:GT:GQ 47,0,19:4:0:0/1:22 +chr10 97199992 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97228343 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 97230189 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 97232604 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97242781 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97251429 . aag aAGTGAAGag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97270387 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 97294590 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97327823 . CC CCTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97338929 . tca t 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 97354914 . C T 75 . DP=16;AF1=1;CI95=1,1;DP4=1,0,3,9;MQ=19;PV4=0.31,1,1,1 PL:DP:SP:GT:GQ 108,28,0:13:0:1/1:99 +chr10 97361602 . T TCCC 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 97372277 . A AGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97372972 . tt tTGCAAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97403571 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97405584 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97411445 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 97440328 . G A 19.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,3;MQ=48;PV4=1,0.4,0.0097,1 PL:DP:SP:GT:GQ 49,0,61:6:0:0/1:52 +chr10 97447373 . A T 59 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,12,1,8;MQ=49;PV4=1,6.8e-05,0.022,1 PL:DP:SP:GT:GQ 89,0,234:22:0:0/1:92 +chr10 97455562 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 97483580 . g gCGAAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97518862 . TA TAGGGCGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97521769 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 97580336 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 97605057 . C G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=15,1,14,0;MQ=47;PV4=1,9.9e-10,0,1 PL:DP:SP:GT:GQ 188,0,255:30:0:0/1:99 +chr10 97606304 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 97606368 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97607165 . G A 75 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=18,4,14,0;MQ=48;PV4=0.14,5.4e-08,2.1e-07,0.35 PL:DP:SP:GT:GQ 105,0,255:36:9:0/1:99 +chr10 97616787 . T TAG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 97648686 . G T 3.55 . DP=2;AF1=0.5011;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,23:2:0:0/1:25 +chr10 97664356 . A ACCGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97666753 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 97675527 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 97688261 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97698958 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97705988 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97716709 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97721664 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 97734151 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 97772253 . C T 24.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 57,15,0:5:0:1/1:75 +chr10 97800138 . GG GGGTGCGGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97816749 . C G 8.64 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=9,5,0,4;MQ=49;PV4=0.082,0.11,0.003,1 PL:DP:SP:GT:GQ 38,0,255:18:11:0/1:41 +chr10 97833026 . t tACACACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97851271 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 97891376 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 97913083 . T A 4.13 . DP=2;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,25:2:0:0/1:27 +chr10 97964261 . C G 65 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=48;PV4=1,0.26,1.4e-05,0.052 PL:DP:SP:GT:GQ 95,0,145:12:0:0/1:98 +chr10 97968020 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97975189 . A G,C 17.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 50,10,45,1,0,45:4:0:1/1:63 +chr10 97975189 . a aGCAGGTAT 7.49 . INDEL;DP=7;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr10 97987378 . G A 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,23;MQ=46;PV4=1,0.013,2e-13,1 PL:DP:SP:GT:GQ 200,0,201:36:0:0/1:99 +chr10 97991511 . T G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 97996679 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 98006798 . G C 14.2 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,4,2,1;MQ=47;PV4=0.46,7e-05,0.014,0.015 PL:DP:SP:GT:GQ 44,0,182:8:3:0/1:47 +chr10 98010335 . A AAGGTTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98037903 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 98080363 . T C 15.1 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=4,2,5,0;MQ=48;PV4=0.45,0.066,0.11,1 PL:DP:SP:GT:GQ 45,0,147:11:3:0/1:48 +chr10 98082385 . A G 27 . DP=9;AF1=0.5032;CI95=0.5,0.5;DP4=1,0,4,0;MQ=48;PV4=1,0.0099,0.063,0.38 PL:DP:SP:GT:GQ 57,0,19:5:0:0/1:22 +chr10 98084231 . A G 34.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 67,12,0:4:0:1/1:72 +chr10 98092426 . G A 9.52 . DP=26;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.0045,0.28,1 PL:DP:SP:GT:GQ 39,0,29:4:0:0/1:32 +chr10 98092427 . G A 38 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,7;MQ=48;PV4=1,0.069,0.023,1 PL:DP:SP:GT:GQ 68,0,127:15:0:0/1:71 +chr10 98095615 . G C 18.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,0.12,0.12,0.29 PL:DP:SP:GT:GQ 48,0,76:8:0:0/1:51 +chr10 98095794 . T C 7.77 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 98097171 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 98135125 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 98144312 . G A 99 . DP=42;AF1=1;CI95=1,1;DP4=0,0,36,0;MQ=49 PL:DP:SP:GT:GQ 150,108,0:36:0:1/1:99 +chr10 98154958 . G T 11.3 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=9,9,6,0;MQ=49;PV4=0.052,0.0016,0.00024,1 PL:DP:SP:GT:GQ 41,0,255:24:13:0/1:44 +chr10 98206310 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 98224897 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 98225862 . C CCTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98225867 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 98231732 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98236670 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 98240035 . A T 88 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=47;PV4=1,0.0013,3.6e-06,1 PL:DP:SP:GT:GQ 118,0,198:13:0:0/1:99 +chr10 98244084 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98281981 . A C 32.1 . DP=14;AF1=0.5129;CI95=0.5,0.5;DP4=2,0,5,0;MQ=48;PV4=1,1,0.044,1 PL:DP:SP:GT:GQ 62,0,13:7:0:0/1:16 +chr10 98320615 . C CGA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.012 PL:DP:SP:GT:GQ 38,0,93:4:0:0/1:41 +chr10 98345779 . AA AAAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98356496 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 98359367 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 98371919 . cc cCGTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98380115 . G C 8.64 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=4,4,4,0;MQ=48;PV4=0.21,0.11,0.11,0.38 PL:DP:SP:GT:GQ 38,0,174:12:7:0/1:41 +chr10 98380277 . C T 76.1 . DP=30;AF1=0.505;CI95=0.5,0.5;DP4=1,0,3,6;MQ=49;PV4=0.4,0.00077,0.27,1 PL:DP:SP:GT:GQ 106,0,17:10:0:0/1:20 +chr10 98380363 . A G 38.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 71,15,0:5:0:1/1:75 +chr10 98386558 . G A 53 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,5;MQ=50;PV4=0.17,0.061,0.18,1 PL:DP:SP:GT:GQ 83,0,37:9:8:0/1:40 +chr10 98410901 . A G 49.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 82,12,0:4:0:1/1:72 +chr10 98410947 . A C 49 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,7,0;MQ=46;PV4=1,0.32,0.072,1 PL:DP:SP:GT:GQ 79,0,38:10:0:0/1:41 +chr10 98419329 . TCT TCTGTAGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98423884 . aa aATTTTCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98442012 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 98442273 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98452503 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98452511 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 98453195 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98460693 . GT GTCAGTACTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98469507 . C A 29 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,2;MQ=47;PV4=1,0.00056,0.17,1 PL:DP:SP:GT:GQ 59,0,85:5:0:0/1:62 +chr10 98513256 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98529679 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98557950 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 98593737 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 98594084 . AT ATCTCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98609602 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 98611876 . a aCAAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98646713 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 98668862 . CA CATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98675571 . A C 20 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,2;MQ=47;PV4=0.49,0.06,0.097,1 PL:DP:SP:GT:GQ 50,0,124:7:3:0/1:53 +chr10 98679069 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 98682130 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 98711894 . A C 4.77 . DP=43;AF1=0.4999;CI95=0.5,0.5;DP4=4,18,6,0;MQ=49;PV4=0.00056,2.4e-05,1.5e-06,1 PL:DP:SP:GT:GQ 33,0,255:28:33:0/1:36 +chr10 98737843 . G A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,38:2:0:0/1:35 +chr10 98742750 . A C 27.1 . DP=30;AF1=0.508;CI95=0.5,0.5;DP4=0,1,1,3;MQ=49;PV4=1,0.13,0.3,1 PL:DP:SP:GT:GQ 57,0,15:5:0:0/1:18 +chr10 98743301 . A G 34 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,9;MQ=48;PV4=0.077,0.00025,0.38,1 PL:DP:SP:GT:GQ 64,0,101:13:11:0/1:67 +chr10 98764694 . G T 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 98780933 . T C 93.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,1,10,0;MQ=46;PV4=0.091,1,1,1 PL:DP:SP:GT:GQ 125,7,0:11:0:1/1:57 +chr10 98788847 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 98794189 . G C 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 98794191 . C T 6.02 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 98794644 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98808866 . C G 11.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 98814424 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 98819317 . A G 99 . DP=16;AF1=0.6243;CI95=0.5,1;DP4=0,2,0,9;MQ=46;PV4=1,1,0.0058,1 PL:DP:SP:GT:GQ 141,0,4:11:0:0/1:6 +chr10 98837001 . g gAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98863470 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 98865178 . C T 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr10 98866135 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98872508 . g gCCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98886317 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98896268 . TC TCTGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98897003 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 98900167 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 98905420 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98914332 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98923300 . G A 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 98932906 . A ACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98934463 . T C 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,32:2:0:0/1:31 +chr10 98947740 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98948423 . ATGTGCTG A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98952971 . a aGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98966768 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98985801 . CTTT CTTTTT 7.35 . INDEL;DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,32:2:0:0/1:35 +chr10 98987700 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98987712 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98989454 . A G 30.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 63,18,0:6:0:1/1:90 +chr10 99003613 . A C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 99003731 . A C 6.98 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=2,3,4,0;MQ=49;PV4=0.17,0.0099,0.13,0.46 PL:DP:SP:GT:GQ 36,0,151:9:8:0/1:39 +chr10 99019177 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,1,17,11;MQ=47;PV4=0.41,0.24,0.18,1 PL:DP:SP:GT:GQ 255,57,0:29:0:1/1:99 +chr10 99033689 . tcacaa t 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99069493 . G T 13.2 . DP=16;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,1,5;MQ=26;PV4=0.11,0.00019,0.3,0.16 PL:DP:SP:GT:GQ 43,0,32:8:10:0/1:35 +chr10 99111009 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99117010 . T G 3.01 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.26,0,1 PL:DP:SP:GT:GQ 30,0,51:4:0:0/1:33 +chr10 99124699 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 99125949 . C T 11.1 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 99126974 . A G 6.2 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 99129985 . G A 9.52 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 39,0,43:4:0:0/1:41 +chr10 99130754 . CGA CGATCAGA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr10 99143125 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 99151046 . T TTGCCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99160965 . A G 3.01 . DP=55;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,3;MQ=50;PV4=0.4,0.044,0.25,1 PL:DP:SP:GT:GQ 30,0,34:5:0:0/1:32 +chr10 99184823 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 99184877 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99196210 . G C 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=3,6,3,0;MQ=49;PV4=0.18,0.13,0.0069,0.048 PL:DP:SP:GT:GQ 31,0,211:12:7:0/1:34 +chr10 99196251 . T G 21 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=20,2,0,10;MQ=49;PV4=1e-06,4.3e-08,0.00063,0.016 PL:DP:SP:GT:GQ 51,0,255:32:60:0/1:54 +chr10 99199272 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99199276 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99205686 . A G 49.3 . DP=29;AF1=0.5336;CI95=0.5,1;DP4=1,0,3,3;MQ=49;PV4=1,0.02,0.46,0.28 PL:DP:SP:GT:GQ 79,0,9:7:0:0/1:12 +chr10 99214609 . T G 4.13 . DP=21;AF1=0.4998;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.11,0.013,1 PL:DP:SP:GT:GQ 32,0,141:11:0:0/1:35 +chr10 99235990 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 99274472 . G GTGGGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99283518 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99309002 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 99337572 . G A 62.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 95,12,0:4:0:1/1:72 +chr10 99338872 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 99340531 . A AAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 99344668 . C A 18.1 . DP=10;AF1=0.5016;CI95=0.5,0.5;DP4=1,1,0,3;MQ=48;PV4=0.4,1,1,0.39 PL:DP:SP:GT:GQ 48,0,22:5:0:0/1:25 +chr10 99350340 . T C 39 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=3,12,0,8;MQ=49;PV4=0.53,0.015,2.4e-05,1 PL:DP:SP:GT:GQ 69,0,255:23:3:0/1:72 +chr10 99376675 . A G 6.2 . DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.26,0.33,0.45 PL:DP:SP:GT:GQ 35,0,28:3:0:0/1:30 +chr10 99379321 . T C 28 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,1,7,0;MQ=50;PV4=1,4.9e-08,0.11,1 PL:DP:SP:GT:GQ 58,0,220:15:0:0/1:61 +chr10 99407770 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99407773 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99413904 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99422565 . T C 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 30,0,114:4:0:0/1:33 +chr10 99422648 . A G 19.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,8,0;MQ=50;PV4=1,4.3e-11,0.15,0.47 PL:DP:SP:GT:GQ 49,0,204:17:0:0/1:52 +chr10 99433297 . C T 67 . DP=24;AF1=1;CI95=1,1;DP4=1,0,14,0;MQ=49;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 100,27,0:15:0:1/1:99 +chr10 99437005 . AT ATGCTCAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99439541 . G C 6.02 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 99507810 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99551996 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99566797 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 99575080 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 99619094 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 99633104 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99639929 . A T 4.13 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=10,0,3,0;MQ=49;PV4=1,0.4,0.00026,1 PL:DP:SP:GT:GQ 32,0,129:13:0:0/1:35 +chr10 99658617 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 99663112 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 99681626 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 99682981 . T C 59 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=11,5,11,0;MQ=49;PV4=0.06,1.2e-06,0.0071,1 PL:DP:SP:GT:GQ 89,0,255:27:12:0/1:92 +chr10 99683281 . G GCA 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 38,0,107:4:0:0/1:41 +chr10 99688992 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99697509 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99701474 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99701986 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99725773 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 99740450 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 99753457 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 99788728 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99809014 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 99823789 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 99835102 . tc tCTGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99848203 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99853192 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 99858009 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 99866853 . A ACAGGTGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99874344 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99886732 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99935126 . G C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 99969568 . A G 11.3 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=20,23,8,10;MQ=50;PV4=1,1.1e-21,0.062,1 PL:DP:SP:GT:GQ 41,0,255:61:0:0/1:44 +chr10 99991408 . A G 99 . DP=43;AF1=1;CI95=1,1;DP4=1,1,11,25;MQ=46;PV4=0.54,1,0.052,1 PL:DP:SP:GT:GQ 255,66,0:38:3:1/1:99 +chr10 100003785 . T C 22 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,4,0;MQ=49;PV4=1,0.037,2.9e-05,0.37 PL:DP:SP:GT:GQ 52,0,185:13:0:0/1:55 +chr10 100012161 . C A 5.46 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=7,2,0,3;MQ=49;PV4=0.045,0.032,0.0076,0.29 PL:DP:SP:GT:GQ 34,0,221:12:13:0/1:37 +chr10 100013244 . A C 10.4 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=7,0,4,0;MQ=49;PV4=1,0.0054,0.22,1 PL:DP:SP:GT:GQ 40,0,161:11:0:0/1:43 +chr10 100016608 . T G 10.4 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=6,3,0,4;MQ=49;PV4=0.07,0.028,0.011,1 PL:DP:SP:GT:GQ 40,0,218:13:12:0/1:43 +chr10 100017453 . T G 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=5,8,1,15;MQ=47;PV4=0.064,0.0009,4.6e-08,1 PL:DP:SP:GT:GQ 187,0,255:29:12:0/1:99 +chr10 100021548 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 100079153 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 100082945 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 100104215 . AAG AAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100104508 . T A 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 100144782 . C T 58 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,4,2,3;MQ=48;PV4=1,7.6e-06,0.00049,0.27 PL:DP:SP:GT:GQ 88,0,248:12:0:0/1:91 +chr10 100146895 . T C 37 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=48;PV4=1,0.0012,0.0087,1 PL:DP:SP:GT:GQ 67,0,150:9:0:0/1:70 +chr10 100147097 . G A 24 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,5;MQ=50;PV4=1,8.6e-09,0.095,1 PL:DP:SP:GT:GQ 54,0,210:14:0:0/1:57 +chr10 100148176 . A G 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=3,10,3,14;MQ=49;PV4=1,3.3e-08,0.007,1 PL:DP:SP:GT:GQ 149,0,255:30:0:0/1:99 +chr10 100148260 . A T 27 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,4;MQ=47;PV4=1,0.093,0.0021,0.31 PL:DP:SP:GT:GQ 57,0,166:11:0:0/1:60 +chr10 100155110 . C G 3.54 . DP=29;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,0,4;MQ=48;PV4=1,0.2,0.36,1 PL:DP:SP:GT:GQ 31,0,110:10:0:0/1:34 +chr10 100157338 . CA C 23.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,4;MQ=50;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 61,0,143:12:0:0/1:64 +chr10 100167396 . G A 21 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=11,14,1,11;MQ=50;PV4=0.058,1.9e-10,0.013,1 PL:DP:SP:GT:GQ 51,0,255:37:12:0/1:54 +chr10 100167495 . G A 67 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 99,9,0:3:0:1/1:63 +chr10 100174989 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100183774 . A G 60.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 93,15,0:5:0:1/1:75 +chr10 100219314 . G A 64 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=23,11,11,1;MQ=49;PV4=0.14,1.1e-15,9.2e-14,1 PL:DP:SP:GT:GQ 94,0,255:46:9:0/1:97 +chr10 100229641 . A T 4.78 . DP=2;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,20:2:0:0/1:23 +chr10 100229670 . T TAGGCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100230852 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 100240022 . gt gTCCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100242345 . C G 73.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 106,18,0:6:0:1/1:90 +chr10 100247095 . a aTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100251773 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100253111 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 100256205 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100362640 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 100369978 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 100381435 . g gTTGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100401745 . T C 23 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr10 100509743 . aa aAGTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100588369 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100591101 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 100646329 . TTAGGA T 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100664376 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 100712131 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 100717785 . TT TTTGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100758893 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 100759839 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100772697 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 100778378 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 100783033 . gg gGTCACTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100792555 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100841248 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 100856730 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 100885875 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 100894428 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 100919857 . c cTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100973556 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101064822 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 101080045 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101080355 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 101166544 . C T 42 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=11,8,8,2;MQ=49;PV4=0.41,4e-07,0.13,1 PL:DP:SP:GT:GQ 72,0,255:29:4:0/1:75 +chr10 101209215 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101220557 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101224448 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 101230320 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101234941 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 101240253 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101282474 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 101291087 . C CGGGGGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101297382 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101329142 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 101330035 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101330039 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 101333169 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101338795 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101351097 . TG TGGGGCAGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101372411 . T C 73.1 . DP=20;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=47 PL:DP:SP:GT:GQ 106,21,0:7:0:1/1:84 +chr10 101372427 . A G 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,3;MQ=47;PV4=1,1,0.0043,1 PL:DP:SP:GT:GQ 37,0,57:8:0:0/1:40 +chr10 101379845 . C A 4.77 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,0,3;MQ=48;PV4=1,0.22,0.27,1 PL:DP:SP:GT:GQ 33,0,102:8:0:0/1:36 +chr10 101379895 . C T 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,0.44,0.042,1 PL:DP:SP:GT:GQ 34,0,74:3:0:0/1:37 +chr10 101451259 . T C 23 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=2,4,0,5;MQ=48;PV4=0.45,0.022,0.17,0.37 PL:DP:SP:GT:GQ 53,0,143:11:3:0/1:56 +chr10 101457155 . A G 6.2 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,43:2:0:0/1:37 +chr10 101466569 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 101474499 . T C 3.01 . DP=17;AF1=0.4997;CI95=0.5,0.5;DP4=2,9,0,4;MQ=50;PV4=1,4.6e-05,3.4e-07,0.49 PL:DP:SP:GT:GQ 30,0,255:15:0:0/1:33 +chr10 101478000 . TCC TCCC 65 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 105,12,0:4:0:1/1:72 +chr10 101485984 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101495027 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 101525391 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 101542955 . A AATTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101543159 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 101544447 . A T 93 . DP=69;AF1=1;CI95=1,1;DP4=0,0,11,1;MQ=48 PL:DP:SP:GT:GQ 126,36,0:12:0:1/1:99 +chr10 101553058 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101553743 . A C 10.4 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,5;MQ=49;PV4=1,0.11,0.23,1 PL:DP:SP:GT:GQ 40,0,97:14:0:0/1:43 +chr10 101557046 . C G 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,1,2;MQ=47;PV4=1,0.17,1,0.1 PL:DP:SP:GT:GQ 36,0,57:6:0:0/1:39 +chr10 101589897 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101591944 . T C 98 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=48 PL:DP:SP:GT:GQ 131,36,0:12:0:1/1:99 +chr10 101595816 . G T 5.46 . DP=31;AF1=0.4999;CI95=0.5,0.5;DP4=10,0,5,0;MQ=50;PV4=1,0.084,9.3e-05,1 PL:DP:SP:GT:GQ 34,0,102:15:0:0/1:37 +chr10 101596043 . A C 37 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=6,9,0,11;MQ=49;PV4=0.024,0.0029,0.0014,1 PL:DP:SP:GT:GQ 67,0,255:26:16:0/1:70 +chr10 101601301 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101603963 . A G 39 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 71,9,0:3:0:1/1:63 +chr10 101615336 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 101635954 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101637609 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101638422 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101639905 . T A 60 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,11;MQ=48;PV4=1,0.19,0.12,1 PL:DP:SP:GT:GQ 90,0,75:17:0:0/1:78 +chr10 101644064 . ACAGTCAGTCA ACAGTCA 39.5 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=50;PV4=1,0.046,1,1 PL:DP:SP:GT:GQ 77,0,77:5:0:0/1:77 +chr10 101645498 . T C 98 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=10,1,6,0;MQ=47;PV4=1,0.23,3.4e-09,1 PL:DP:SP:GT:GQ 128,0,251:17:0:0/1:99 +chr10 101645534 . G A 4.13 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=6,1,3,0;MQ=49;PV4=1,0.0014,0.035,0.23 PL:DP:SP:GT:GQ 32,0,212:10:0:0/1:35 +chr10 101648801 . AA AAGTCCCTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101654696 . T C 75 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=13,4,10,1;MQ=49;PV4=0.62,7.7e-10,1.2e-08,0.16 PL:DP:SP:GT:GQ 105,0,255:28:2:0/1:99 +chr10 101658585 . T C 27 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,6;MQ=49;PV4=1,0.022,0.0066,1 PL:DP:SP:GT:GQ 57,0,122:13:0:0/1:60 +chr10 101665254 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 101671212 . c cAAACGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101691423 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 101691977 . C CACTTCCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101698392 . T TCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101708908 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 101716484 . G A 5.46 . DP=57;AF1=0.4999;CI95=0.5,0.5;DP4=14,16,0,8;MQ=49;PV4=0.017,1.1e-11,0.00032,1 PL:DP:SP:GT:GQ 34,0,255:38:18:0/1:37 +chr10 101728857 . T A 3.54 . DP=30;AF1=0.4998;CI95=0.5,0.5;DP4=13,1,1,3;MQ=49;PV4=0.019,0.0053,3.1e-05,1 PL:DP:SP:GT:GQ 31,0,250:18:17:0/1:34 +chr10 101744823 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 101769156 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101769165 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101793715 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101802126 . G C 4.77 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=47;PV4=1,0.31,0,1 PL:DP:SP:GT:GQ 33,0,78:3:0:0/1:36 +chr10 101802187 . G C 4.23 . DP=8;AF1=0.5205;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,1,0.26,0.009 PL:DP:SP:GT:GQ 32,0,11:4:0:0/1:14 +chr10 101808460 . A G 25 . DP=17;AF1=0.6671;CI95=0.5,1;DP4=1,0,6,0;MQ=49;PV4=1,0.28,0.13,0.18 PL:DP:SP:GT:GQ 54,0,3:7:0:0/1:5 +chr10 101814302 . A G 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.0066,0.048,1 PL:DP:SP:GT:GQ 30,0,70:4:0:0/1:33 +chr10 101824294 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101841430 . TT TTGT 7.35 . INDEL;DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,36:2:0:0/1:38 +chr10 101847768 . g gTTACC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101874506 . T C 68.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=47 PL:DP:SP:GT:GQ 101,15,0:5:0:1/1:75 +chr10 101882858 . TAT TATCCACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101883039 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 101889864 . a aGACTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101905077 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101914811 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101951173 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 101959794 . A T 15.1 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=5,10,0,7;MQ=50;PV4=0.13,0.016,0.0054,1 PL:DP:SP:GT:GQ 45,0,255:22:9:0/1:48 +chr10 101981904 . T C 7.81 . DP=11;AF1=0.5019;CI95=0.5,0.5;DP4=1,0,0,3;MQ=49;PV4=0.25,0.072,0.24,0.2 PL:DP:SP:GT:GQ 37,0,21:4:0:0/1:24 +chr10 101995473 . C G 4.77 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,0,2;MQ=47;PV4=1,1,0.16,0.33 PL:DP:SP:GT:GQ 33,0,65:6:0:0/1:36 +chr10 101995813 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 101996787 . C G 78 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,9;MQ=47;PV4=1,0.44,0.014,1 PL:DP:SP:GT:GQ 108,0,52:13:0:0/1:55 +chr10 102000394 . T C 7.06 . DP=2;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,13:2:0:0/1:16 +chr10 102001870 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 102006625 . G A 41 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=4,10,5,5;MQ=50;PV4=0.4,1.7e-08,0.066,1 PL:DP:SP:GT:GQ 71,0,255:24:4:0/1:74 +chr10 102006681 . C T 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=3,10,3,7;MQ=48;PV4=1,1.7e-06,3.3e-06,1 PL:DP:SP:GT:GQ 145,0,255:23:0:0/1:99 +chr10 102010127 . T C 3.05 . DP=12;AF1=0.5078;CI95=0.5,0.5;DP4=0,1,0,3;MQ=47;PV4=1,0,0.24,0.061 PL:DP:SP:GT:GQ 30,0,15:4:0:0/1:18 +chr10 102013280 . T G 4.13 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=5,1,0,3;MQ=50;PV4=0.048,0.039,0.085,0.42 PL:DP:SP:GT:GQ 32,0,151:9:13:0/1:35 +chr10 102013380 . T G 6.2 . DP=6;AF1=0.5009;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 35,0,24:4:0:0/1:27 +chr10 102016044 . C T 49 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,4,4,2;MQ=48;PV4=0.59,0.0088,0.17,1 PL:DP:SP:GT:GQ 79,0,196:13:2:0/1:82 +chr10 102048208 . G T 7.8 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,3,1,3;MQ=50;PV4=1,0.00065,0.15,1 PL:DP:SP:GT:GQ 37,0,170:9:0:0/1:40 +chr10 102050242 . C A 52 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=10,4,1,6;MQ=49;PV4=0.024,5e-06,0.00011,0.29 PL:DP:SP:GT:GQ 82,0,255:21:16:0/1:85 +chr10 102056163 . A T 4.77 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=49;PV4=1,0.0013,0.092,1 PL:DP:SP:GT:GQ 33,0,88:4:0:0/1:36 +chr10 102058191 . T TAC 3.25 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 102059329 . G C 29 . DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,2;MQ=47;PV4=1,0.0094,0.41,1 PL:DP:SP:GT:GQ 59,0,35:4:0:0/1:38 +chr10 102072923 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102089663 . C T 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=9,3,9,5;MQ=49;PV4=0.68,6.1e-09,0.006,1 PL:DP:SP:GT:GQ 149,0,255:26:2:0/1:99 +chr10 102114201 . G A 6.2 . DP=28;AF1=0.4999;CI95=0.5,0.5;DP4=4,2,3,0;MQ=47;PV4=0.5,0.087,0.34,0.37 PL:DP:SP:GT:GQ 35,0,145:9:3:0/1:38 +chr10 102114207 . T A 27 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=10,2,6,0;MQ=48;PV4=0.53,0.03,0.032,0.00097 PL:DP:SP:GT:GQ 57,0,215:18:3:0/1:60 +chr10 102116403 . T C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,38:2:0:0/1:34 +chr10 102130389 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102154214 . c cCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102180530 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102229544 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102240673 . GT GTAT 18.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 56,0,43:4:0:0/1:46 +chr10 102249563 . C G 3.01 . DP=14;AF1=0.4997;CI95=0.5,0.5;DP4=0,4,0,3;MQ=50;PV4=1,0.12,0.14,0.24 PL:DP:SP:GT:GQ 30,0,72:7:0:0/1:33 +chr10 102250530 . T TCCGACCTTGTCAA 99 . INDEL;DP=32;AF1=1;CI95=1,1;DP4=0,0,19,10;MQ=50 PL:DP:SP:GT:GQ 228,87,0:29:0:1/1:99 +chr10 102257370 . T A 13.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.0043,0.33,0.062 PL:DP:SP:GT:GQ 43,0,38:4:0:0/1:40 +chr10 102267312 . C G 43 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,6,0,6;MQ=48;PV4=0.23,0.24,0.0085,1 PL:DP:SP:GT:GQ 73,0,167:15:6:0/1:76 +chr10 102287348 . G C 6.98 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,41:2:0:0/1:38 +chr10 102289041 . G C 3.02 . DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102305540 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 102307016 . C G 27 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,0.39,0.0018,0.28 PL:DP:SP:GT:GQ 57,0,87:7:0:0/1:60 +chr10 102330252 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102349209 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102358874 . GC GCGTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102361889 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102362454 . C CTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102380133 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 102388269 . TTT TTTGATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102391187 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 102395490 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 102412664 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102420816 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102427989 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 102430326 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102448534 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 102476434 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102488785 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 102495039 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 102505136 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 102520859 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102527306 . TCC T 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 102544780 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102550018 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 102550566 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102572777 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102624018 . atgtgtg atgtg 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 102640077 . T TACGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102661743 . A AAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 102679994 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 102684380 . C A 99 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=5,19,7,20;MQ=49;PV4=0.75,7.8e-16,4.1e-06,1 PL:DP:SP:GT:GQ 202,0,255:51:1:0/1:99 +chr10 102700560 . c cAGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102707623 . T C 10.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 102708343 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102724959 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102739841 . G A 6.2 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.017,0.33,1 PL:DP:SP:GT:GQ 35,0,34:4:0:0/1:34 +chr10 102741381 . T G 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 102744331 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 102753424 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102761293 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102762256 . C T 17.1 . DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,1;MQ=47;PV4=1,0.072,0,1 PL:DP:SP:GT:GQ 47,0,34:3:0:0/1:37 +chr10 102764081 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 102774720 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102778152 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102780312 . G T 76 . DP=10;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 109,27,0:9:0:1/1:99 +chr10 102780354 . TGGG TGG 61.5 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=7,1,8,0;MQ=50;PV4=1,0.076,1,1 PL:DP:SP:GT:GQ 99,0,125:16:0:0/1:99 +chr10 102780358 . AG A 23.5 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=7,1,4,0;MQ=50;PV4=1,0.0036,1,0.17 PL:DP:SP:GT:GQ 61,0,170:12:0:0/1:64 +chr10 102780435 . CC CCAGCAAC 5.08 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,53:3:0:0/1:44 +chr10 102783678 . T C 10.2 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 102788621 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102791684 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102795203 . G T 9.31 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 102796441 . T G 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 102796952 . C A 29 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=5,4,0,5;MQ=49;PV4=0.086,0.073,0.0025,1 PL:DP:SP:GT:GQ 59,0,203:14:11:0/1:62 +chr10 102798346 . T C 34 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=14,0,8,0;MQ=49;PV4=1,1.4e-09,0.01,1 PL:DP:SP:GT:GQ 64,0,233:22:0:0/1:67 +chr10 102807720 . AG AGTCTCTG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 102815061 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102823925 . G A 4.14 . DP=4;AF1=0.5024;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.15,0.33,0.072 PL:DP:SP:GT:GQ 32,0,20:3:0:0/1:23 +chr10 102824694 . CA CCCAAAAA 5.08 . INDEL;DP=13;AF1=0.5008;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,25:3:0:0/1:28 +chr10 102835066 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102836089 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102839546 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102839553 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102848581 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102848826 . A T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 102867522 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 102894006 . G A 8.64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.028,0.018,1 PL:DP:SP:GT:GQ 38,0,66:5:0:0/1:41 +chr10 102894452 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102896505 . G A 6.98 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,0,2;MQ=44;PV4=0.33,0.21,0.15,0.24 PL:DP:SP:GT:GQ 36,0,62:4:5:0/1:39 +chr10 102902105 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102906796 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102916942 . TGAC T 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 102929239 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102935820 . GGT G 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 102948760 . a aCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 102950976 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102994616 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103028462 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103066975 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 103079605 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 103099852 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103147385 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 103209827 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 103221870 . CAGGAGGA CAGGA 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=50 PL:DP:SP:GT:GQ 252,39,0:13:0:1/1:99 +chr10 103251241 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103281634 . C G 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=49 PL:DP:SP:GT:GQ 132,51,0:17:0:1/1:99 +chr10 103294568 . T G 17.1 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=5,16,4,4;MQ=49;PV4=0.21,6.1e-05,0.0005,1 PL:DP:SP:GT:GQ 47,0,255:29:7:0/1:50 +chr10 103340168 . C G 24 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=47;PV4=1,1,0.19,0.14 PL:DP:SP:GT:GQ 54,0,83:7:0:0/1:57 +chr10 103343219 . T C 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,0.028,0.23,1 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr10 103346533 . a aAACTAGAGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 103369616 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 103394425 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 103401310 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103411864 . T G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103416862 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 103419306 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 103424712 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 103432592 . A C 37.2 . DP=16;AF1=0.5207;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,0.016,0.031,0.11 PL:DP:SP:GT:GQ 67,0,11:6:0:0/1:14 +chr10 103463276 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103501939 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 103525164 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103541362 . A G 13.2 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,0.063,8.2e-06,1 PL:DP:SP:GT:GQ 43,0,128:6:0:0/1:46 +chr10 103541948 . C T 8.64 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,0.35,1,1 PL:DP:SP:GT:GQ 38,0,48:4:0:0/1:41 +chr10 103552758 . ATG ATGTG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103567720 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 103570138 . TA TACAA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.015 PL:DP:SP:GT:GQ 38,0,90:4:0:0/1:41 +chr10 103572781 . G A 3.54 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.24,1.6e-05,0.071 PL:DP:SP:GT:GQ 31,0,109:10:0:0/1:34 +chr10 103577872 . C CTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103586903 . GG GGAGGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103656563 . GA GATACAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103698054 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 103737351 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 103740829 . tg tGTGAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103755985 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103771440 . T G 15.1 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.04,0.33,0.3 PL:DP:SP:GT:GQ 45,0,30:4:0:0/1:33 +chr10 103799758 . C T 6.2 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,0.11,0.029,1 PL:DP:SP:GT:GQ 35,0,68:4:0:0/1:38 +chr10 103807653 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103807682 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103813780 . AC ACGTACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103826794 . C T 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,2;MQ=49;PV4=0.49,0.15,0.031,1 PL:DP:SP:GT:GQ 41,0,87:7:3:0/1:44 +chr10 103834070 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103902902 . C T,G 15.3 . DP=9;AF1=0.7303;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 47,3,39,5,0,47:5:0:0/1:3 +chr10 103908042 . A G 12.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.37,0.12,1 PL:DP:SP:GT:GQ 42,0,48:6:0:0/1:44 +chr10 103909144 . C T 5.29 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 103988053 . C G 3.02 . DP=3;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.12,0.33,0.23 PL:DP:SP:GT:GQ 30,0,25:3:0:0/1:27 +chr10 103990215 . G T 6.26 . DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,14:2:0:0/1:17 +chr10 103997357 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104000307 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 104000317 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104028486 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 104038149 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 104095232 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104106192 . cta c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 104125644 . A G 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 104128954 . T A 59 . DP=47;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 92,24,0:8:0:1/1:96 +chr10 104129610 . T G 37 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=9,0,0,8;MQ=49;PV4=4.1e-05,0.0014,8.6e-07,1 PL:DP:SP:GT:GQ 67,0,178:17:44:0/1:70 +chr10 104136469 . T C 88.5 . DP=49;AF1=1;CI95=0.5,1;DP4=0,1,2,6;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 121,12,0:9:0:1/1:72 +chr10 104139130 . C T 13.2 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=2,6,0,6;MQ=49;PV4=0.47,0.092,0.015,0.33 PL:DP:SP:GT:GQ 43,0,151:14:3:0/1:46 +chr10 104139504 . A G 10.4 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=49;PV4=0.4,0.12,0.11,1 PL:DP:SP:GT:GQ 40,0,58:5:0:0/1:43 +chr10 104157711 . T G 13.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,0;MQ=50;PV4=1,2.9e-06,1,1 PL:DP:SP:GT:GQ 43,0,151:10:0:0/1:46 +chr10 104160434 . A G 54.1 . DP=11;AF1=1;CI95=0.5,1;DP4=1,0,5,1;MQ=48;PV4=1,1,0.19,0.48 PL:DP:SP:GT:GQ 85,5,0:7:0:1/1:46 +chr10 104161967 . T C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 104163489 . G A 13.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr10 104194244 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 104216931 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104233277 . G A 16.1 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,0.071,1,1 PL:DP:SP:GT:GQ 46,0,37:8:0:0/1:39 +chr10 104233278 . G A 4.13 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,0.21,0.035,1 PL:DP:SP:GT:GQ 32,0,87:8:0:0/1:35 +chr10 104242761 . C CGCGGCCACTGGCCA 99 . INDEL;DP=21;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=50 PL:DP:SP:GT:GQ 233,51,0:17:0:1/1:99 +chr10 104268800 . G C 7.77 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 104268857 . GA GAA 25.5 . INDEL;DP=35;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 63,0,20:3:0:0/1:23 +chr10 104274861 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104292594 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104315277 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 104332548 . G C 4.16 . DP=5;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,2,0;MQ=40;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 32,0,16:3:0:0/1:19 +chr10 104352276 . G T 6.98 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,0.097,1,1 PL:DP:SP:GT:GQ 36,0,81:8:0:0/1:39 +chr10 104352278 . CCA CCATAGTCA 7.35 . INDEL;DP=12;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,27:2:0:0/1:30 +chr10 104352989 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104368069 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104375258 . G A 55.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 88,12,0:4:0:1/1:72 +chr10 104387015 . CTTTT CTTT 3.14 . INDEL;DP=51;AF1=0.6242;CI95=0.5,1;DP4=1,0,0,2;MQ=50;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 37,0,4:3:0:0/1:6 +chr10 104387019 . T C 4.53 . DP=46;AF1=0.5938;CI95=0.5,1;DP4=1,0,0,2;MQ=49;PV4=0.33,1,0.17,1 PL:DP:SP:GT:GQ 32,0,5:3:0:0/1:7 +chr10 104389932 . T G 3.02 . DP=9;AF1=0.5005;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,25:5:0:0/1:27 +chr10 104389935 . C T 9.52 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=46;PV4=1,1,0.092,1 PL:DP:SP:GT:GQ 39,0,38:4:0:0/1:38 +chr10 104395299 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104414396 . A C 3.66 . DP=5;AF1=0.5261;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 31,0,10:3:0:0/1:13 +chr10 104420715 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104421697 . G GATATATAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104445545 . AGG AG 99 . INDEL;DP=45;AF1=1;CI95=1,1;DP4=2,0,35,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 248,67,0:42:0:1/1:99 +chr10 104459078 . CTA C 3.25 . INDEL;DP=12;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 104459079 . TAA T 99 . INDEL;DP=11;AF1=1;CI95=1,1;DP4=0,0,9,1;MQ=50 PL:DP:SP:GT:GQ 240,30,0:10:0:1/1:99 +chr10 104462853 . A AATAGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104479331 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 104486304 . G C 54.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 87,18,0:6:0:1/1:90 +chr10 104486974 . C T 14.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr10 104489011 . G C 48.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=46 PL:DP:SP:GT:GQ 81,12,0:4:0:1/1:72 +chr10 104492707 . G C 32.1 . DP=31;AF1=0.5163;CI95=0.5,1;DP4=1,0,0,5;MQ=48;PV4=0.17,0.076,1,0.4 PL:DP:SP:GT:GQ 62,0,12:6:0:0/1:15 +chr10 104518242 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 104538829 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 104559658 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104560442 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104572276 . A G 85 . DP=24;AF1=1;CI95=1,1;DP4=0,0,18,1;MQ=49 PL:DP:SP:GT:GQ 118,57,0:19:0:1/1:99 +chr10 104572963 . T C 47.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,1,0,5;MQ=48;PV4=1,1,0.15,0.37 PL:DP:SP:GT:GQ 78,5,0:6:0:1/1:46 +chr10 104573017 . G T 57.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 90,15,0:5:0:1/1:75 +chr10 104577238 . GC GCGCATTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104589146 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104590965 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104591236 . G T 14.2 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,36:6:0:0/1:38 +chr10 104593829 . TCGT TCGTGCGT 3.25 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,90:4:0:0/1:41 +chr10 104594828 . TG TACTCG 7.35 . INDEL;DP=7;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,27:2:0:0/1:30 +chr10 104605297 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 104605519 . A ANNN 7.69 . INDEL;DP=2;AF1=0.5554;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,7:2:0:0/1:10 +chr10 104605688 . AA AACAGA 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 41,0,57:3:0:0/1:44 +chr10 104629634 . T A 3.01 . DP=16;AF1=0.4997;CI95=0.5,0.5;DP4=1,6,0,3;MQ=49;PV4=1,0.052,0.11,0.18 PL:DP:SP:GT:GQ 30,0,160:10:0:0/1:33 +chr10 104630357 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 104640996 . GA GACACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104690828 . C T 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 104698684 . tg tGGCCCAAGACAg 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 104701307 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104706911 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104735862 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 104759296 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104770871 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 104788696 . c cTAAAAGTT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 104795292 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104801739 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 104821306 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 104841341 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 104845032 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104855781 . AAAAG A 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104857005 . A T 3.01 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,1,0.14,0.19 PL:DP:SP:GT:GQ 30,0,37:5:0:0/1:32 +chr10 104858289 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 104885047 . C G 20.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=39;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 50,0,39:4:0:0/1:42 +chr10 104919704 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104923137 . c cTATCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104928706 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104931747 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 104972244 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104974907 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104983386 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105005681 . TT TTGGT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105006048 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 105006255 . C T 6.98 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=47;PV4=1,1,0.014,1 PL:DP:SP:GT:GQ 36,0,56:5:0:0/1:39 +chr10 105038817 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 105052901 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105082904 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 105097354 . C CGTCAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105110262 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 105128504 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105158281 . T G 50 . DP=24;AF1=0.501;CI95=0.5,0.5;DP4=0,2,0,8;MQ=48;PV4=1,0.024,0.4,1 PL:DP:SP:GT:GQ 80,0,24:10:0:0/1:27 +chr10 105176179 . T C 60 . DP=33;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=49 PL:DP:SP:GT:GQ 93,30,0:10:0:1/1:99 +chr10 105200445 . GGCTGC GGCTGCTGC 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,67:4:0:0/1:41 +chr10 105215438 . A T 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=5,4,0,5;MQ=47;PV4=0.086,0.0059,0.026,0.21 PL:DP:SP:GT:GQ 41,0,238:14:11:0/1:44 +chr10 105215442 . C T 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=5,1,0,3;MQ=47;PV4=0.048,0.045,0.22,0.21 PL:DP:SP:GT:GQ 31,0,161:9:13:0/1:34 +chr10 105215444 . G A 3.01 . DP=21;AF1=0.4997;CI95=0.5,0.5;DP4=5,1,0,3;MQ=47;PV4=0.048,0.056,0.018,0.36 PL:DP:SP:GT:GQ 30,0,153:9:13:0/1:33 +chr10 105236493 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 105254565 . CGTGT CGT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 105257563 . AT ATTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105285099 . t tGCA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 105289519 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105324849 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 105340536 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 105344052 . AGCA AGCACTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105349816 . G A 4.13 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.037,0.0059,1 PL:DP:SP:GT:GQ 32,0,157:10:0:0/1:35 +chr10 105351164 . T TGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105362048 . G A 4.79 . DP=5;AF1=0.5039;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.33,0.41,1 PL:DP:SP:GT:GQ 33,0,18:3:0:0/1:21 +chr10 105362209 . T C 82.4 . DP=80;AF1=1;CI95=0.5,1;DP4=1,0,7,5;MQ=50;PV4=1,0.037,0.32,1 PL:DP:SP:GT:GQ 115,13,0:13:0:1/1:65 +chr10 105363289 . T C 99 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=4,6,8,5;MQ=48;PV4=0.41,1.5e-05,1.9e-06,0.27 PL:DP:SP:GT:GQ 184,0,255:23:4:0/1:99 +chr10 105378939 . T TTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105388763 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 105401099 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 105405531 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 105407716 . T C 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr10 105418292 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105428453 . CAGAGAGAGAGA CAGAGAGAGA 51.4 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 91,9,0:3:0:1/1:63 +chr10 105435827 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105440819 . GG GGAAAACTCAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 105460645 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 105464565 . a aCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105491271 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105495612 . T C 34 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 66,9,0:3:0:1/1:63 +chr10 105508436 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105522641 . CA CATGAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105539350 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105547124 . c cCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105565737 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105580807 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105586215 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 105600033 . G GTC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 105604731 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 105652623 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105657316 . G C 49.1 . DP=44;AF1=0.5064;CI95=0.5,0.5;DP4=1,1,0,13;MQ=49;PV4=0.13,0.027,0.14,1 PL:DP:SP:GT:GQ 79,0,16:15:0:0/1:19 +chr10 105658588 . G C 52 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=12,1,9,0;MQ=49;PV4=1,1.7e-08,2e-06,1 PL:DP:SP:GT:GQ 82,0,255:22:0:0/1:85 +chr10 105659826 . T C 64.1 . DP=42;AF1=0.5102;CI95=0.5,0.5;DP4=1,2,26,1;MQ=48;PV4=0.02,0.00088,0.18,1 PL:DP:SP:GT:GQ 94,0,14:30:17:0/1:17 +chr10 105727656 . AAGAG AAG 99 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,7,2,11;MQ=50;PV4=0.52,1,1,1 PL:DP:SP:GT:GQ 255,0,146:20:3:0/1:99 +chr10 105745515 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105752714 . G GGAC 3.25 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.24 PL:DP:SP:GT:GQ 38,0,99:4:0:0/1:41 +chr10 105758670 . A G 47 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=6,1,5,0;MQ=48;PV4=1,0.015,0.0082,1 PL:DP:SP:GT:GQ 77,0,186:12:0:0/1:80 +chr10 105759605 . TGT TGTAAGGT 7.35 . INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr10 105761436 . T G 61.1 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 94,21,0:7:0:1/1:84 +chr10 105761436 . TT TTCT 12.7 . INDEL;DP=13;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105762429 . C G 33 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,4;MQ=49;PV4=0.43,0.18,0.039,1 PL:DP:SP:GT:GQ 63,0,105:8:4:0/1:66 +chr10 105765298 . CTA CTAGATA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.48 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 105777481 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 105786239 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105793173 . T G 99 . DP=27;AF1=1;CI95=1,1;DP4=0,1,4,17;MQ=49;PV4=1,0.074,1,1 PL:DP:SP:GT:GQ 161,41,0:22:0:1/1:99 +chr10 105796399 . G C 19 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 105796449 . A G 33.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr10 105796738 . A C 20.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 105796819 . A G 41.5 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=49 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr10 105797378 . G A 52 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,0;MQ=47;PV4=1,0.27,0.1,1 PL:DP:SP:GT:GQ 82,0,37:8:0:0/1:40 +chr10 105798342 . C A 3.15 . DP=7;AF1=0.5333;CI95=0.5,1;DP4=0,1,0,2;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,9:3:0:0/1:12 +chr10 105798872 . T C 34.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=50 PL:DP:SP:GT:GQ 67,18,0:6:0:1/1:90 +chr10 105799216 . G T 8.7 . DP=26;AF1=0.508;CI95=0.5,0.5;DP4=1,0,0,3;MQ=50;PV4=0.25,0.087,0.33,1 PL:DP:SP:GT:GQ 38,0,15:4:0:0/1:18 +chr10 105799825 . G A 31 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,6;MQ=49;PV4=1,0.039,0.031,1 PL:DP:SP:GT:GQ 61,0,76:11:0:0/1:64 +chr10 105801221 . C A 10.4 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,3,0;MQ=49;PV4=0.018,0.18,0.007,1 PL:DP:SP:GT:GQ 40,0,104:8:17:0/1:43 +chr10 105803680 . C A 25 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=48;PV4=1,0.061,0.0052,1 PL:DP:SP:GT:GQ 55,0,110:11:0:0/1:58 +chr10 105805436 . G A 18 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 105805484 . A G 28 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=48;PV4=1,0.096,0.014,1 PL:DP:SP:GT:GQ 58,0,94:8:0:0/1:61 +chr10 105810400 . T C 4.77 . DP=52;AF1=0.4999;CI95=0.5,0.5;DP4=7,18,2,5;MQ=49;PV4=1,9.2e-05,0.0002,1 PL:DP:SP:GT:GQ 33,0,255:32:0:0/1:36 +chr10 105814826 . C A 11.3 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,4;MQ=49;PV4=1,0.00075,0.031,0.09 PL:DP:SP:GT:GQ 41,0,183:12:0:0/1:44 +chr10 105816916 . C T 65 . DP=20;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 98,24,0:8:0:1/1:96 +chr10 105817043 . C T 5.51 . DP=32;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.14,0.33,0.23 PL:DP:SP:GT:GQ 34,0,15:4:0:0/1:18 +chr10 105817891 . G A 8.64 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=11,1,4,1;MQ=50;PV4=0.51,0.0038,0.39,1 PL:DP:SP:GT:GQ 38,0,235:17:3:0/1:41 +chr10 105824333 . G A 99 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=9,5,2,4;MQ=48;PV4=0.34,0.13,5.4e-09,0.43 PL:DP:SP:GT:GQ 152,0,255:20:5:0/1:99 +chr10 105833027 . T A 6.2 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,0,4;MQ=49;PV4=0.14,0.0017,0.053,1 PL:DP:SP:GT:GQ 35,0,102:8:8:0/1:38 +chr10 105848288 . T A 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 105857860 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 105864078 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105875609 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105875625 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105878489 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105883815 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105903161 . A T 3.54 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.016,0.25,1 PL:DP:SP:GT:GQ 31,0,39:5:0:0/1:33 +chr10 105911097 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 105927332 . A G 27 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,1,5,0;MQ=49;PV4=1,0.25,0.0075,1 PL:DP:SP:GT:GQ 57,0,87:10:0:0/1:60 +chr10 105937036 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105937956 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105944706 . A T 7.8 . DP=11;AF1=0.5009;CI95=0.5,0.5;DP4=1,0,3,0;MQ=47;PV4=1,0.11,0.3,1 PL:DP:SP:GT:GQ 37,0,24:4:0:0/1:27 +chr10 105952535 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105967931 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105971131 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 105971294 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 106020765 . A C,G 5.29 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 58,29,37,23,0,37:4:0:1/1:49 +chr10 106027237 . TT TTCT 5.09 . INDEL;DP=9;AF1=0.502;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.41 PL:DP:SP:GT:GQ 41,0,21:3:0:0/1:24 +chr10 106053185 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 106064103 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 106075363 . G A 9.53 . DP=3;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.36,0.33,1 PL:DP:SP:GT:GQ 39,0,22:3:0:0/1:25 +chr10 106076377 . ca cATTACAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106091744 . G GATCTTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106121259 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106181114 . TG TGCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106203254 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 106240979 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 106243551 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 106246852 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106322715 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 106362591 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106425752 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106427030 . AA AAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106435438 . g gCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106449749 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106470364 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 106511364 . g gTTTGTCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 106522678 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 106548186 . ac aCTCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106562217 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106592631 . a aAG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 106601872 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 106602863 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106626852 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 106630315 . A ACGAGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 106654382 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106654563 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 106692691 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 106697752 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106703672 . C A 7.05 . DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,14:2:0:0/1:17 +chr10 106716265 . G C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 106738171 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106750803 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 106778569 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 106849257 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 106879199 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 106923984 . G A 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr10 106943089 . T TCA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 106989164 . ca cAGTGa 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 106990560 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106994480 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 107006604 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107006685 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107013291 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107015506 . T G 28 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=14,3,0,8;MQ=49;PV4=0.00015,0.0023,0.0007,0.2 PL:DP:SP:GT:GQ 58,0,255:25:38:0/1:61 +chr10 107030889 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107038642 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107046880 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107047523 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 107049077 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 107052914 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 107062382 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107076321 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 107086956 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107156664 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 107238684 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 107255086 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 107274117 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107278938 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107307607 . t tCTAGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 107320167 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107357395 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107368610 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 107389616 . g gATCGCCGGCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 107413162 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107435417 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107437229 . a aCGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 107449736 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 107453463 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107453478 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107463890 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 107468838 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107517864 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107566162 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107576467 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107583187 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107589397 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 107601435 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 107614456 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107676886 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107692020 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107712552 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 107785146 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107786856 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107861014 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 107944986 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107955065 . G T 3.57 . DP=2;AF1=0.5048;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,17:2:0:0/1:20 +chr10 107957086 . A G 11.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 107970285 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 107972892 . A T 3.41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr10 107978203 . T TGTACTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108030566 . gccc gCCCTTAGCccc 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 108051891 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108068866 . caagat cAAGATaagat 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108138027 . aa aACCTTTGa 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 108144405 . g gGTCAATGGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108146313 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 108150455 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 108167106 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 108187619 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108191832 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 108195443 . TC TCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 108247693 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 108289254 . T TTGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108295277 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 108301560 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 108305065 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 108310105 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108310140 . A G 4.77 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,4,0;MQ=41;PV4=0.048,0.0008,1,0.22 PL:DP:SP:GT:GQ 33,0,105:9:13:0/1:36 +chr10 108363883 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108371571 . AGTTTGTTTGTTT AGTTTGTTTGTTTGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108373318 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108380213 . G A 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=11,9,14,12;MQ=49;PV4=1,0.00077,0.00024,1 PL:DP:SP:GT:GQ 223,0,255:46:0:0/1:99 +chr10 108389249 . T C 74 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 106,9,0:3:0:1/1:63 +chr10 108400028 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 108403325 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 108425576 . G C 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr10 108434383 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 108436256 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 108453688 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 108455093 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108466278 . A G 48 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=5,2,7,0;MQ=49;PV4=0.46,0.056,0.0011,1 PL:DP:SP:GT:GQ 78,0,149:14:3:0/1:81 +chr10 108469102 . Gaaaaacaaaaacaaaaacaaaaaca Gaaaaacaaaaacaaaaaca 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108471380 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108489914 . G C 68 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,10;MQ=48;PV4=1,3.5e-06,9.9e-09,1 PL:DP:SP:GT:GQ 98,0,209:21:0:0/1:99 +chr10 108535880 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108547962 . ag aGAGACCGGCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108550563 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108558208 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 108629065 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 108633096 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108665848 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108692154 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108714539 . t tACTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108730740 . tcagg t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108786843 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 108812465 . CT CTAGTGTAGCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108814943 . TT TTCTTTTTCAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108820174 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 108824423 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108846926 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108900722 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 108906472 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 108907126 . AGA AGAGTGA 7.38 . INDEL;DP=3;AF1=0.505;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,17:2:0:0/1:20 +chr10 108916785 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 108932484 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108936414 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 108936549 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109002613 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109014188 . c cTTTTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109017055 . a aCAGCAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109018800 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109026743 . cc cCGTAc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109039285 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109040393 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109105890 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109108783 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109128919 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109134595 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 109138646 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109139722 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109155979 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 109167442 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 109206736 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109228992 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109236568 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109237575 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 109260404 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109272560 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 109281426 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 109284612 . G GGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109287211 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109293465 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 109322152 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109338027 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109343839 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109365952 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109382503 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 109394800 . ctt cTTGAGTGtt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109412947 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109425797 . G GTCACCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109476970 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109477102 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109536406 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109546478 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109548632 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109555076 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109581665 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109587008 . t tCTTCGGTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109587449 . a aTCTTCGGT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 109587973 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109614016 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109629049 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109632286 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109657605 . A ATAAGATT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 109662941 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 109675926 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109693776 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109701502 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109702981 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109706648 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109721424 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109724221 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109756185 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 109792423 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109797850 . A C 4.21 . DP=2;AF1=0.5161;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,12:2:0:0/1:15 +chr10 109813763 . GT GTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109813855 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109824345 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109824456 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109830369 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109845393 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109848879 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109852006 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109854340 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 109854616 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 109858246 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109871225 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109906973 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109917539 . A AAT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 109923628 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109958817 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109989485 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110034811 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 110092165 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110104003 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 110106797 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 110135383 . C CCAGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110148220 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110162503 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 110169275 . ACCCC ACCCCCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110220400 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 110220739 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 110265385 . tt tTTATCAGTAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110277627 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 110298395 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110307124 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110314689 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110340655 . C CTCTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110344472 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 110365331 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 110386293 . G GTATGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110388654 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 110392190 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110400166 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110402644 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 110417157 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110437090 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 110462663 . g gCGGGGATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110476679 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 110505465 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 110522788 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 110585071 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 110658440 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 110705699 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110787184 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110799524 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110806598 . A T 10.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 110826406 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 110831375 . T TCTGAAGAGGAGTTGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 110832962 . G C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=34 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 110845501 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 110872706 . AG ACGTG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110880973 . t tCAG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 110952817 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110979748 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 110982625 . T TGGCCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110982790 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 111035797 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 111079321 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 111163289 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 111176969 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111225401 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 111253849 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 111272386 . a aCACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 111322356 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 111336867 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 111378747 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111404690 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 111405366 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111406140 . T TGTGAGAGTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 111411739 . T TGCTCTCTCAGAGTG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 111421513 . G A 60.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 93,15,0:5:0:1/1:75 +chr10 111423506 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 111434582 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111440391 . A T 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,1;MQ=46;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 30,0,55:3:0:0/1:33 +chr10 111466152 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111484268 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111513182 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 111538987 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 111540898 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111545884 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111561684 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 111561693 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111584842 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111597311 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111614637 . a aGAGAGCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 111625108 . T C 9 . DP=18;AF1=0.5554;CI95=0.5,1;DP4=1,0,0,4;MQ=50;PV4=0.2,0.16,0.34,1 PL:DP:SP:GT:GQ 38,0,7:5:0:0/1:10 +chr10 111626566 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 111631665 . C G 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,0,28;MQ=48 PL:DP:SP:GT:GQ 157,84,0:28:0:1/1:99 +chr10 111637635 . A C 28.8 . DP=24;AF1=0.95;CI95=0.5,1;DP4=0,1,0,7;MQ=49;PV4=1,0.15,0.29,1 PL:DP:SP:GT:GQ 57,0,0:8:0:1/1:10 +chr10 111669924 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 111674728 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111680936 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111702614 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111708449 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111732687 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111740597 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111833350 . AGG AGGGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 111844649 . AG AGCCTTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 111872797 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 111893380 . A C 5.49 . DP=6;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.33,0,0.44 PL:DP:SP:GT:GQ 34,0,17:3:0:0/1:20 +chr10 111900606 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111911140 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111916800 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111944344 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111997570 . G C 4.86 . DP=2;AF1=0.5162;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,12:2:0:0/1:15 +chr10 112005364 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112033629 . TGGGG TGGGGG 7.15 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 112035461 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 112044553 . GTTCTTCTT GTTCTTCTTCTT 48 . INDEL;DP=18;AF1=0.5718;CI95=0.5,1;DP4=1,0,4,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 85,0,6:5:0:0/1:8 +chr10 112044560 . TT TTCT 7.45 . INDEL;DP=16;AF1=0.9966;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,1,0.35,1 PL:DP:SP:GT:GQ 43,1,0:6:0:1/1:23 +chr10 112053827 . A T,G 7.59 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 47,15,37,9,0,37:3:0:1/1:49 +chr10 112057933 . ga gACACa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112080389 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 112102733 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112105047 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112152551 . C A 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 112175651 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 112194764 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 112196621 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 112208567 . A T 4.77 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.066,0.18,1 PL:DP:SP:GT:GQ 33,0,66:4:0:0/1:36 +chr10 112210419 . C T 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,1,0;MQ=46;PV4=1,1,0.32,1 PL:DP:SP:GT:GQ 31,0,107:4:0:0/1:34 +chr10 112224897 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 112237968 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 112240213 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112247421 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 112328838 . C G 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=47 PL:DP:SP:GT:GQ 137,30,0:10:0:1/1:99 +chr10 112341866 . T G 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=1,7,0,4;MQ=49;PV4=1,0.064,0.026,1 PL:DP:SP:GT:GQ 31,0,157:12:0:0/1:34 +chr10 112342436 . T C 3.01 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,4,0,2;MQ=45;PV4=1,1,0.089,1 PL:DP:SP:GT:GQ 30,0,53:6:0:0/1:33 +chr10 112343862 . T C 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,2,0,2;MQ=48;PV4=0.47,0.25,0.2,1 PL:DP:SP:GT:GQ 34,0,111:6:3:0/1:37 +chr10 112356331 . G A 9.54 . DP=22;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.086,0.26,1 PL:DP:SP:GT:GQ 39,0,20:4:0:0/1:23 +chr10 112361870 . A G 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 112369604 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112379344 . a aACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112417401 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 112421401 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 112455980 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 112480037 . CC CCGATAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112502668 . ACT ACTCCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112538242 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112553788 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 112595939 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 112598325 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112605697 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112614107 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112617569 . T TTTTTGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112626458 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112627559 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 112635837 . G C 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,2,0;MQ=49;PV4=0.33,0.007,0,1 PL:DP:SP:GT:GQ 34,0,41:3:0:0/1:36 +chr10 112641053 . A G 62.6 . DP=27;AF1=0.5939;CI95=0.5,1;DP4=1,0,10,1;MQ=48;PV4=1,0.0027,0.18,1 PL:DP:SP:GT:GQ 92,0,5:12:0:0/1:7 +chr10 112642788 . GTAC G 16.6 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,10,2,0;MQ=50;PV4=0.015,0.38,1,0.45 PL:DP:SP:GT:GQ 54,0,202:12:18:0/1:57 +chr10 112643304 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112649241 . TAAAA TACAAAA,TA 9.94 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 75,31,47,28,0,44:2:0:1/1:41 +chr10 112650488 . T A 21 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,1,0.0071,1 PL:DP:SP:GT:GQ 51,0,42:6:0:0/1:44 +chr10 112653979 . A C 10.4 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.12,0.01,1 PL:DP:SP:GT:GQ 40,0,71:7:0:0/1:43 +chr10 112656353 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 112691118 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112712932 . t tCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112744121 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112746685 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 112768043 . A ATGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112777854 . gg gGCAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112780188 . G GGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112812390 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 112822637 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 112852291 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 112857163 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 112874842 . TG TGAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112880508 . A T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 112882272 . TCCC TCCCCGCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112907308 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112926037 . c cTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112936531 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 112967825 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112975310 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113067576 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113092247 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113129053 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 113179775 . T TAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 113183131 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113186877 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113196093 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113201148 . a aCTCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113208876 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113254294 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 113258348 . T C 24 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 +chr10 113258350 . T G 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 113267802 . T TCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113279804 . TT TTTAGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113279885 . GC GCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113306188 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113306193 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 113306959 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113308313 . t tCAGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113329209 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113350144 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113351087 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113355748 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 113423100 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113464341 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 113470161 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113515152 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113541501 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113545357 . CCTGA C 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 113571492 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113592119 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113611329 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113611331 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113612458 . C CAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113616021 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 113645844 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113648203 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 113702939 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 113711440 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 113725364 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113726208 . G C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113728843 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113784887 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113816545 . GT GTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113839550 . C A 10.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 113845658 . a aTGGCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113849405 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113855001 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113862045 . C CTT 9.05 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 113896335 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113917085 . T A 99 . DP=36;AF1=1;CI95=1,1;DP4=2,0,3,21;MQ=45;PV4=0.031,1,0.00033,1 PL:DP:SP:GT:GQ 255,48,0:26:15:1/1:99 +chr10 113920465 . G A 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,11,12;MQ=43 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr10 113920652 . T C 89.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,1,1,9;MQ=48;PV4=1,1,0.14,0.018 PL:DP:SP:GT:GQ 122,18,0:11:0:1/1:90 +chr10 113921354 . G A 6.02 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 113923595 . C G 99 . DP=18;AF1=1;CI95=0.5,1;DP4=0,1,0,10;MQ=44;PV4=1,1,0.00087,1 PL:DP:SP:GT:GQ 182,9,0:11:0:1/1:63 +chr10 113940329 . T C 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,1,16;MQ=43;PV4=1,1,2.8e-15,1 PL:DP:SP:GT:GQ 255,38,0:18:0:1/1:99 +chr10 113952336 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113954517 . A ATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113968051 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 113983037 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113983322 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113984694 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114019381 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 114043532 . G C 3.54 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,1,2;MQ=48;PV4=1,0.038,0.029,0.17 PL:DP:SP:GT:GQ 31,0,156:9:0:0/1:34 +chr10 114043541 . G A 14.2 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,3;MQ=48;PV4=0.43,0.28,0.13,1 PL:DP:SP:GT:GQ 44,0,86:7:4:0/1:47 +chr10 114043546 . A G 9.52 . DP=14;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,0,3;MQ=49;PV4=0.4,0.39,0.14,0.39 PL:DP:SP:GT:GQ 39,0,30:5:0:0/1:32 +chr10 114053546 . C G 18.1 . DP=48;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,4,1;MQ=50;PV4=1,0.011,0.29,1 PL:DP:SP:GT:GQ 48,0,33:7:0:0/1:36 +chr10 114054572 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 114059330 . TCTCTGTTTTCCTCTGTTTTCC TCTCTGTTTTCC 99 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=3,8,0,9;MQ=50;PV4=0.22,1,1,1 PL:DP:SP:GT:GQ 198,0,255:20:7:0/1:99 +chr10 114059340 . CC CCGTC 8.18 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,12,0,2;MQ=50;PV4=1,1,1,0.084 PL:DP:SP:GT:GQ 45,0,255:16:0:0/1:48 +chr10 114081026 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 114090601 . t tTGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 114101409 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 114135947 . A C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 114154626 . A G 10.4 . DP=18;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.12,0.12,1 PL:DP:SP:GT:GQ 40,0,31:5:0:0/1:33 +chr10 114154627 . A C 6.2 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,1,0.15,0.43 PL:DP:SP:GT:GQ 35,0,47:7:0:0/1:38 +chr10 114154628 . A C,T 3.98 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 46,19,32,13,0,32:3:0:1/1:49 +chr10 114158640 . A T 18.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,1,4,0;MQ=48;PV4=0.43,0.34,0.2,1 PL:DP:SP:GT:GQ 48,0,47:7:0:0/1:47 +chr10 114176776 . T A 18.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,4;MQ=47;PV4=1,0.029,0.29,1 PL:DP:SP:GT:GQ 48,0,120:8:0:0/1:51 +chr10 114176777 . C G 6.2 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,2;MQ=48;PV4=1,0.2,0.047,1 PL:DP:SP:GT:GQ 35,0,99:5:0:0/1:38 +chr10 114186624 . G A 39 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,19,1,10;MQ=49;PV4=0.37,4.2e-11,0.4,1 PL:DP:SP:GT:GQ 69,0,241:30:0:0/1:72 +chr10 114192285 . G A 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,12,2,8;MQ=47;PV4=1,1,1.2e-10,1 PL:DP:SP:GT:GQ 217,0,243:24:0:0/1:99 +chr10 114198852 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114202219 . C T 18.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr10 114205074 . C T 13.2 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=3,11,1,4;MQ=49;PV4=1,0.3,0.03,1 PL:DP:SP:GT:GQ 43,0,174:19:0:0/1:46 +chr10 114224256 . A C,G 21 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 55,11,50,2,0,50:4:0:1/1:63 +chr10 114224502 . C G 11.3 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr10 114236467 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114270461 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114292116 . TG TGCGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 114302108 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114306319 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 114318954 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114335493 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114343577 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114427902 . A G 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,0,0.45 PL:DP:SP:GT:GQ 34,0,67:3:0:0/1:37 +chr10 114430314 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 114433897 . A C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 114445068 . tc tCCCTTTGCc 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114471375 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 114478105 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 114478388 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114485252 . gt gTATCTCTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 114573909 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114581094 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 114589848 . C G 4.77 . DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,27:2:0:0/1:29 +chr10 114599793 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114627535 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 114646332 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 114656706 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114662807 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114673922 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 114677753 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 114743885 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114750859 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 114761853 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114771471 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 114804759 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 114828193 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114829946 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 114852852 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 114876902 . AAAGAA AAA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114900576 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114902624 . CAA CAAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 114918612 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 114919608 . ttctctctctctctctctc ttctctctctctctctc 7.35 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 114927156 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 114927193 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 114937125 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 114959108 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 114968268 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 114983630 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 115020595 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115023002 . tc tCTGAc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115032753 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 115036436 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 115046263 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115046480 . T TGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115060312 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115076280 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115080183 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115089716 . cact c 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 115099463 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115103979 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115112426 . A T 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115112973 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115114808 . AGGG A 4.42 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,0.21,1,1 PL:DP:SP:GT:GQ 40,0,91:3:0:0/1:43 +chr10 115157511 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115163870 . T TGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 115168182 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 115180392 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115187722 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 115188263 . G GTCTGTTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115192395 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 115197087 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115212035 . GGA GGAGA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 115212106 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 115218910 . CCT CCTCTCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 115220091 . A AGACGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115236813 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 115238836 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 115242531 . T G 63.1 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=49 PL:DP:SP:GT:GQ 96,18,0:6:0:1/1:90 +chr10 115242720 . T A 21.5 . DP=17;AF1=0.8277;CI95=0.5,1;DP4=1,0,2,1;MQ=36;PV4=1,1,0.28,0.064 PL:DP:SP:GT:GQ 50,0,1:4:0:1/1:5 +chr10 115253359 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115279410 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115289290 . TTG TTGTG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115299598 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115334124 . C T 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=2,11,5,11;MQ=49;PV4=0.41,1.2e-12,0.0027,0.38 PL:DP:SP:GT:GQ 155,0,255:29:4:0/1:99 +chr10 115338305 . T C 10.4 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=14,0,6,0;MQ=50;PV4=1,3.7e-13,1.4e-05,1 PL:DP:SP:GT:GQ 40,0,235:20:0:0/1:43 +chr10 115338615 . A G 99 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,7;MQ=47;PV4=1,0.13,8.2e-06,1 PL:DP:SP:GT:GQ 143,0,181:15:0:0/1:99 +chr10 115341545 . G C 38 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 68,0,37:8:0:0/1:40 +chr10 115341846 . G A 31 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,4;MQ=49;PV4=1,0.013,0.045,1 PL:DP:SP:GT:GQ 61,0,109:9:0:0/1:64 +chr10 115342904 . G T 4.13 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.32,0.15,1 PL:DP:SP:GT:GQ 32,0,38:4:0:0/1:34 +chr10 115343803 . C T 24 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.063,0.00021,1 PL:DP:SP:GT:GQ 54,0,108:5:0:0/1:57 +chr10 115348726 . GA G 87.5 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=7,0,14,0;MQ=50;PV4=1,4.4e-18,1,0.46 PL:DP:SP:GT:GQ 125,0,126:21:0:0/1:99 +chr10 115349397 . AGGGG AGGG 99 . INDEL;DP=26;AF1=1;CI95=0.5,1;DP4=2,0,15,3;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 147,15,0:20:0:1/1:75 +chr10 115365669 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 115370274 . T C 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,9,2,8;MQ=47;PV4=1,6.9e-08,7.5e-09,0.17 PL:DP:SP:GT:GQ 216,0,255:21:0:0/1:99 +chr10 115372275 . T G 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr10 115373851 . T C 95.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=45 PL:DP:SP:GT:GQ 128,18,0:6:0:1/1:90 +chr10 115377190 . T G 59.8 . DP=13;AF1=0.6243;CI95=0.5,1;DP4=1,0,6,0;MQ=44;PV4=1,1,0.11,0.016 PL:DP:SP:GT:GQ 89,0,4:7:0:0/1:6 +chr10 115377194 . G C 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=45;PV4=1,0.23,0.0018,1 PL:DP:SP:GT:GQ 32,0,67:5:0:0/1:35 +chr10 115380675 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115389267 . G A 46 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=47;PV4=1,0.31,0,1 PL:DP:SP:GT:GQ 76,0,111:7:0:0/1:79 +chr10 115393948 . C T 6.98 . DP=27;AF1=0.4999;CI95=0.5,0.5;DP4=4,8,0,4;MQ=49;PV4=0.52,0.0079,0.00061,0.31 PL:DP:SP:GT:GQ 36,0,255:16:3:0/1:39 +chr10 115401264 . A G 21 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,3;MQ=49;PV4=1,0.05,0.0017,1 PL:DP:SP:GT:GQ 51,0,184:11:0:0/1:54 +chr10 115405664 . C T 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=17,8,6,7;MQ=48;PV4=0.3,0.00031,1.7e-10,1 PL:DP:SP:GT:GQ 201,0,255:38:5:0/1:99 +chr10 115407346 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115410275 . T G 18.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=7,4,0,7;MQ=49;PV4=0.013,0.0017,0.0036,1 PL:DP:SP:GT:GQ 48,0,255:18:19:0/1:51 +chr10 115411614 . A G 99 . DP=46;AF1=1;CI95=1,1;DP4=0,1,12,25;MQ=48;PV4=1,0.019,0.24,1 PL:DP:SP:GT:GQ 227,84,0:38:0:1/1:99 +chr10 115412686 . G A 14.9 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr10 115412793 . A G 16.1 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=0,21,0,17;MQ=50;PV4=1,4.8e-15,0.071,0.38 PL:DP:SP:GT:GQ 46,0,243:38:0:0/1:49 +chr10 115413901 . T C 64 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=0,17,0,26;MQ=49;PV4=1,4.3e-19,0.025,1 PL:DP:SP:GT:GQ 94,0,222:43:0:0/1:97 +chr10 115417289 . G A 43.3 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=49 PL:DP:SP:GT:GQ 76,15,0:5:0:1/1:75 +chr10 115418160 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 115423747 . G A 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 115428290 . C A 16.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 115451495 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115451781 . C T 30 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=12,7,3,3;MQ=48;PV4=0.65,0.00063,0.16,1 PL:DP:SP:GT:GQ 60,0,255:25:2:0/1:63 +chr10 115477101 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 115481390 . T A 5.46 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=10,2,4,0;MQ=49;PV4=1,0.01,0.02,0.48 PL:DP:SP:GT:GQ 34,0,255:16:0:0/1:37 +chr10 115481816 . gag gAGAATag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115491283 . A AAGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115506116 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 115512353 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115526377 . T TACACA 5.08 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,90:3:0:0/1:44 +chr10 115526382 . AAAG A 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,0.41,1,0.48 PL:DP:SP:GT:GQ 41,0,74:3:0:0/1:44 +chr10 115540311 . T G 6.2 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=6,0,2,0;MQ=48;PV4=1,0.26,0.00073,1 PL:DP:SP:GT:GQ 35,0,127:8:0:0/1:38 +chr10 115540411 . T C 12.3 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,7,0,6;MQ=50;PV4=0.49,0.0048,0.058,1 PL:DP:SP:GT:GQ 42,0,205:15:3:0/1:45 +chr10 115599328 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115601169 . A C 5.46 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,3,0;MQ=47;PV4=1,0.19,0.015,1 PL:DP:SP:GT:GQ 34,0,105:8:0:0/1:37 +chr10 115601175 . A C 40 . DP=13;AF1=0.504;CI95=0.5,0.5;DP4=0,1,5,0;MQ=46;PV4=0.17,0.027,0.19,0.022 PL:DP:SP:GT:GQ 70,0,18:6:0:0/1:21 +chr10 115609915 . C G 70.8 . DP=50;AF1=1;CI95=0.5,1;DP4=1,0,3,4;MQ=49;PV4=1,1,0.24,1 PL:DP:SP:GT:GQ 102,6,0:8:0:1/1:49 +chr10 115631539 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 115668149 . A G 99 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=19,16,11,6;MQ=48;PV4=0.56,0.0014,2.4e-17,1 PL:DP:SP:GT:GQ 255,0,255:52:3:0/1:99 +chr10 115677961 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 115713773 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115736885 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115736919 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115755864 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 115762363 . AA AAGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115779835 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115787815 . C CGCGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115787894 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115803589 . G GTTTC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 115818647 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 115837051 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115839413 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115843122 . TCT TCTACT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 115868269 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 115910768 . A C 22 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 115914227 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 115935597 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115954429 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115963509 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115966769 . A ATGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 115986903 . ATGT A 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,0.48,1,1 PL:DP:SP:GT:GQ 38,0,59:3:0:0/1:41 +chr10 115987932 . T C 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 115988190 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 115993655 . AC ACCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116006551 . T C,G 3.41 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 44,18,31,12,0,31:3:0:1/1:49 +chr10 116031358 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 116032746 . G A 59 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,8;MQ=48;PV4=1,5e-08,0.0035,1 PL:DP:SP:GT:GQ 89,0,192:16:0:0/1:92 +chr10 116037895 . C T 31 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr10 116044587 . C T 77.1 . DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 110,21,0:7:0:1/1:84 +chr10 116044697 . G T 4.13 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=1,8,0,4;MQ=50;PV4=1,0.041,0.046,1 PL:DP:SP:GT:GQ 32,0,178:13:0:0/1:35 +chr10 116047731 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 116048648 . G T 9.52 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,0.085,0.0045,1 PL:DP:SP:GT:GQ 39,0,110:8:0:0/1:42 +chr10 116058933 . G A 54.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:DP:SP:GT:GQ 87,15,0:5:0:1/1:75 +chr10 116060194 . AGG AGGG 84 . INDEL;DP=6;AF1=0.5718;CI95=0.5,1;DP4=0,1,1,4;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 121,0,6:6:0:0/1:8 +chr10 116060387 . T C 63.1 . DP=42;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=50 PL:DP:SP:GT:GQ 96,21,0:7:0:1/1:84 +chr10 116068176 . A G 25 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr10 116073696 . C T 99 . DP=34;AF1=1;CI95=1,1;DP4=0,0,13,17;MQ=47 PL:DP:SP:GT:GQ 255,90,0:30:0:1/1:99 +chr10 116075265 . GCCCC GCCCCCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116089908 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 116099323 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 116109745 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 116112383 . A AACC 7.38 . INDEL;DP=2;AF1=0.504;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr10 116138606 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 116161735 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116171331 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 116199010 . C G 76 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=3,8,0,13;MQ=49;PV4=0.082,0.0022,0.0023,1 PL:DP:SP:GT:GQ 106,0,238:24:11:0/1:99 +chr10 116213114 . G C 21 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,1,0.067,1 PL:DP:SP:GT:GQ 51,0,51:8:0:0/1:51 +chr10 116234100 . ttc tTCCGCAtc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116280978 . T C 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 116297626 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116300178 . ac aCTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116307504 . A G 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,9,14;MQ=44 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr10 116335246 . G A 12.3 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,2;MQ=49;PV4=1,0.084,0.33,1 PL:DP:SP:GT:GQ 42,0,59:5:0:0/1:45 +chr10 116396884 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 116404479 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 116407131 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 116423752 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 116425524 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116493347 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 116517487 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 116563615 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116569158 . CT CTCTAT 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,1;MQ=50;PV4=0.33,0.17,1,0.48 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 116575146 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 116606173 . C CT 62.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 100,0,106:9:0:0/1:99 +chr10 116606215 . CT CTAT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr10 116606806 . A G 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 116621154 . C A 40 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,10,2,2;MQ=49;PV4=0.066,0.0082,0.0019,1 PL:DP:SP:GT:GQ 70,0,204:14:12:0/1:73 +chr10 116655005 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 116698116 . C T 6.79 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 116702545 . T G 71.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,1,0,7;MQ=46;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 102,5,0:8:0:1/1:46 +chr10 116730069 . AA AAGTGGA 7.42 . INDEL;DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr10 116735164 . T G 6.2 . DP=44;AF1=0.4999;CI95=0.5,0.5;DP4=7,5,0,5;MQ=50;PV4=0.044,0.034,0.12,0.39 PL:DP:SP:GT:GQ 35,0,230:17:14:0/1:38 +chr10 116759640 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116776841 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 116920043 . T TACGACTCGAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116920180 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 116927418 . AAA AAACCGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116930157 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 116931101 . CT CTTT 11.8 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 116996327 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117016432 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 117021198 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 117047926 . g gTA 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 117069500 . tc tCCTTCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117075175 . G A 84 . DP=28;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=49 PL:DP:SP:GT:GQ 117,27,0:9:0:1/1:99 +chr10 117153278 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117208738 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 117221410 . T C 15.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 117237821 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117299902 . AG AGTGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117300380 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 117307718 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 117308924 . T G 23 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=46;PV4=1,0.16,0.1,1 PL:DP:SP:GT:GQ 53,0,70:8:0:0/1:56 +chr10 117308927 . A C 3.01 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 30,0,41:5:0:0/1:33 +chr10 117357016 . TC TCCAGACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117371297 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 117445422 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 117505614 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 117533317 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 117541823 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117549683 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 117572486 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117590110 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117607333 . T G 7.59 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 117657274 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 117660127 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 117678484 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117694729 . AACA AACACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117704134 . AGCAAGC AGGGCAAGC 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,0.37 PL:DP:SP:GT:GQ 38,0,61:4:0:0/1:41 +chr10 117730791 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117732288 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117751977 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 117799114 . TT TTCGCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117849353 . T C 66 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,7;MQ=48;PV4=0.36,0.043,0.046,1 PL:DP:SP:GT:GQ 96,0,104:11:0:0/1:98 +chr10 117884950 . G A 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,6,9;MQ=43 PL:DP:SP:GT:GQ 255,45,0:15:0:1/1:99 +chr10 117899581 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 117901056 . G T 3.56 . DP=2;AF1=0.503;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,19:2:0:0/1:22 +chr10 117907887 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117909688 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 117917269 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 117919206 . T C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 117925239 . AG AGTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117936218 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 117945908 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 117957213 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 117972272 . gt gTAGGAGTt 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 117999984 . A ATCCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118023499 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 118053967 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118057049 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 118058977 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118117194 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118121048 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118170436 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118183631 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118202993 . AAT AATCTCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118217671 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 118220500 . T G 18.1 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,6;MQ=49;PV4=0.0097,0.0071,1,0.22 PL:DP:SP:GT:GQ 48,0,180:14:20:0/1:51 +chr10 118235523 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 118256972 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118266701 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118274689 . ag aGg 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 118288893 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118291676 . cct cCTCGGGct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118304680 . AAATTA AA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 118313265 . T C 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,13,3;MQ=48 PL:DP:SP:GT:GQ 169,48,0:16:0:1/1:99 +chr10 118356002 . T C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 118357176 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118357490 . C T 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,5,12,3;MQ=47;PV4=0.0036,0.27,1,1 PL:DP:SP:GT:GQ 138,0,47:20:24:0/1:50 +chr10 118357491 . G A 3.01 . DP=34;AF1=0.4997;CI95=0.5,0.5;DP4=15,3,0,4;MQ=47;PV4=0.0048,0.38,0.002,0.3 PL:DP:SP:GT:GQ 30,0,201:22:23:0/1:33 +chr10 118359548 . T C 21.1 . DP=25;AF1=0.5064;CI95=0.5,0.5;DP4=1,1,2,2;MQ=50;PV4=1,1,0.27,1 PL:DP:SP:GT:GQ 51,0,16:6:0:0/1:19 +chr10 118363642 . T C 99 . DP=24;AF1=1;CI95=0.5,1;DP4=1,1,0,18;MQ=46;PV4=0.1,1,0.0085,1 PL:DP:SP:GT:GQ 133,10,0:20:0:1/1:60 +chr10 118363664 . T G 3.01 . DP=18;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,3;MQ=45;PV4=1,0.0042,1,0.23 PL:DP:SP:GT:GQ 30,0,65:5:0:0/1:33 +chr10 118364818 . G T 70 . DP=17;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=47 PL:DP:SP:GT:GQ 103,39,0:13:0:1/1:99 +chr10 118364842 . A G 70 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=15,0,12,0;MQ=49;PV4=1,6.8e-11,0.00086,0.27 PL:DP:SP:GT:GQ 100,0,234:27:0:0/1:99 +chr10 118364967 . G C 99 . DP=57;AF1=0.5;CI95=0.5,0.5;DP4=8,23,7,13;MQ=49;PV4=0.54,2e-14,4.5e-09,1 PL:DP:SP:GT:GQ 187,0,255:51:3:0/1:99 +chr10 118378048 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118378125 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118378457 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118378468 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118393909 . T C 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118414467 . t tGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118436068 . G T 4.75 . DP=28;AF1=0.667;CI95=0.5,1;DP4=0,1,0,3;MQ=50;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 32,0,3:4:0:0/1:5 +chr10 118438733 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118438909 . A C 13 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 118443395 . T C 17.1 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=3,6,0,5;MQ=49;PV4=0.26,0.039,0.023,1 PL:DP:SP:GT:GQ 47,0,212:14:6:0/1:50 +chr10 118445257 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 118448890 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 118451541 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 118484593 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 118509599 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118521320 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118529231 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 118531873 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118557029 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 118601769 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118621280 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118637994 . C CCCACCCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118647855 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118736892 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118792743 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 118817263 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118824486 . T TAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 118869689 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118896087 . CGG CGCAAGG 3.25 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 38,0,84:4:0:0/1:41 +chr10 118899706 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118942229 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118960835 . T TTCCAA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,0.21,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 118991318 . T TG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 119003845 . CAAA CA 68.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=50;PV4=1,3.2e-07,1,0.26 PL:DP:SP:GT:GQ 106,0,189:11:0:0/1:99 +chr10 119012909 . G A 4.77 . DP=29;AF1=0.4999;CI95=0.5,0.5;DP4=8,1,7,0;MQ=48;PV4=1,0.26,0.14,0.31 PL:DP:SP:GT:GQ 33,0,113:16:0:0/1:36 +chr10 119014023 . C T 18 . DP=31;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 119014929 . C T 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=8,4,6,7;MQ=47;PV4=0.43,0.1,1,1 PL:DP:SP:GT:GQ 161,0,178:25:4:0/1:99 +chr10 119014931 . C T 73 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=9,7,8,3;MQ=46;PV4=0.45,0.029,0.017,1 PL:DP:SP:GT:GQ 103,0,230:27:3:0/1:99 +chr10 119014948 . C A 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=8,3,8,3;MQ=45;PV4=1,0.0042,0.0079,1 PL:DP:SP:GT:GQ 220,0,255:22:0:0/1:99 +chr10 119018668 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 119025118 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 119026401 . T C 16.9 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 119029374 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 119029744 . G A 99 . DP=54;AF1=1;CI95=1,1;DP4=0,1,14,25;MQ=47;PV4=1,1,0.42,1 PL:DP:SP:GT:GQ 255,95,0:40:0:1/1:99 +chr10 119049578 . ATT ATTCTT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 119108726 . ca cACGTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119111608 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119119775 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119160464 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119179445 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119195875 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 119209227 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 119234335 . ctctt ct 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 119248444 . T TACTAGCAACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119271618 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 119283045 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119285708 . TT TTAAAGTAAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119286668 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119293289 . TC TCGAAGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119297036 . CGTG CGTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119305236 . T G 5.46 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=11,4,0,4;MQ=49;PV4=0.018,0.028,0.0015,1 PL:DP:SP:GT:GQ 34,0,255:19:17:0/1:37 +chr10 119308499 . C CCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119332230 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119347611 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 119349894 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 119351470 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 119353206 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 119355362 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 119360304 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 119364562 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119409515 . T TGGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119435099 . C CTG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 119441111 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119442318 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119462703 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119466965 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 119467136 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119495731 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119513733 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 119539093 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 119551712 . T TAC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 119556855 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119565191 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119582199 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119611324 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119665330 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 119677192 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119684024 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119684108 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 119686430 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 119693248 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119701826 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 119737659 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119768551 . C T 99 . DP=37;AF1=1;CI95=1,1;DP4=1,1,23,8;MQ=49;PV4=0.48,0.3,0.11,1 PL:DP:SP:GT:GQ 204,48,0:33:3:1/1:99 +chr10 119811722 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119886853 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119907135 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 119911260 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 119917855 . CCATT C 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 119933566 . G GCTTTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119939411 . t tCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119950451 . A T 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 119994590 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119998713 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 120003670 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120011029 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120018437 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120024366 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 120028083 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 120034049 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120038516 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120041888 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120056166 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 120082522 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120095037 . GA G 32.5 . INDEL;DP=5;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.0076,1,0.059 PL:DP:SP:GT:GQ 70,0,28:4:0:0/1:31 +chr10 120168560 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120174516 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120174595 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120196105 . TT TTTCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 120209553 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120225282 . TG TGAATAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 120237204 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120245162 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120271756 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 120317649 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120332647 . A T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 120401343 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120403764 . G C 6.98 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.24,0.24,0.2 PL:DP:SP:GT:GQ 36,0,59:4:0:0/1:39 +chr10 120413215 . ca cAGa 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 120429864 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 120440360 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120446033 . C A 16.1 . DP=10;AF1=0.5032;CI95=0.5,0.5;DP4=1,0,3,0;MQ=44;PV4=1,0.052,0.15,0.17 PL:DP:SP:GT:GQ 46,0,19:4:0:0/1:22 +chr10 120446040 . A G 8.64 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,2,0;MQ=48;PV4=1,0.09,0.03,1 PL:DP:SP:GT:GQ 38,0,146:7:0:0/1:41 +chr10 120489864 . A G 6.98 . DP=33;AF1=0.4999;CI95=0.5,0.5;DP4=3,16,0,5;MQ=49;PV4=1,0.014,2.3e-09,1 PL:DP:SP:GT:GQ 36,0,255:24:0:0/1:39 +chr10 120489874 . T A 18.1 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,6,0,4;MQ=48;PV4=0.52,0.23,0.17,1 PL:DP:SP:GT:GQ 48,0,154:12:3:0/1:51 +chr10 120495072 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120506395 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120513992 . C A 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.14,0,1 PL:DP:SP:GT:GQ 32,0,83:3:0:0/1:35 +chr10 120518283 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120536857 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120539031 . C A 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 120571971 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120577322 . T G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr10 120583399 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120593641 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120604691 . A T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 120612005 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 120616727 . A ATCTGTGCTG 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 120625669 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 120654433 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 120690653 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120692430 . A T 3.01 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,1,0.0049,1 PL:DP:SP:GT:GQ 30,0,42:4:0:0/1:33 +chr10 120692742 . G A 29 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=45;PV4=0.33,0.15,0,1 PL:DP:SP:GT:GQ 59,0,41:3:0:0/1:44 +chr10 120692771 . T C 43 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,4;MQ=48;PV4=1,4.5e-05,5.6e-12,0.032 PL:DP:SP:GT:GQ 73,0,208:13:0:0/1:76 +chr10 120735107 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120750197 . t tCCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 120761509 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 120809325 . G T 19.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=5,2,2,5;MQ=49;PV4=0.29,0.073,0.056,1 PL:DP:SP:GT:GQ 49,0,130:14:5:0/1:52 +chr10 120810623 . A C 19.6 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 52,12,0:4:0:1/1:72 +chr10 120817450 . A G 34.3 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 67,15,0:5:0:1/1:75 +chr10 120818609 . C T 26.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 59,15,0:5:0:1/1:75 +chr10 120820224 . C A 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 120828969 . A G 99 . DP=14;AF1=1;CI95=0.5,1;DP4=1,0,10,0;MQ=44;PV4=1,1,3.2e-09,1 PL:DP:SP:GT:GQ 188,11,0:11:0:1/1:66 +chr10 120832596 . T G 6.25 . DP=4;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,1,0,0.27 PL:DP:SP:GT:GQ 35,0,15:3:0:0/1:18 +chr10 120837837 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 120846962 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 120852551 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120856685 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120889022 . T C 31 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr10 120893128 . ggtgg gGTGGTgtgg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 120905976 . cgtgtgtgtgt cGTgtgtgtgtgt 11.7 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=35 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 120917269 . A T 4.61 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 120917445 . G A 99 . DP=55;AF1=1;CI95=1,1;DP4=0,0,7,15;MQ=48 PL:DP:SP:GT:GQ 214,66,0:22:0:1/1:99 +chr10 120919179 . G A 82 . DP=28;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=49 PL:DP:SP:GT:GQ 115,42,0:14:0:1/1:99 +chr10 120919246 . T C 99 . DP=32;AF1=1;CI95=1,1;DP4=0,1,10,17;MQ=50;PV4=1,7.6e-08,0.33,1 PL:DP:SP:GT:GQ 164,51,0:28:0:1/1:99 +chr10 120920588 . T C 7.59 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 120925086 . A C 4.13 . DP=21;AF1=0.4998;CI95=0.5,0.5;DP4=6,2,3,0;MQ=48;PV4=1,0.18,0.33,1 PL:DP:SP:GT:GQ 32,0,167:11:0:0/1:35 +chr10 120925121 . C A 6.98 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,0,3;MQ=46;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 36,0,112:7:0:0/1:39 +chr10 120928092 . A G 22 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,1,0.071,1 PL:DP:SP:GT:GQ 52,0,54:8:0:0/1:53 +chr10 120932228 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 120933324 . G A 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=45 PL:DP:SP:GT:GQ 132,21,0:7:0:1/1:84 +chr10 120933676 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120933901 . T C 38 . DP=17;AF1=1;CI95=1,1;DP4=1,0,14,0;MQ=50;PV4=1,0.14,0.4,1 PL:DP:SP:GT:GQ 71,25,0:15:0:1/1:99 +chr10 120950998 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120964311 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 120969061 . TGG TGGTCTGGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 120977630 . A ACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121005831 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 121025018 . gag gAGATCACTGTAag 10.8 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 121049032 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121069218 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 121102990 . T A 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 121118443 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 121145887 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121147387 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 121182314 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121190958 . G C 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,2,0;MQ=46;PV4=1,0.045,0.11,0.37 PL:DP:SP:GT:GQ 31,0,98:5:0:0/1:34 +chr10 121199189 . T C 86 . DP=18;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=49 PL:DP:SP:GT:GQ 119,42,0:14:0:1/1:99 +chr10 121199437 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121201626 . T C 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=46 PL:DP:SP:GT:GQ 150,57,0:19:0:1/1:99 +chr10 121207895 . G A 15.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 121208381 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 121211914 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 121238829 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 121249181 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 121268793 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121274955 . AA AAGTAGCA 5.08 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,45:3:0:0/1:43 +chr10 121274957 . T G 3.01 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.22,0.24,1 PL:DP:SP:GT:GQ 30,0,39:4:0:0/1:32 +chr10 121287019 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=44 PL:DP:SP:GT:GQ 199,48,0:16:0:1/1:99 +chr10 121306267 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121328888 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121329664 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121336043 . G T 12.3 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,0.42,0.13,1 PL:DP:SP:GT:GQ 42,0,48:4:0:0/1:44 +chr10 121338401 . T A 61.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 94,15,0:5:0:1/1:75 +chr10 121343632 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 121352292 . c cTTTTAGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121398094 . A G 6.98 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr10 121436362 . A G 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=8,14,11,4;MQ=49;PV4=0.045,1.6e-06,1.5e-06,1 PL:DP:SP:GT:GQ 145,0,255:37:13:0/1:99 +chr10 121442611 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121442698 . C A 4.8 . DP=7;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.26,0.13,0.028 PL:DP:SP:GT:GQ 33,0,17:4:0:0/1:20 +chr10 121479874 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121483052 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 121491168 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 121536025 . T TGTCGGCGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121565015 . C G 85 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=47 PL:DP:SP:GT:GQ 118,24,0:8:0:1/1:96 +chr10 121591175 . T G 13.5 . DP=11;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,0.41,0.27,1 PL:DP:SP:GT:GQ 43,0,9:5:0:0/1:12 +chr10 121595221 . A G 17.1 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,5;MQ=49;PV4=0.47,0.19,0.032,1 PL:DP:SP:GT:GQ 47,0,108:12:3:0/1:50 +chr10 121596391 . A G 3.01 . DP=18;AF1=0.4997;CI95=0.5,0.5;DP4=6,0,1,3;MQ=49;PV4=0.033,0.042,0.024,0.26 PL:DP:SP:GT:GQ 30,0,86:10:15:0/1:33 +chr10 121604911 . aa aACGCCCTAGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121612471 . A G 16.5 . DP=11;AF1=0.5554;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 46,0,7:4:0:0/1:10 +chr10 121632453 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 121653536 . ct cTAt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 121655952 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 121662341 . CAG CAGAG 4.42 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=6,3,2,0;MQ=50;PV4=1,1,1,0.46 PL:DP:SP:GT:GQ 40,0,209:11:0:0/1:43 +chr10 121662353 . G C 6.2 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=8,1,0,4;MQ=49;PV4=0.007,0.007,5.8e-05,1 PL:DP:SP:GT:GQ 35,0,204:13:22:0/1:38 +chr10 121671747 . T G 24 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=48;PV4=1,0.21,0.15,1 PL:DP:SP:GT:GQ 54,0,81:8:0:0/1:57 +chr10 121675459 . A T 20.1 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,5;MQ=49;PV4=1,1,0.11,0.11 PL:DP:SP:GT:GQ 50,0,34:8:0:0/1:37 +chr10 121679013 . A G 44.1 . DP=52;AF1=0.5102;CI95=0.5,0.5;DP4=1,1,6,1;MQ=48;PV4=0.42,0.39,1,1 PL:DP:SP:GT:GQ 74,0,14:9:4:0/1:17 +chr10 121685387 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 121689335 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121693353 . T TAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 121713232 . G A 11.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 121723839 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 121734850 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121756821 . GCAGCTGC G 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 38,0,129:4:0:0/1:41 +chr10 121773793 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 121775820 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121808003 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121836648 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121860079 . A AAAGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121863786 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 121866396 . g gTGTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121905242 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121936767 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 121972204 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 121980043 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122045546 . G A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122082325 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 122102226 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 122148462 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122148700 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122153744 . GAACT G 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 122159704 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122182281 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122201620 . A G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122216590 . AGT AGTTGCGT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 122242990 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122278402 . T A 37 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,6;MQ=47;PV4=0.18,0.031,0.066,1 PL:DP:SP:GT:GQ 67,0,78:10:7:0/1:70 +chr10 122286653 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122303988 . A ATTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122315156 . c cTTCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122341919 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122358116 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122362513 . c cTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122371124 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122373653 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 122405818 . TGAGGG TG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 122407323 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122446736 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 122474098 . C G 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=42;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,36:2:0:0/1:36 +chr10 122491566 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 122552689 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 122583349 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 122597708 . T TGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122624026 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122625232 . T G 9.52 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=45;PV4=1,0.17,0.25,0.42 PL:DP:SP:GT:GQ 39,0,92:7:0:0/1:42 +chr10 122625233 . T G 20 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,4;MQ=46;PV4=1,0.34,0.47,1 PL:DP:SP:GT:GQ 50,0,85:9:0:0/1:53 +chr10 122626615 . T G 45 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=2,10,9,0;MQ=49;PV4=0.00022,0.0014,0.043,0.067 PL:DP:SP:GT:GQ 75,0,237:21:37:0/1:78 +chr10 122630825 . A C 12.3 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=10,3,1,4;MQ=49;PV4=0.047,0.012,0.05,1 PL:DP:SP:GT:GQ 42,0,240:18:13:0/1:45 +chr10 122646113 . C T 14.2 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.0066,0.22,1 PL:DP:SP:GT:GQ 44,0,38:4:0:0/1:40 +chr10 122648256 . C CGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122648671 . T A 21.1 . DP=20;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,3;MQ=45;PV4=1,0.15,0.29,1 PL:DP:SP:GT:GQ 51,0,16:4:0:0/1:19 +chr10 122648776 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122650531 . TAT TATGTTTGCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122660995 . GTTC GTTCCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122663585 . G A 67 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=11,7,8,2;MQ=49;PV4=0.42,7.7e-08,5.1e-21,0.48 PL:DP:SP:GT:GQ 97,0,255:28:4:0/1:99 +chr10 122665310 . T A 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=9,0,5,0;MQ=50;PV4=1,0.00027,0.04,1 PL:DP:SP:GT:GQ 37,0,191:14:0:0/1:40 +chr10 122665509 . T G 6.98 . DP=43;AF1=0.4999;CI95=0.5,0.5;DP4=17,2,0,6;MQ=49;PV4=0.00016,0.00053,0.036,1 PL:DP:SP:GT:GQ 36,0,255:25:38:0/1:39 +chr10 122668296 . G A 79 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,8;MQ=48;PV4=1,0.048,7.1e-06,0.13 PL:DP:SP:GT:GQ 109,0,190:20:0:0/1:99 +chr10 122696673 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122698556 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122705265 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 122727754 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 122757867 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 122791956 . TGA TGAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122814197 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 122834639 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122852544 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 122893055 . A G 4.61 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 122898276 . C CATGTATGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122919289 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 122945547 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 122961166 . cac cACCAac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122965656 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 122969444 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122969805 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122971222 . TA TACCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122993278 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122993954 . c cGAAAAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123006168 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 123043329 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123044671 . C CGT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 123050883 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123054148 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123068679 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123082598 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 123085955 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 123089193 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123094167 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123119635 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 123134876 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123199017 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123212298 . T A 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr10 123243138 . AGTGTGTGTGT AGTGTGTGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 123258028 . A C 21 . DP=21;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,7,0;MQ=50;PV4=0.12,7.6e-05,0.31,1 PL:DP:SP:GT:GQ 51,0,28:8:0:0/1:31 +chr10 123271139 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123279745 . C T 3.55 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123324129 . T G 7 . DP=5;AF1=0.5031;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.077,0.11,0.46 PL:DP:SP:GT:GQ 36,0,19:3:0:0/1:22 +chr10 123333499 . GCA GCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123354633 . CAG CAGACAAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123370223 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123371035 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 123371184 . TGTGAGG TG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123374097 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123424163 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 123428264 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 123436383 . AT ATTTT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 123448080 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 123462483 . A ATTTCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123470920 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123581407 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123596254 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,15,2;MQ=45 PL:DP:SP:GT:GQ 236,51,0:17:0:1/1:99 +chr10 123597896 . t tCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123604058 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 123629566 . T G 3.54 . DP=31;AF1=0.4998;CI95=0.5,0.5;DP4=1,3,0,5;MQ=49;PV4=0.44,0.052,0.31,1 PL:DP:SP:GT:GQ 31,0,86:9:0:0/1:34 +chr10 123660289 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123725940 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123733614 . AAC AACAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123766190 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 123773040 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 123783901 . ga gATTTTGTCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123810060 . G A 79 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=4,14,1,14;MQ=49;PV4=0.35,1.9e-13,0.0006,1 PL:DP:SP:GT:GQ 109,0,255:33:5:0/1:99 +chr10 123818953 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 123822974 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 123842726 . AG AGG 3.25 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123845322 . T C,G 16.6 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=50 PL:DP:SP:GT:GQ 49,12,45,0,2,45:5:0:1/1:72 +chr10 123850473 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 123855221 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123873872 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123880037 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 123900808 . C CAAGGGAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123903165 . T A 6.2 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=3,3,0,3;MQ=49;PV4=0.46,0.057,0.024,0.45 PL:DP:SP:GT:GQ 35,0,166:9:3:0/1:38 +chr10 123923560 . CCC CCCCTACC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 123927025 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123976391 . C A 42.3 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=47 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 +chr10 123990956 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 123995695 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123996976 . G A 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=11,7,5,8;MQ=49;PV4=0.29,5e-19,0.00049,0.11 PL:DP:SP:GT:GQ 143,0,255:31:5:0/1:99 +chr10 124001539 . G C 25.3 . DP=33;AF1=0.5336;CI95=0.5,1;DP4=1,0,0,5;MQ=48;PV4=0.17,0.17,0.26,1 PL:DP:SP:GT:GQ 55,0,9:6:0:0/1:12 +chr10 124013604 . C A 65 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=1,16,0,12;MQ=49;PV4=1,1.8e-10,0.00086,1 PL:DP:SP:GT:GQ 95,0,255:29:0:0/1:98 +chr10 124024825 . G GT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 124036226 . T C 9.58 . DP=16;AF1=0.508;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.17,1,1 PL:DP:SP:GT:GQ 39,0,15:4:0:0/1:18 +chr10 124036494 . T C 54.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 87,18,0:6:0:1/1:90 +chr10 124062470 . G GTGTATGGAT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 124065984 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 124066652 . G A 99 . DP=29;AF1=1;CI95=1,1;DP4=2,0,26,0;MQ=48;PV4=1,1,0.07,1 PL:DP:SP:GT:GQ 146,40,0:28:0:1/1:99 +chr10 124089036 . G A 97.3 . DP=35;AF1=0.543;CI95=0.5,1;DP4=1,0,3,10;MQ=48;PV4=0.29,2.8e-06,0.23,0.47 PL:DP:SP:GT:GQ 127,0,8:14:0:0/1:11 +chr10 124095982 . A G 46 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=16,0,9,0;MQ=49;PV4=1,6.2e-06,0.00014,0.41 PL:DP:SP:GT:GQ 76,0,232:25:0:0/1:79 +chr10 124096209 . C T 37 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=3,16,2,5;MQ=49;PV4=0.59,0.00032,2.7e-07,1 PL:DP:SP:GT:GQ 67,0,255:26:2:0/1:70 +chr10 124102675 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124107499 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124115652 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 124137643 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124138286 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124142250 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 124152936 . GA GAA 55 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 95,12,0:4:0:1/1:72 +chr10 124164313 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124166103 . GGAATGA GGA 4.42 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,41:3:0:0/1:40 +chr10 124166104 . GAA GACAA 5.8 . INDEL;DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,29:3:0:0/1:32 +chr10 124183732 . T C 74 . DP=14;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=48 PL:DP:SP:GT:GQ 107,33,0:11:0:1/1:99 +chr10 124189197 . A G 57 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=18,17,2,8;MQ=49;PV4=0.15,3.3e-08,4.3e-09,1 PL:DP:SP:GT:GQ 87,0,255:45:8:0/1:90 +chr10 124203421 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124246432 . A AACTATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124249235 . C T 3.54 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.059,0.33,1 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr10 124253347 . ct cTTCCCGACCCGt 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124270071 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 124270456 . TAAA TA 5.79 . INDEL;DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,33:2:0:0/1:35 +chr10 124271589 . G A 98 . DP=38;AF1=1;CI95=1,1;DP4=0,0,1,15;MQ=44 PL:DP:SP:GT:GQ 131,48,0:16:0:1/1:99 +chr10 124271595 . G A 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,1,24;MQ=43 PL:DP:SP:GT:GQ 255,75,0:25:0:1/1:99 +chr10 124288547 . TGAG TGAGAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124316436 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124321432 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124321470 . Cctctctctctct CCTctctctctctct 11.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 124328354 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 124397379 . GAG GAGGGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124439786 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 124441112 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 124443232 . A AGAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124448618 . t tCG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 124455653 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124457452 . C T 99 . DP=52;AF1=1;CI95=1,1;DP4=0,0,17,29;MQ=49 PL:DP:SP:GT:GQ 255,138,0:46:0:1/1:99 +chr10 124459139 . T C 61 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=14,5,6,3;MQ=49;PV4=1,3.9e-09,0.00024,1 PL:DP:SP:GT:GQ 91,0,255:28:0:0/1:94 +chr10 124466680 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124489137 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124524354 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 124531893 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 124534792 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 124594304 . T C 8.64 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=3,6,0,6;MQ=49;PV4=0.23,0.074,0.068,1 PL:DP:SP:GT:GQ 38,0,160:15:6:0/1:41 +chr10 124595870 . TCAG T 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,53:3:0:0/1:44 +chr10 124596984 . A G 4.77 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,0,3;MQ=50;PV4=0.029,2.5e-05,0.047,1 PL:DP:SP:GT:GQ 33,0,136:7:15:0/1:36 +chr10 124615937 . A AGACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124619542 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 124640434 . C T 24 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 +chr10 124648150 . A G 16.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 124648294 . A AAC 7.49 . INDEL;DP=2;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr10 124649592 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 124692017 . G A 8.64 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,6,5,0;MQ=48;PV4=0.0022,0.00027,0.11,1 PL:DP:SP:GT:GQ 38,0,162:11:27:0/1:41 +chr10 124695865 . tc tCAGTCTAGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124697198 . G A 49 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=11,0,11,0;MQ=49;PV4=1,2.1e-12,0.16,0.32 PL:DP:SP:GT:GQ 79,0,214:22:0:0/1:82 +chr10 124698876 . t tAACAGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124711511 . TTTT TTTTATTT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 124723841 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124735117 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 124735127 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 124736337 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 124741634 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 124742792 . G A 47 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=9,1,4,0;MQ=48;PV4=1,0.011,8.3e-08,0.43 PL:DP:SP:GT:GQ 77,0,245:14:0:0/1:80 +chr10 124747108 . T C 56 . DP=6;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,0,4;MQ=46;PV4=1,0.2,0.14,1 PL:DP:SP:GT:GQ 86,0,25:5:0:0/1:28 +chr10 124763005 . cctctctc cctctc 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 124810578 . A C 15.1 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,2,4,0;MQ=48;PV4=0.14,0.097,1,1 PL:DP:SP:GT:GQ 45,0,72:7:8:0/1:48 +chr10 124843916 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 124853291 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124877544 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124880003 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 124892242 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124904348 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 124904986 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 124906237 . TG TGTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124914413 . CTCTG CTCTGTCTG 5.08 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=20,1,6,0;MQ=50;PV4=1,9.7e-07,1,1 PL:DP:SP:GT:GQ 41,0,255:27:0:0/1:44 +chr10 124914414 . TCTG TCTGACTG 99 . INDEL;DP=43;AF1=0.5;CI95=0.5,0.5;DP4=20,1,8,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 167,0,255:29:0:0/1:99 +chr10 124914417 . G GACTC 17.5 . INDEL;DP=44;AF1=0.5;CI95=0.5,0.5;DP4=24,1,7,0;MQ=50;PV4=1,0.00014,1,1 PL:DP:SP:GT:GQ 55,0,255:32:0:0/1:58 +chr10 124917327 . G T 49 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=1,14,10,0;MQ=47;PV4=3.4e-06,1.6e-06,0.00016,1 PL:DP:SP:GT:GQ 79,0,248:25:55:0/1:82 +chr10 124917333 . G C 4.77 . DP=32;AF1=0.4999;CI95=0.5,0.5;DP4=4,11,4,0;MQ=47;PV4=0.018,0.24,2.2e-07,0.48 PL:DP:SP:GT:GQ 33,0,224:19:17:0/1:36 +chr10 124917544 . TACA TA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 124921899 . T G 5.46 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=3,2,0,4;MQ=49;PV4=0.17,0.1,0.05,1 PL:DP:SP:GT:GQ 34,0,100:9:8:0/1:37 +chr10 124937240 . C CCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124972218 . T TGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125003520 . CA CAATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125016911 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125021236 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125043906 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 125046715 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 125056944 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125067463 . t tCAGCCTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125082577 . aa aAGATa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125095848 . ggac g 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 125110006 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125119386 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125138926 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 125149346 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 125155267 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125244159 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125284177 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 125296968 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125305622 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125333705 . C CCCCACGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125334592 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125339853 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 125384188 . A AGT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 125393481 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 125410998 . g gTCCACGAATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125426565 . G C 6.02 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 125441713 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 125457891 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 125478790 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 125482303 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 125486004 . T TCCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125521533 . G A 12.3 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,2;MQ=49;PV4=1,0.093,4.2e-05,0.26 PL:DP:SP:GT:GQ 42,0,200:9:0:0/1:45 +chr10 125528007 . A G 36.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 69,12,0:4:0:1/1:72 +chr10 125528048 . G A 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=45 PL:DP:SP:GT:GQ 135,18,0:6:0:1/1:90 +chr10 125533451 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 125555486 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 125559280 . G C 4.8 . DP=2;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,17:2:0:0/1:20 +chr10 125568627 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 125579873 . G C 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 125596749 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125602486 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125618505 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125622250 . CAAA CAA 84.6 . INDEL;DP=19;AF1=0.5102;CI95=0.5,0.5;DP4=0,2,0,14;MQ=50;PV4=1,2.4e-07,1,1 PL:DP:SP:GT:GQ 122,0,14:16:0:0/1:17 +chr10 125689719 . C CAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125758226 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 125780954 . T G 25.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr10 125781349 . T TAAAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125798123 . C T 16.1 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=10,2,0,5;MQ=48;PV4=0.0034,0.017,0.0037,1 PL:DP:SP:GT:GQ 46,0,234:17:25:0/1:49 +chr10 125800429 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 125801761 . A T 81 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=19,0,8,0;MQ=48;PV4=1,0.0099,2.7e-11,1 PL:DP:SP:GT:GQ 111,0,232:27:0:0/1:99 +chr10 125803303 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 125825105 . T TTCACGCCTAGG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 125834406 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125843550 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 125862440 . GT GTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125921939 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 125925426 . tg tGTCCTCg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125950697 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 125951777 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 125980418 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125986629 . c cGAA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 125995169 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126000044 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126010828 . T TGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126017297 . GCT GCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126026801 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 126045116 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 126058542 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126073771 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 126086730 . G A 52 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=50 PL:DP:SP:GT:GQ 85,27,0:9:0:1/1:99 +chr10 126089434 . G A 99 . DP=7;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=45 PL:DP:SP:GT:GQ 172,21,0:7:0:1/1:84 +chr10 126093991 . T C 99 . DP=32;AF1=1;CI95=0.5,1;DP4=2,2,22,4;MQ=46;PV4=0.17,1,0.11,1 PL:DP:SP:GT:GQ 202,8,0:30:8:1/1:56 +chr10 126100472 . A C 11.1 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 126134865 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 126148218 . g gGAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126150587 . G GTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126171749 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126171761 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 126172863 . A G 74 . DP=31;AF1=1;CI95=1,1;DP4=0,0,2,7;MQ=49 PL:DP:SP:GT:GQ 107,27,0:9:0:1/1:99 +chr10 126185451 . T C 11.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=7,0,4,0;MQ=50;PV4=1,9e-07,0.1,1 PL:DP:SP:GT:GQ 41,0,189:11:0:0/1:44 +chr10 126186541 . G A 23 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=49;PV4=1,0.0003,0.066,0.12 PL:DP:SP:GT:GQ 53,0,74:6:0:0/1:56 +chr10 126199840 . tct tCTAct 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 126219487 . CCTTCTT CCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126231587 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 126232973 . CC CCTTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126283868 . AGGAGG A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126313399 . A G 3.98 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 126313410 . G A 38.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 71,12,0:4:0:1/1:72 +chr10 126313415 . T G 28.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 +chr10 126325281 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 126366013 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 126367165 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126427588 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126429512 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126446262 . TA TACGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 126494374 . a aCGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126514505 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126537934 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126539691 . A C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 126556782 . A G 6.95 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=21 PL:DP:SP:GT:GQ 38,9,0:3:0:1/1:63 +chr10 126580936 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 126592082 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 126631348 . T G 6.2 . DP=38;AF1=0.4999;CI95=0.5,0.5;DP4=14,2,0,5;MQ=49;PV4=0.001,0.0035,3e-10,0.36 PL:DP:SP:GT:GQ 35,0,255:21:30:0/1:38 +chr10 126631901 . T G 40.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 73,12,0:4:0:1/1:72 +chr10 126654176 . C CCTTCTCAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 126681215 . CGGGG CGGG 10.6 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr10 126681410 . A G 9.52 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,0,2;MQ=46;PV4=1,1,0.015,1 PL:DP:SP:GT:GQ 39,0,31:4:0:0/1:33 +chr10 126681415 . T G 26 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr10 126681846 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 126687768 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 126692155 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 126697188 . TTCCA T 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 126714041 . ATG ATGGCGTCTG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 126715629 . C T 57.1 . DP=11;AF1=0.508;CI95=0.5,0.5;DP4=1,0,4,3;MQ=50;PV4=1,0.0019,0.37,0.12 PL:DP:SP:GT:GQ 87,0,15:8:0:0/1:18 +chr10 126715744 . G A 76 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,3;MQ=48;PV4=1,0.1,0.059,0.13 PL:DP:SP:GT:GQ 106,0,86:8:0:0/1:89 +chr10 126716180 . C A 44 . DP=20;AF1=0.504;CI95=0.5,0.5;DP4=1,0,0,6;MQ=47;PV4=0.14,0.003,1,1 PL:DP:SP:GT:GQ 74,0,18:7:0:0/1:21 +chr10 126718995 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 126725288 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126727493 . C G 65 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,0;MQ=48;PV4=1,0.088,0.00078,1 PL:DP:SP:GT:GQ 95,0,127:10:0:0/1:98 +chr10 126768986 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126773005 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126795969 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 126826475 . G GCTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126859018 . C CTG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 126889119 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126891112 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126904236 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 126976939 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 127041630 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 127115780 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 127128646 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 127145793 . AT ATGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127150655 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 127160282 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 127168637 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 127182204 . CA CAAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127211988 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 127233551 . TTCTGA TTCTGATAATCTGA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 127256320 . g gCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 127256542 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127263351 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 127278457 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127314111 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 127324243 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 127324762 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127355992 . G A 17.1 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,2,1,4;MQ=49;PV4=0.24,0.24,0.02,1 PL:DP:SP:GT:GQ 47,0,112:11:6:0/1:50 +chr10 127364515 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127378220 . TTCTTTCTCT TT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 127414478 . A ATCATCT 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 127423940 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 127426430 . A G 36.3 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 69,15,0:5:0:1/1:75 +chr10 127426588 . C A 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,0,20;MQ=44 PL:DP:SP:GT:GQ 215,60,0:20:0:1/1:99 +chr10 127426835 . G T 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=48 PL:DP:SP:GT:GQ 138,45,0:15:0:1/1:99 +chr10 127429218 . A G 4.8 . DP=16;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0,0.2,1 PL:DP:SP:GT:GQ 33,0,17:3:0:0/1:20 +chr10 127436048 . C T 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=12,0,14,0;MQ=48;PV4=1,2.2e-09,4.7e-08,1 PL:DP:SP:GT:GQ 133,0,216:26:0:0/1:99 +chr10 127436411 . TCCCCC TCCCCCC 7.62 . INDEL;DP=18;AF1=0.543;CI95=0.5,1;DP4=1,0,2,1;MQ=50;PV4=1,1,1,0.0015 PL:DP:SP:GT:GQ 44,0,8:4:0:0/1:11 +chr10 127439495 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 127448752 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127452001 . T G 22 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=2,9,0,5;MQ=49;PV4=1,0.011,7.2e-09,1 PL:DP:SP:GT:GQ 52,0,232:16:0:0/1:55 +chr10 127481978 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 127482935 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 127484617 . C G 34 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=6,0,5,0;MQ=49;PV4=1,1.3e-05,0.053,1 PL:DP:SP:GT:GQ 64,0,172:11:0:0/1:67 +chr10 127484653 . G A 9.52 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=10,0,3,0;MQ=49;PV4=1,0.00036,0.0052,1 PL:DP:SP:GT:GQ 39,0,214:13:0:0/1:42 +chr10 127500893 . C A 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=48;PV4=1,0.14,0.0074,1 PL:DP:SP:GT:GQ 48,0,105:10:0:0/1:51 +chr10 127501713 . C CGT 5.08 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 127512426 . TCAG T 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,0.041,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 127522572 . T G 10.4 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,5;MQ=49;PV4=1,0.003,1,1 PL:DP:SP:GT:GQ 40,0,162:13:0:0/1:43 +chr10 127523108 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 127529753 . CTTTT CTTTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127529756 . TTGTGTGTGTGTGT TTGTGTGTGTGTGTGT 40.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 79,6,0:2:0:1/1:49 +chr10 127541922 . T G 17.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 127545533 . AA AAGTGGTCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127548587 . C G 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=46 PL:DP:SP:GT:GQ 141,24,0:8:0:1/1:96 +chr10 127585655 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127662071 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 127670443 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 127684240 . A G 34.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 66,6,0:2:0:1/1:49 +chr10 127685091 . T C 9.6 . DP=41;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.25,0.33,1 PL:DP:SP:GT:GQ 39,0,14:4:0:0/1:17 +chr10 127686517 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 127693432 . C T 19.2 . DP=42;AF1=0.5163;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,0.036,1,0.4 PL:DP:SP:GT:GQ 49,0,12:6:0:0/1:15 +chr10 127693552 . T A 15.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=1,12,0,5;MQ=49;PV4=1,0.072,0.00021,1 PL:DP:SP:GT:GQ 45,0,187:18:0:0/1:48 +chr10 127696257 . ca cAGAGGAGa 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 127716711 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 127729132 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 127729715 . C T 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,43:2:0:0/1:34 +chr10 127737958 . T C 6.98 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,3,0;MQ=48;PV4=0.029,0.0026,0.042,1 PL:DP:SP:GT:GQ 36,0,130:7:15:0/1:39 +chr10 127737961 . GT GACCTCT 3.25 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,51:4:0:0/1:41 +chr10 127778754 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127794894 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 127806555 . G A 96 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=25,0,20,0;MQ=48;PV4=1,3.4e-12,6.1e-10,1 PL:DP:SP:GT:GQ 126,0,245:45:0:0/1:99 +chr10 127824212 . A G 49 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=3,13,6,1;MQ=49;PV4=0.0049,0.009,3.2e-06,1 PL:DP:SP:GT:GQ 79,0,255:23:23:0/1:82 +chr10 127839881 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 127843740 . G T 25 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr10 127843756 . G A 14.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr10 127843921 . T C 13 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 127892463 . T TGGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127901372 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 127919575 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127943027 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 128002551 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 128059135 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128064285 . GA GACTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128079725 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 128081765 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128122811 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 128146266 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 128153623 . G A 76 . DP=15;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=47 PL:DP:SP:GT:GQ 109,24,0:8:0:1/1:96 +chr10 128154420 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 128161805 . T TCGAGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128180665 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 128202603 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128209769 . T C 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 128209797 . C T 24.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 57,15,0:5:0:1/1:75 +chr10 128209959 . G T 94 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=47 PL:DP:SP:GT:GQ 127,42,0:14:0:1/1:99 +chr10 128214579 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128222581 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 128250462 . G C 19.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=40 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr10 128258041 . T TCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128267781 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128284352 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 128318082 . G GAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128322034 . C T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128328346 . G T 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 128348869 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128359668 . G A 29.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 61,6,0:2:0:1/1:49 +chr10 128396951 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 128410589 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 128413266 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128436956 . C T 4.77 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,31:2:0:0/1:32 +chr10 128459111 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128529827 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128555732 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128563598 . CC CCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128595788 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 128788228 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 128826235 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 128865758 . gt gTCTAGAAt 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128886739 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 128896906 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 128897548 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 128907816 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 128914068 . AC ACGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128950927 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128973671 . C G 46 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=4,4,0,10;MQ=48;PV4=0.023,0.012,0.00052,1 PL:DP:SP:GT:GQ 76,0,153:18:16:0/1:79 +chr10 128974621 . C T 35.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 68,12,0:4:0:1/1:72 +chr10 128985064 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 129000403 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 129014747 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129020592 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129075628 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 129093692 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129100288 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129136146 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 129149360 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129151501 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129154317 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129158856 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129158863 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129171661 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129190204 . T TACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129205926 . T A 3.01 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,38:2:0:0/1:32 +chr10 129229210 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129232630 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129241696 . T G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129304843 . GGT GGTTTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129326476 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 129328135 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129338561 . tg tGGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129352721 . GC GCCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129352790 . T TCTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129363292 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 129367757 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 129367872 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129384925 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129392333 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129408615 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129448729 . cc cCATc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129488624 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129517540 . gaaac g 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 129519549 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 129536022 . A C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129538446 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 129548624 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129566381 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129586261 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 129594653 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129595007 . C CTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129606906 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129618202 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129621617 . g gTTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129630442 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129648499 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129652142 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129657145 . t tTGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129691793 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 129715574 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129716450 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129777289 . aa aAATACGACTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129795734 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129811722 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129813374 . tt tTCGCGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129817406 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 129823812 . G GGAAGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129846010 . G A 89 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=18,2,16,4;MQ=49;PV4=0.66,4.1e-22,0.026,1 PL:DP:SP:GT:GQ 119,0,255:40:2:0/1:99 +chr10 129847799 . CAAA CATGAGTAAA 3.25 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.48 PL:DP:SP:GT:GQ 38,0,67:4:0:0/1:41 +chr10 129854369 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=1,0,17,0;MQ=47;PV4=1,1,0.033,1 PL:DP:SP:GT:GQ 136,28,0:18:0:1/1:99 +chr10 129854550 . G A 32 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=49;PV4=1,1.6e-07,9.4e-05,1 PL:DP:SP:GT:GQ 62,0,154:10:0:0/1:65 +chr10 129856564 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129856569 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129859904 . AA AAGCTA 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,53:3:0:0/1:44 +chr10 129859992 . T C 50.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=49 PL:DP:SP:GT:GQ 83,21,0:7:0:1/1:84 +chr10 129867815 . T C 8.44 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 129875998 . C A 19.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,2;MQ=48;PV4=1,0.1,1,1 PL:DP:SP:GT:GQ 49,0,86:6:0:0/1:52 +chr10 129898450 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 129899938 . T A 55 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=2,3,0,8;MQ=48;PV4=0.13,0.022,0.034,1 PL:DP:SP:GT:GQ 85,0,130:13:9:0/1:88 +chr10 129903522 . C G 56 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,9;MQ=48;PV4=0.027,0.075,0.051,1 PL:DP:SP:GT:GQ 86,0,85:14:16:0/1:85 +chr10 129903802 . A G 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=7,10,11,9;MQ=48;PV4=0.51,2.1e-08,0.011,1 PL:DP:SP:GT:GQ 192,0,255:37:3:0/1:99 +chr10 129904560 . C T 99 . DP=63;AF1=1;CI95=0.5,1;DP4=0,1,5,5;MQ=48;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 138,14,0:11:0:1/1:70 +chr10 129908727 . A T 34 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=14,3,0,11;MQ=49;PV4=3.4e-05,0.078,0.099,1 PL:DP:SP:GT:GQ 64,0,172:28:45:0/1:67 +chr10 129914606 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 129917560 . T C 4.15 . DP=14;AF1=0.503;CI95=0.5,0.5;DP4=0,1,1,1;MQ=48;PV4=1,0.037,0.27,1 PL:DP:SP:GT:GQ 32,0,19:3:0:0/1:22 +chr10 129921472 . C A 8.65 . DP=6;AF1=0.5012;CI95=0.5,0.5;DP4=0,1,0,4;MQ=48;PV4=1,0.0011,0.25,1 PL:DP:SP:GT:GQ 38,0,23:5:0:0/1:26 +chr10 129939924 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129951464 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129972383 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129994214 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130009530 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130034334 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130042898 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130044798 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 130044806 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 130048032 . A G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130055763 . G GTGACCCCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130058648 . T TATCTATGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130067678 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130091572 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130110234 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130120257 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130136050 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130190467 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130322886 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 130336278 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 130347619 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130359416 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130374091 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130376844 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130382852 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130399092 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130402204 . gta gTAGCta 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130425538 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130438776 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130438791 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130446679 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130453947 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130488282 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130489490 . C G 4.14 . DP=2;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,20:2:0:0/1:23 +chr10 130489491 . A AAGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130490130 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 130496991 . a aGGTCGACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130535993 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130539028 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 130545229 . A ATACCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130550242 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130555305 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130573824 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130585556 . A ACTGTTTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130634378 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130634383 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130670343 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130683868 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130685314 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130691338 . T G 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,16,1;MQ=46 PL:DP:SP:GT:GQ 176,51,0:17:0:1/1:99 +chr10 130693413 . C G 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 130701070 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130711340 . GT GTCCATCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130723028 . T TAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130734113 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130736752 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130747792 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130759636 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130769453 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130782966 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 130792332 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130814910 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130896336 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130902188 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130907932 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130908081 . G C 7.02 . DP=2;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,16:2:0:0/1:19 +chr10 130935019 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130979230 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130980566 . A G 6.2 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,41:2:0:0/1:37 +chr10 131003551 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 131007632 . TC TCGAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131048041 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 131070083 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 131081591 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 131111679 . gt gTCt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 131118410 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 131124463 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131132286 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131145496 . t tCGAGCAAGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131155177 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 131188179 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 131211594 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131234490 . c cGGGTGA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 131237500 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 131275342 . A T 4.17 . DP=2;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,15:2:0:0/1:18 +chr10 131280209 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 131316575 . ATG ATGGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131318585 . G A 7.81 . DP=2;AF1=0.5019;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,21:2:0:0/1:24 +chr10 131332424 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 131334789 . T C 7.77 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 131340268 . C CTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131346509 . A ATATACGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131362590 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 131369856 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131379634 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 131380589 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131381324 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 131389385 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 131401325 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131447904 . T TGTTTGAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131450281 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131461030 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 131476411 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131506030 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131518748 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131547251 . a aACGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131554718 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131561097 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 131584627 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131610037 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 131610380 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131627925 . CC CCGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131629641 . CG CGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 131629950 . C CTGCTAAA 11.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 131634471 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 131645248 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131649133 . G T 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 131658303 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131671773 . T A 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=3,2,1,2;MQ=49;PV4=1,0.028,1,1 PL:DP:SP:GT:GQ 32,0,153:8:0:0/1:35 +chr10 131671776 . CGT CGTAGT 7.37 . INDEL;DP=16;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr10 131718634 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 131726202 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 131735713 . G GAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131744416 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 131757722 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 131758198 . C CTTTTCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131760352 . A G 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=43 PL:DP:SP:GT:GQ 190,27,0:9:0:1/1:99 +chr10 131761693 . T G 62 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,23,1,11;MQ=49;PV4=1,4.1e-08,5.4e-06,0.49 PL:DP:SP:GT:GQ 92,0,255:37:0:0/1:95 +chr10 131792215 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131806367 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 131839054 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 131861790 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131861800 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 131862594 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131882912 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 131884771 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131901273 . ct cTGt 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 131909275 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131930149 . C G 31 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,3;MQ=46;PV4=0.14,0.25,0.35,1 PL:DP:SP:GT:GQ 61,0,100:7:8:0/1:64 +chr10 131965290 . a aGGCAC 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 131971518 . TTT TTTGGACGTT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 131988151 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132008061 . A T 4.16 . DP=2;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,16:2:0:0/1:19 +chr10 132017356 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 132019021 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 132025554 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132031733 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132039343 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132061041 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132061838 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132063843 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132102637 . CGGT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132118708 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132119284 . t tCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132140467 . A ACTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132167592 . G A 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr10 132179202 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132181057 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 132196956 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132208904 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132219573 . T TCCCAATG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 132222045 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132225661 . G GGAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132237003 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132252623 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132257571 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 132270791 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132271910 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132275004 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132282308 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132294096 . A AGTCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132301476 . gta g 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 132323265 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 132325802 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132396468 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 132413876 . C CCAGGACAT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 132413918 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132414773 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132420857 . cac cACGCGTac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132455507 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132477231 . G GTC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 132478381 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132480953 . CA CAGGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132483056 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132538870 . G GAT 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 132539335 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132554718 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 132556182 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132570517 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 132573453 . T TTTCCCCAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132589933 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132595119 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132595826 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132597154 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132600840 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132606923 . GC GCGCAGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132607851 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 132612571 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132622223 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 132634509 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 132636202 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132655559 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132656404 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132711677 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 132713622 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132724017 . G C 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132734908 . AC ACCAGTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132739296 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 132791173 . GA GAGCCCTAA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 132796536 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132817853 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132823803 . C G 7.77 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 132835756 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132845887 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132865047 . T TAAATATTTGCA 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 132921138 . c cCTTGAGTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132937032 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132941514 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132951315 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132963624 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132975269 . acat a 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 132980522 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132985668 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 133008894 . G A 24.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr10 133008955 . C A 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 133029596 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133035582 . T C 53.2 . DP=6;AF1=0.7303;CI95=0.5,1;DP4=0,1,0,5;MQ=47;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 82,0,2:6:0:0/1:3 +chr10 133067776 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133080736 . C CGTTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133083809 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133086724 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 133093438 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133093443 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133094468 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133114967 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 133122637 . GTGT G 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 133149428 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 133166722 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133185074 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133188973 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133207372 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 133207921 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133211534 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133220696 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 133233101 . GG GGTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133236957 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133242727 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 133248564 . C G 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 133248596 . C T 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 133256049 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133260051 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133260644 . T A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133266945 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 133302540 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133315980 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133335625 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133352260 . C CACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133358587 . A T 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr10 133358917 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 133365379 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133368433 . G GTGACCCGAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133369823 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 133438640 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133456378 . aggtgg agg 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 133469858 . aa aAATGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133480827 . g gGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133480862 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133495459 . AC ACTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133495717 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 133508296 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133513711 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 133541931 . c cGCATAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133558790 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133603215 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133603709 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133605711 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133614493 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133614794 . G GCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133733196 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 133757086 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133765944 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133769482 . G C 4.61 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 133792625 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133797646 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133821427 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133829787 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133829805 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133837972 . T C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 133871358 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 133881586 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133882798 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 133884342 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133884347 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133916398 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133922809 . a aCAAGGTTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133938908 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133957726 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134008606 . C CGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134013856 . G T 23 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr10 134013990 . G A 21 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 +chr10 134016115 . G A 58.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 91,15,0:5:0:1/1:75 +chr10 134022030 . G GAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 134036986 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 134058302 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 134061159 . T A 58 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=44 PL:DP:SP:GT:GQ 90,9,0:3:0:1/1:63 +chr10 134071848 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 134096357 . CT CTTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134114840 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 134117688 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 134133739 . T C 3.02 . DP=2;AF1=0.5023;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,20:2:0:0/1:23 +chr10 134161633 . A G 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 134165279 . GTCC GTCCTCC 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,69:4:0:0/1:41 +chr10 134181256 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134204670 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 134217126 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134223639 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 134225072 . CTG CTGTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134228695 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134292145 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134322033 . C CTCT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 134328468 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 134330221 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134336854 . A T 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr10 134345646 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 134347703 . G GGAC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 134349219 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 134357429 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134359843 . GT GTCT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 134382888 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134389504 . CCACA CCACACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134393061 . G C 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 134438241 . C CTCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134440086 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134445684 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 134464070 . C T 20 . DP=9;AF1=0.6671;CI95=0.5,1;DP4=0,1,0,3;MQ=48;PV4=1,1,0.23,0.24 PL:DP:SP:GT:GQ 49,0,3:4:0:0/1:5 +chr10 134468042 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134492981 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 134502044 . GAAC GAACACAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134503810 . A AGAAGAGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134526067 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 134529175 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 134536568 . TC TCGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134537893 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 134538364 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 134561945 . CT CTAGCAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134563122 . C T 35 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,13,0,9;MQ=49;PV4=1,3.2e-12,1.2e-05,1 PL:DP:SP:GT:GQ 65,0,255:23:0:0/1:68 +chr10 134579300 . G C 15.1 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=5,12,5,0;MQ=49;PV4=0.0096,0.033,3e-05,1 PL:DP:SP:GT:GQ 45,0,255:22:20:0/1:48 +chr10 134594316 . A G 79 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=9,0,9,0;MQ=48;PV4=1,6.1e-05,0.00043,1 PL:DP:SP:GT:GQ 109,0,194:18:0:0/1:99 +chr10 134621672 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 134622408 . T C 13.9 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 134624504 . C T 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 134626453 . C T 15.1 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr10 134627632 . G T 8.64 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,0.24,0.0088,0.18 PL:DP:SP:GT:GQ 38,0,70:7:0:0/1:41 +chr10 134638331 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 134638339 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134677531 . CTATTA CTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134679101 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134679118 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134685090 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 134697836 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134723452 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 134725876 . t tGAG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134729446 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 134736509 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 134739035 . C CGATCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134750604 . C A 7.8 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 134755298 . C G 13.2 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr10 134758804 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134771728 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 134805863 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134813204 . TCG TCGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134815089 . AA AATCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134878265 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 134884910 . ct cTGCGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134910409 . CT CTTGTTAT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134935381 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134935384 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134942166 . A G 42 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,1;MQ=47;PV4=0.44,0.15,0.16,0.28 PL:DP:SP:GT:GQ 72,0,99:9:0:0/1:75 +chr10 134957105 . G C 22.1 . DP=8;AF1=0.504;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,0.14,0.13,1 PL:DP:SP:GT:GQ 52,0,18:4:0:0/1:21 +chr10 134958554 . A G 3.03 . DP=12;AF1=0.5037;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 30,0,18:3:0:0/1:21 +chr10 134997524 . TC TCTTGC 29.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 67,0,74:5:0:0/1:69 +chr10 134997580 . C A 13.4 . DP=4;AF1=0.5207;CI95=0.5,1;DP4=1,0,0,3;MQ=34;PV4=0.25,1,0.087,1 PL:DP:SP:GT:GQ 43,0,11:4:0:0/1:14 +chr10 135010093 . G A 3.64 . DP=2;AF1=0.5205;CI95=0.5,0.5;DP4=0,1,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,11:2:0:0/1:14 +chr10 135017181 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 135022773 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 135034875 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 135053123 . A G 54 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=8,0,7,0;MQ=49;PV4=1,3.8e-07,0.019,0.2 PL:DP:SP:GT:GQ 84,0,195:15:0:0/1:87 +chr10 135059173 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 135067474 . tc tCACCCTATAAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 135069899 . G C 4.8 . DP=2;AF1=0.5049;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,17:2:0:0/1:20 +chr10 135076523 . C A 13 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 135076596 . T C 99 . DP=34;AF1=1;CI95=1,1;DP4=0,1,12,15;MQ=46;PV4=1,1,0.014,1 PL:DP:SP:GT:GQ 255,67,0:28:0:1/1:99 +chr10 135076758 . T C 47.3 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=48 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr10 135077311 . C G 14.7 . DP=4;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.29,0.11 PL:DP:SP:GT:GQ 44,0,6:3:0:0/1:8 +chr10 135082346 . A G 37.3 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 70,15,0:5:0:1/1:75 +chr10 135082462 . AGGCTG AG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 135084232 . CAG CAGAAG 99 . INDEL;DP=5;AF1=0.5554;CI95=0.5,1;DP4=1,0,2,2;MQ=50;PV4=1,1,0.34,1 PL:DP:SP:GT:GQ 152,0,7:5:0:0/1:10 +chr10 135084601 . T C 90.8 . DP=21;AF1=0.95;CI95=0.5,1;DP4=1,0,0,13;MQ=45;PV4=0.071,0.022,0.27,1 PL:DP:SP:GT:GQ 119,0,0:14:0:1/1:10 +chr10 135084950 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 135086380 . C T 59.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 92,15,0:5:0:1/1:75 +chr10 135087521 . G A 25.2 . DP=11;AF1=0.5207;CI95=0.5,1;DP4=0,1,2,1;MQ=49;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 55,0,11:4:0:0/1:14 +chr10 135089997 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 135092590 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 135096784 . A G 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,0,18;MQ=45;PV4=1,1,0.006,1 PL:DP:SP:GT:GQ 182,37,0:19:0:1/1:99 +chr10 135098672 . G A 19 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 135104725 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 135106681 . TGGCGGC TGC 7.35 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr10 135112932 . TG TGTGG 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 41,0,91:3:0:0/1:44 +chr10 135114998 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 135120467 . t tAGGGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 135138853 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 135141572 . G T 65.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 98,12,0:4:0:1/1:72 +chr10 135145419 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 135150977 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 135153096 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 135158172 . G A 13.9 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 135160313 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 135162595 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 135165790 . A G 99 . DP=25;AF1=1;CI95=0.5,1;DP4=1,1,5,11;MQ=46;PV4=1,1,0.02,1 PL:DP:SP:GT:GQ 242,12,0:18:0:1/1:72 +chr10 135170230 . C T 8.23 . DP=7;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.24,0.048 PL:DP:SP:GT:GQ 37,0,6:4:0:0/1:8 +chr10 135170232 . A T 27.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr10 135179458 . G C 99 . DP=40;AF1=1;CI95=1,1;DP4=1,0,25,10;MQ=47;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 255,86,0:36:0:1/1:99 +chr10 135180430 . A G 79.1 . DP=14;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=48 PL:DP:SP:GT:GQ 112,21,0:7:0:1/1:84 +chr10 135184126 . G A 76.6 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,7,1;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 109,11,0:9:0:1/1:66 +chr10 135197680 . G A 52 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=11,13,8,4;MQ=50;PV4=0.3,0.00028,0.0024,1 PL:DP:SP:GT:GQ 82,0,255:36:5:0/1:85 +chr10 135209610 . AA AATTA 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 135211982 . T C 3.54 . DP=23;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,1,2;MQ=48;PV4=1,0.15,0.076,0.48 PL:DP:SP:GT:GQ 31,0,86:9:0:0/1:34 +chr10 135211986 . T C 20 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,1,0,4;MQ=47;PV4=0.048,1,0.063,1 PL:DP:SP:GT:GQ 50,0,70:9:13:0/1:53 +chr10 135233541 . A G 99 . DP=37;AF1=1;CI95=0.5,1;DP4=1,2,4,15;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 202,7,0:22:0:1/1:57 +chr10 135233708 . C A 9.53 . DP=4;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.068,0.077,1 PL:DP:SP:GT:GQ 39,0,25:3:0:0/1:28 +chr10 135241683 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 135266281 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 135273238 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 135283391 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 135285970 . A C 3.02 . DP=2;AF1=0.5023;CI95=0.5,0.5;DP4=0,1,1,0;MQ=39;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,20:2:0:0/1:23 +chr10 135315599 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 135340866 . TC TCC 71.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 111,9,0:3:0:1/1:63 +chr10 135344874 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 135347397 . T C 23.3 . DP=33;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,4;MQ=49;PV4=1,0.26,0.26,1 PL:DP:SP:GT:GQ 53,0,9:5:0:0/1:12 +chr10 135352219 . A T 25 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=47;PV4=1,0.27,1,1 PL:DP:SP:GT:GQ 55,0,46:7:0:0/1:48 +chr10 135362828 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 135373275 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 135412313 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 135414678 . c cTTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 135471842 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 135476967 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 135499159 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 135499767 . a aTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 193194 . T C 68 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,11;MQ=48;PV4=1,8.7e-06,0.0043,1 PL:DP:SP:GT:GQ 98,0,131:16:0:0/1:99 +chr11 193863 . T C 99 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=3,8,8,9;MQ=48;PV4=0.43,4e-06,0.002,1 PL:DP:SP:GT:GQ 197,0,251:28:4:0/1:99 +chr11 197093 . C A 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,35:2:0:0/1:32 +chr11 205910 . C G 4.77 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,1,0.13,0.38 PL:DP:SP:GT:GQ 33,0,45:7:0:0/1:36 +chr11 206089 . G A 20 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.092,0.004,1 PL:DP:SP:GT:GQ 50,0,146:11:0:0/1:53 +chr11 209894 . ACCCCCC ACCC 99 . INDEL;DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,3,5,5;MQ=50;PV4=0.58,0.32,1,1 PL:DP:SP:GT:GQ 255,0,127:14:2:0/1:99 +chr11 216642 . A C 17.8 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 219344 . G C 4.15 . DP=2;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,17:2:0:0/1:20 +chr11 221117 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 227545 . a aGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 231413 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 237087 . A G 17.1 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,4,1,2;MQ=49;PV4=0.43,0.05,0.034,1 PL:DP:SP:GT:GQ 47,0,101:7:0:0/1:50 +chr11 243987 . G A 75 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=48;PV4=1,0.0097,1.5e-06,1 PL:DP:SP:GT:GQ 105,0,183:12:0:0/1:99 +chr11 244129 . C T 17.1 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=9,5,3,2;MQ=49;PV4=1,0.00049,2.6e-07,1 PL:DP:SP:GT:GQ 47,0,255:19:0:0/1:50 +chr11 244197 . T C 95 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=7,19,6,4;MQ=49;PV4=0.12,9e-06,1.2e-09,1 PL:DP:SP:GT:GQ 125,0,255:36:9:0/1:99 +chr11 244490 . ATACCTTTTAGTACCTTTTAG ATACCTTTTAG 99 . INDEL;DP=37;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,7;MQ=50;PV4=0.52,0.078,1,1 PL:DP:SP:GT:GQ 164,0,255:20:3:0/1:99 +chr11 249131 . G A 86 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,10;MQ=48;PV4=1,8.3e-05,0.00051,0.21 PL:DP:SP:GT:GQ 116,0,191:19:0:0/1:99 +chr11 253072 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 272050 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 284538 . T C 9.49 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 41,9,0:3:0:1/1:63 +chr11 290816 . A G 15.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr11 293001 . AGG AGGG 32.5 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 70,0,104:9:0:0/1:73 +chr11 296777 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 304019 . C A 19.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,3;MQ=47;PV4=0.25,0.009,0,1 PL:DP:SP:GT:GQ 49,0,38:4:0:0/1:41 +chr11 308426 . G C 3.41 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 314497 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 320875 . TT TTGGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 349959 . a aGAGAT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 356609 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 356927 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 396701 . C T 57.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 90,18,0:6:0:1/1:90 +chr11 397390 . GT GTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 399757 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 400109 . A G 23 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr11 403980 . G A 25 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 404317 . C T 26.5 . DP=36;AF1=0.8277;CI95=0.5,1;DP4=1,0,0,5;MQ=49;PV4=0.17,1,0.27,1 PL:DP:SP:GT:GQ 55,0,1:6:0:1/1:5 +chr11 406043 . G A 14.4 . DP=6;AF1=0.7303;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.21,0.037 PL:DP:SP:GT:GQ 43,0,2:4:0:0/1:3 +chr11 406473 . A C 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 416483 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 417245 . C A 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 417688 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 425696 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 428385 . A G 67.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 100,18,0:6:0:1/1:90 +chr11 428489 . T C 47.8 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=41 PL:DP:SP:GT:GQ 79,6,0:2:0:1/1:49 +chr11 430127 . T A 6.3 . DP=4;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 35,0,12:3:0:0/1:15 +chr11 433387 . A G 8.44 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 435340 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 444685 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 485345 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 488406 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 490036 . G A 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=10,2,6,10;MQ=49;PV4=0.023,9.8e-10,0.012,1 PL:DP:SP:GT:GQ 177,0,255:28:16:0/1:99 +chr11 506849 . A T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 523059 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 525526 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 532078 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 549959 . C T 8.44 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 551674 . CGGAG CGGAGGAG 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.14 PL:DP:SP:GT:GQ 38,0,67:4:0:0/1:41 +chr11 551980 . G T 5.46 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,2;MQ=49;PV4=0.33,0.057,0.33,0.077 PL:DP:SP:GT:GQ 34,0,41:3:0:0/1:36 +chr11 552321 . C CGA 7.49 . INDEL;DP=4;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 552322 . C A 6.04 . DP=4;AF1=0.6242;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.33,0.47 PL:DP:SP:GT:GQ 34,0,4:3:0:0/1:6 +chr11 552520 . TC TCAAC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 552756 . T C 27 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 +chr11 554214 . G C 42.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=50 PL:DP:SP:GT:GQ 75,21,0:7:0:1/1:84 +chr11 612894 . CCC CCCTCC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 613797 . T A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 617537 . C T 17.1 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=49;PV4=1,0.026,0.18,0.32 PL:DP:SP:GT:GQ 47,0,161:10:0:0/1:50 +chr11 617967 . C G 41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=47 PL:DP:SP:GT:GQ 73,9,0:3:0:1/1:63 +chr11 618172 . A G 69 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,7;MQ=48;PV4=1,8.5e-06,6.3e-06,1 PL:DP:SP:GT:GQ 99,0,225:19:0:0/1:99 +chr11 618693 . G A 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,1,1;MQ=47;PV4=1,0.15,1,1 PL:DP:SP:GT:GQ 34,0,56:4:0:0/1:37 +chr11 665884 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 674458 . G A 44 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=13,0,8,0;MQ=49;PV4=1,5.6e-08,1.1e-05,1 PL:DP:SP:GT:GQ 74,0,227:21:0:0/1:77 +chr11 675941 . T TTGAAGCACTGG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 686798 . G A 75 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=9,0,11,0;MQ=49;PV4=1,4.7e-06,0.0052,1 PL:DP:SP:GT:GQ 105,0,190:20:0:0/1:99 +chr11 691636 . G A 9.52 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.025,0.034,1 PL:DP:SP:GT:GQ 39,0,121:7:0:0/1:42 +chr11 698807 . C T 38 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,1,3,1;MQ=49;PV4=1,0.0036,0.034,0.0029 PL:DP:SP:GT:GQ 68,0,182:10:0:0/1:71 +chr11 700247 . A C 3.41 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 718046 . A AGGGAAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 721719 . g gTC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 747567 . GC GCCCC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 772400 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 802982 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 811853 . C T 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=1,17,1,17;MQ=47;PV4=1,0.00087,1.4e-26,0.48 PL:DP:SP:GT:GQ 232,0,255:36:0:0/1:99 +chr11 828784 . A G 47.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr11 838110 . C T 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,2,12,1;MQ=48;PV4=0.59,1.8e-05,0.00094,0.48 PL:DP:SP:GT:GQ 157,0,255:25:2:0/1:99 +chr11 839108 . CT CTAGACTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 840319 . C T 99 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=46;PV4=1,1,0,1 PL:DP:SP:GT:GQ 133,0,72:8:0:0/1:75 +chr11 850314 . G T 3.69 . DP=3;AF1=0.5334;CI95=0.5,1;DP4=1,0,0,2;MQ=47;PV4=0.33,1,0.061,1 PL:DP:SP:GT:GQ 31,0,9:3:0:0/1:12 +chr11 856545 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 862652 . T C 19 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr11 865503 . G A 22 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 866498 . T C 25 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 870446 . G A 51.3 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=49 PL:DP:SP:GT:GQ 84,15,0:5:0:1/1:75 +chr11 880241 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 902036 . TACACAC TAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 902381 . C G 57 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,7;MQ=46;PV4=1,1,1,0.0096 PL:DP:SP:GT:GQ 87,0,38:11:0:0/1:41 +chr11 907048 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 942619 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 944206 . GG GGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 970490 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 970510 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 990590 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 1012616 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 1018821 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 1062862 . ca cAGCCCCAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1074153 . ACGGCC A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1103003 . G C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 1107593 . C CTG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 1112933 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1112942 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1116850 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1120446 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1128099 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1130933 . gt gTTTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1160060 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 1243630 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1291398 . G T 56 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43 PL:DP:SP:GT:GQ 88,9,0:3:0:1/1:63 +chr11 1291407 . C G 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=41 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 1309956 . C T 43.8 . DP=29;AF1=0.6243;CI95=0.5,1;DP4=1,0,1,4;MQ=47;PV4=0.33,1,0.23,1 PL:DP:SP:GT:GQ 73,0,4:6:0:0/1:6 +chr11 1317611 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1330302 . GG GGTG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 1333890 . a aCCCTCAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 1359335 . T A 4.13 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1378034 . T G 3.07 . DP=2;AF1=0.5126;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,13:2:0:0/1:16 +chr11 1383906 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1393026 . AGTG AG 4.42 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 1393032 . TGG TGGATGGG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1464977 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1473176 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1489216 . A AGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1490494 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1500146 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1508619 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1508889 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1518123 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1521181 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1538715 . CCTGT CCTGTGCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1547797 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 1548070 . AT ATGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1550250 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1557414 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 1581617 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 1618930 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1651550 . C T 22 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=13,8,2,13;MQ=32;PV4=0.0057,0.0027,0.0066,1 PL:DP:SP:GT:GQ 52,0,255:36:22:0/1:55 +chr11 1651830 . G T 16.1 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,7;MQ=49;PV4=1,2.3e-09,0.23,1 PL:DP:SP:GT:GQ 46,0,229:20:0:0/1:49 +chr11 1653347 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 1675398 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 1681900 . T C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 1687642 . CCA CCAGACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1690911 . A C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 1714061 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 1717303 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 1717309 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1731377 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1855854 . G C 31 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=48 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr11 1857173 . T C 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,9,21;MQ=48 PL:DP:SP:GT:GQ 255,90,0:30:0:1/1:99 +chr11 1857762 . C T 27 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,8,4,0;MQ=48;PV4=0.007,0.026,1.2e-06,1 PL:DP:SP:GT:GQ 57,0,209:13:22:0/1:60 +chr11 1858262 . C T 20 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,0.0022,0.0025,0.43 PL:DP:SP:GT:GQ 50,0,131:7:0:0/1:53 +chr11 1861912 . G A 3.57 . DP=3;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,0,2;MQ=49;PV4=0.33,0,0,1 PL:DP:SP:GT:GQ 31,0,16:3:0:0/1:19 +chr11 1866207 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 1869572 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1873546 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 1888502 . G GCCAGGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1901467 . A C 3.41 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 1907852 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1944202 . A G 99 . DP=36;AF1=1;CI95=1,1;DP4=0,0,10,21;MQ=48 PL:DP:SP:GT:GQ 250,93,0:31:0:1/1:99 +chr11 1947789 . G A 14.2 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,5;MQ=50;PV4=1,9.9e-05,0.012,1 PL:DP:SP:GT:GQ 44,0,214:16:0:0/1:47 +chr11 1947793 . C T 9.52 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,7;MQ=49;PV4=1,3.9e-10,1,1 PL:DP:SP:GT:GQ 39,0,202:16:0:0/1:42 +chr11 1950302 . A G 80 . DP=21;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=49 PL:DP:SP:GT:GQ 113,60,0:20:0:1/1:99 +chr11 1955914 . C T 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 1956212 . T C 11.1 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 1961210 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 1970066 . CC CCAAAAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1975901 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1977552 . G T 18.1 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,5;MQ=47;PV4=1,0.12,0.32,0.15 PL:DP:SP:GT:GQ 48,0,116:12:0:0/1:51 +chr11 1977557 . C T 33 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=48;PV4=1,1,0.08,1 PL:DP:SP:GT:GQ 63,0,37:10:0:0/1:40 +chr11 2022253 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2023635 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 2040780 . C CGCACAGCA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 2057873 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2058760 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2085602 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2094843 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2094853 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2143362 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2155368 . G GATATAGCGA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 2174187 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2181060 . T G 7.59 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 2182004 . A G 38.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 71,15,0:5:0:1/1:75 +chr11 2190951 . C T 58 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,6;MQ=48;PV4=1,0.00075,1.9e-07,1 PL:DP:SP:GT:GQ 88,0,228:20:0:0/1:91 +chr11 2196133 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 2203976 . C G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 2206790 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 2207255 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2209086 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 2212517 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2218005 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2223069 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2225466 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 2229818 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2262325 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 2284524 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2287729 . GCA GCAAGACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2296268 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2308973 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 2310635 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2314153 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2321050 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2337345 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 2356475 . AG AGCG 7.69 . INDEL;DP=2;AF1=0.5554;CI95=0.5,1;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,7:2:0:0/1:10 +chr11 2356866 . C CTAG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.28 PL:DP:SP:GT:GQ 41,0,91:3:0:0/1:44 +chr11 2358019 . t tACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2359312 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2389448 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2424684 . A C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 2427211 . G A 31 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=16,0,8,0;MQ=49;PV4=1,6.8e-13,0.066,1 PL:DP:SP:GT:GQ 61,0,238:24:0:0/1:64 +chr11 2427291 . A C 12.5 . DP=60;AF1=0.5263;CI95=0.5,1;DP4=1,0,5,1;MQ=49;PV4=1,0.054,0.29,1 PL:DP:SP:GT:GQ 42,0,10:7:0:0/1:13 +chr11 2433580 . CCATC CC 10.8 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=50;PV4=1,0.02,1,0.49 PL:DP:SP:GT:GQ 48,0,112:5:0:0/1:51 +chr11 2434840 . C T 8.64 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.0095,0.19,0.43 PL:DP:SP:GT:GQ 38,0,99:6:0:0/1:41 +chr11 2436400 . GC GCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2439542 . A G 19.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 2440450 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2441439 . G T 10.4 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=44;PV4=0.33,0.04,0.21,1 PL:DP:SP:GT:GQ 40,0,38:3:0:0/1:39 +chr11 2441686 . TGG TGGG 29.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 68,6,0:2:0:1/1:49 +chr11 2466889 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 2473729 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 2484857 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 2492922 . g gATCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2495298 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 2503601 . TCCCC TCC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 2511805 . T C 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 2528143 . gt gTATAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2538750 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2545396 . ag aGCTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2551445 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2553177 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2558785 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2560234 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 2569892 . G GTGCTTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2572548 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2606084 . GCT GCTCGGGCGCGCCT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 2687798 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 2687940 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2692973 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 2719151 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2738673 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2745916 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 2798413 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 2815654 . A G 6.79 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 2820876 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2825954 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 2834859 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2834867 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 2850869 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2868878 . T C 33.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 2875169 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2875569 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 2891854 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2912715 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2925621 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2929476 . A G 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=7,1,5,0;MQ=49;PV4=1,0.00093,0.44,1 PL:DP:SP:GT:GQ 33,0,164:13:0:0/1:36 +chr11 2943814 . C T 10.4 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,3;MQ=49;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 40,0,69:6:0:0/1:43 +chr11 2950558 . A G 5.46 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,2;MQ=48;PV4=1,0.26,0.037,1 PL:DP:SP:GT:GQ 34,0,92:5:0:0/1:37 +chr11 2970442 . G A 5.83 . DP=7;AF1=0.5718;CI95=0.5,1;DP4=1,0,3,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,6:4:0:0/1:8 +chr11 2972974 . G A 9.52 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=47;PV4=1,0.15,1,0.23 PL:DP:SP:GT:GQ 39,0,39:5:0:0/1:39 +chr11 2984461 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2987167 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 3020624 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3022358 . CAT C 26.5 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,3;MQ=50;PV4=0.061,1,1,0.2 PL:DP:SP:GT:GQ 64,0,141:11:12:0/1:67 +chr11 3026692 . T G 44.1 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 77,21,0:7:0:1/1:84 +chr11 3031758 . T C 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 3039921 . A G 5.46 . DP=24;AF1=0.4999;CI95=0.5,0.5;DP4=2,2,1,3;MQ=46;PV4=1,0.25,0.12,1 PL:DP:SP:GT:GQ 34,0,90:8:0:0/1:37 +chr11 3040087 . C T 23 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,0.0041,0.18,0.35 PL:DP:SP:GT:GQ 53,0,126:8:0:0/1:56 +chr11 3046109 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 3048140 . A G 22 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,3;MQ=49;PV4=1,0.00017,0.043,1 PL:DP:SP:GT:GQ 52,0,158:8:0:0/1:55 +chr11 3052284 . G T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 3059441 . A G 23 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=8,4,0,6;MQ=48;PV4=0.013,0.003,0.00076,1 PL:DP:SP:GT:GQ 53,0,255:18:19:0/1:56 +chr11 3062113 . G C 6.2 . DP=35;AF1=0.4999;CI95=0.5,0.5;DP4=7,7,6,0;MQ=49;PV4=0.051,0.009,0.0015,1 PL:DP:SP:GT:GQ 35,0,255:20:13:0/1:38 +chr11 3063448 . C A 49 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,3,0,6;MQ=48;PV4=0.18,0.37,0.00011,1 PL:DP:SP:GT:GQ 79,0,110:12:7:0/1:82 +chr11 3069278 . C T 3.04 . DP=14;AF1=0.5061;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.29,0.33,1 PL:DP:SP:GT:GQ 30,0,16:3:0:0/1:19 +chr11 3072317 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 3075919 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 3109403 . A G 27 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 +chr11 3109408 . C T 35.5 . DP=13;AF1=0.8277;CI95=0.5,1;DP4=1,0,4,1;MQ=47;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 64,0,1:6:0:1/1:5 +chr11 3111866 . C T 3.01 . DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.011,0.048,0.0026 PL:DP:SP:GT:GQ 30,0,80:4:0:0/1:33 +chr11 3116207 . AACCCA AA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3140905 . GG GGAG 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3140906 . G GACGGGTCT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3141756 . G A 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 3145624 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 3150369 . C CTAGA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.49 PL:DP:SP:GT:GQ 41,0,55:3:0:0/1:44 +chr11 3150806 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3164090 . T A 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr11 3214508 . CCAAGC CC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3215992 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 3237393 . G A 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 3249829 . G A 61 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=6,1,8,3;MQ=49;PV4=1,5.7e-06,0.09,1 PL:DP:SP:GT:GQ 91,0,179:18:0:0/1:94 +chr11 3257079 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 3360015 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 3381843 . A G 60.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 93,18,0:6:0:1/1:90 +chr11 3392745 . G A 79 . DP=16;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=49 PL:DP:SP:GT:GQ 112,42,0:14:0:1/1:99 +chr11 3392972 . G A 10.4 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 42,9,0:3:0:1/1:63 +chr11 3400334 . A G 6.99 . DP=10;AF1=0.5015;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.19,0.26,1 PL:DP:SP:GT:GQ 36,0,22:3:0:0/1:25 +chr11 3436392 . G A 11.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,2;MQ=37;PV4=1,1.3e-05,0.08,1 PL:DP:SP:GT:GQ 41,0,128:7:0:0/1:44 +chr11 3441080 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3447776 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 3459736 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 3468449 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3566605 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 3578512 . CCC CCCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3584920 . g gTAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3597701 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 3613274 . T A 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 3637480 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 3637818 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 3660058 . C T 5.46 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=0,8,0,4;MQ=50;PV4=1,0.13,0.031,1 PL:DP:SP:GT:GQ 34,0,102:12:0:0/1:37 +chr11 3661585 . ATGG ATGGTGG 74.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=50;PV4=0.4,1,1,1 PL:DP:SP:GT:GQ 112,0,42:5:0:0/1:45 +chr11 3682106 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 3704704 . T C 4.13 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.0074,0.019,1 PL:DP:SP:GT:GQ 32,0,80:4:0:0/1:35 +chr11 3716740 . T A 10.4 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=7,4,0,4;MQ=48;PV4=0.077,0.013,0.053,1 PL:DP:SP:GT:GQ 40,0,255:15:11:0/1:43 +chr11 3724290 . T TTCACGCG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 3729763 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 3740977 . TC TCAGAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3743406 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 3793213 . T C 6.79 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 3802573 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 3828529 . at aTGt 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 3831371 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 3833333 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 3838910 . G C 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 3848945 . C A 34 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,6;MQ=49;PV4=0.4,0.07,0.053,1 PL:DP:SP:GT:GQ 64,0,85:10:0:0/1:67 +chr11 3865639 . t tCAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3890924 . T G 11.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 3916772 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 3941287 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3974026 . AC ACCC 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 3974054 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 3993231 . A G 67 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=42;PV4=1,0.11,0.24,1 PL:DP:SP:GT:GQ 97,0,82:7:0:0/1:85 +chr11 3994172 . A G 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=7,2,0,10;MQ=47;PV4=0.00071,0.35,1.1e-05,1 PL:DP:SP:GT:GQ 131,0,168:19:31:0/1:99 +chr11 3994217 . T TCCA 36.5 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,2;MQ=50;PV4=1,0.43,1,0.013 PL:DP:SP:GT:GQ 74,0,138:6:0:0/1:77 +chr11 3994378 . TTG TTGCTG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4002672 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 4040842 . a aACTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4045787 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 4047134 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 4047781 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 4071802 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 4080728 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 4085143 . T TCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4085687 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 4104060 . A C 94 . DP=11;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=46 PL:DP:SP:GT:GQ 127,27,0:9:0:1/1:99 +chr11 4123345 . C G 74.5 . DP=12;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,8;MQ=47;PV4=1,0.43,0.15,1 PL:DP:SP:GT:GQ 103,0,1:9:0:1/1:5 +chr11 4128751 . C G 21 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=3,9,0,4;MQ=48;PV4=0.53,0.11,0.0037,1 PL:DP:SP:GT:GQ 51,0,254:16:3:0/1:54 +chr11 4133317 . C A 10.2 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 4139776 . T C 21 . DP=10;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.35,0.14,1 PL:DP:SP:GT:GQ 51,0,28:6:0:0/1:31 +chr11 4141132 . C A 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=6,15,4,9;MQ=49;PV4=1,7e-10,2.4e-05,1 PL:DP:SP:GT:GQ 134,0,255:34:0:0/1:99 +chr11 4147872 . A C 6.2 . DP=9;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.11,0.12 PL:DP:SP:GT:GQ 35,0,28:4:0:0/1:30 +chr11 4148010 . G T 7.8 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=48;PV4=0.33,0.0018,0.0099,1 PL:DP:SP:GT:GQ 37,0,80:4:5:0/1:40 +chr11 4149455 . at aTTGt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 4164849 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 4171635 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 4188937 . TG TGCTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4230039 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 4232386 . G C 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.44,0,1 PL:DP:SP:GT:GQ 31,0,65:3:0:0/1:34 +chr11 4232893 . T C 46 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,2,2,1;MQ=48;PV4=1,0.22,0.00057,0.27 PL:DP:SP:GT:GQ 76,0,155:8:0:0/1:79 +chr11 4233141 . TTG TTGTG 5.87 . INDEL;DP=3;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,13:2:0:0/1:16 +chr11 4270408 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 4388963 . T G 3.54 . DP=31;AF1=0.4998;CI95=0.5,0.5;DP4=12,0,0,4;MQ=49;PV4=0.00055,0.00075,0.0016,1 PL:DP:SP:GT:GQ 31,0,211:16:33:0/1:34 +chr11 4389404 . AGGG AGG 99 . INDEL;DP=34;AF1=0.5;CI95=0.5,0.5;DP4=7,6,8,7;MQ=50;PV4=1,2.8e-07,1,0.012 PL:DP:SP:GT:GQ 196,0,213:28:0:0/1:99 +chr11 4391459 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4470223 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 4470639 . CA CATA 3.25 . INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,1,1,0.18 PL:DP:SP:GT:GQ 38,0,91:4:0:0/1:41 +chr11 4471503 . A T 17.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=49;PV4=1,1,0.034,0.4 PL:DP:SP:GT:GQ 47,0,53:9:0:0/1:49 +chr11 4483769 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 4496916 . C T 76 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=47;PV4=1,0.017,0.0011,0.22 PL:DP:SP:GT:GQ 106,0,113:10:0:0/1:99 +chr11 4514272 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 4525268 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 4526650 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4556603 . T G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 4566518 . T C 16.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,1,0,4;MQ=49;PV4=0.015,0.02,0.00023,1 PL:DP:SP:GT:GQ 46,0,172:11:18:0/1:49 +chr11 4566711 . C T 65 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=24,19,3,14;MQ=49;PV4=0.0096,9.5e-18,8.3e-08,0.47 PL:DP:SP:GT:GQ 95,0,255:60:20:0/1:98 +chr11 4575991 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 4589449 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 4593374 . C G 22 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=15,1,0,5;MQ=49;PV4=0.00029,0.00039,0.0003,1 PL:DP:SP:GT:GQ 52,0,255:21:35:0/1:55 +chr11 4594739 . C T 27.8 . DP=12;AF1=0.6243;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 57,0,4:5:0:0/1:6 +chr11 4597454 . A AATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4608553 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4608646 . A C 6.2 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,2,0;MQ=49;PV4=0.33,0.0018,0,1 PL:DP:SP:GT:GQ 35,0,80:4:5:0/1:38 +chr11 4608912 . T C 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,0,2;MQ=49;PV4=0.47,0.23,0.042,1 PL:DP:SP:GT:GQ 31,0,117:6:3:0/1:34 +chr11 4615234 . A G 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=43 PL:DP:SP:GT:GQ 195,30,0:10:0:1/1:99 +chr11 4615794 . A T 5.46 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,2,0;MQ=47;PV4=0.4,0.41,0.18,1 PL:DP:SP:GT:GQ 34,0,83:6:4:0/1:37 +chr11 4621485 . C G 72 . DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=48 PL:DP:SP:GT:GQ 105,24,0:8:0:1/1:96 +chr11 4622159 . T C 98.4 . DP=9;AF1=1;CI95=0.5,1;DP4=0,1,4,4;MQ=48;PV4=1,1,0.22,1 PL:DP:SP:GT:GQ 131,13,0:9:0:1/1:65 +chr11 4622207 . G A 5.46 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,0.11,1,1 PL:DP:SP:GT:GQ 34,0,56:7:0:0/1:37 +chr11 4622208 . G A 10.4 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,1,0.09,0.14 PL:DP:SP:GT:GQ 40,0,63:8:0:0/1:43 +chr11 4623279 . A G 57.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 90,15,0:5:0:1/1:75 +chr11 4624394 . T C 33.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 4624432 . C A 21 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 +chr11 4642904 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 4662153 . G C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr11 4668048 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 4674575 . G A 10.4 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=8,24,12,0;MQ=49;PV4=6e-06,5.8e-11,0.00012,1 PL:DP:SP:GT:GQ 40,0,255:44:52:0/1:43 +chr11 4683526 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 4687630 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 4703165 . C A 3.54 . DP=50;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,3,0;MQ=50;PV4=0.4,0.0013,1,1 PL:DP:SP:GT:GQ 31,0,38:5:0:0/1:33 +chr11 4744543 . A G 13.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 4803310 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4852412 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 4924867 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4928841 . T C 99 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=19,15,18,16;MQ=49;PV4=1,7.8e-29,2.1e-07,0.44 PL:DP:SP:GT:GQ 220,0,255:68:0:0/1:99 +chr11 4929061 . C G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=9,10,7,4;MQ=49;PV4=0.47,1.3e-08,0.00054,1 PL:DP:SP:GT:GQ 136,0,255:30:3:0/1:99 +chr11 4936608 . C G 37 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,3,1,6;MQ=50;PV4=0.12,0.00059,0.11,0.1 PL:DP:SP:GT:GQ 67,0,227:15:9:0/1:70 +chr11 4939947 . CT CTTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 4967406 . A G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr11 4967468 . G A 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=42 PL:DP:SP:GT:GQ 178,15,0:5:0:1/1:75 +chr11 4967960 . CT CTGTGAGT 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.46 PL:DP:SP:GT:GQ 38,0,116:4:0:0/1:41 +chr11 4976267 . A G 17.1 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,1;MQ=47;PV4=0.4,0.13,0.23,1 PL:DP:SP:GT:GQ 47,0,96:5:0:0/1:50 +chr11 4994974 . A T 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 5015589 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 5020416 . A G 27.2 . DP=70;AF1=0.5163;CI95=0.5,1;DP4=1,1,4,1;MQ=50;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 57,0,12:7:0:0/1:15 +chr11 5021055 . C G 96 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=14,10,15,6;MQ=49;PV4=0.53,1.7e-12,0.003,0.16 PL:DP:SP:GT:GQ 126,0,255:45:3:0/1:99 +chr11 5021546 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 5037069 . G T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5046515 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5064518 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5080359 . G A 16.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,6;MQ=49;PV4=0.46,0.00011,0.45,1 PL:DP:SP:GT:GQ 46,0,217:13:3:0/1:49 +chr11 5080811 . A T 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,2;MQ=47;PV4=0.33,0.055,0.24,0.12 PL:DP:SP:GT:GQ 30,0,41:3:0:0/1:33 +chr11 5099183 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5122284 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5141980 . A G 99 . DP=39;AF1=1;CI95=1,1;DP4=0,1,7,27;MQ=47;PV4=1,0.088,0.18,1 PL:DP:SP:GT:GQ 255,66,0:35:0:1/1:99 +chr11 5142490 . G A 65 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=8,14,4,5;MQ=49;PV4=0.7,2.8e-07,4.2e-05,1 PL:DP:SP:GT:GQ 95,0,255:31:2:0/1:98 +chr11 5150870 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 5170651 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 5175757 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 5212768 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5224225 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5228143 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5229730 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 5236459 . A G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 5263669 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 5269584 . T A 29 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=48 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr11 5297310 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 5322737 . A G 99 . DP=61;AF1=0.5;CI95=0.5,0.5;DP4=11,14,10,6;MQ=48;PV4=0.34,0.0086,5e-16,1 PL:DP:SP:GT:GQ 255,0,255:41:5:0/1:99 +chr11 5323071 . C T 99 . DP=45;AF1=1;CI95=1,1;DP4=1,1,26,10;MQ=43;PV4=0.5,0.35,0.00034,1 PL:DP:SP:GT:GQ 255,36,0:38:3:1/1:99 +chr11 5323315 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5336716 . T A 29 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=45;PV4=1,0.053,0.25,0.097 PL:DP:SP:GT:GQ 59,0,38:4:0:0/1:41 +chr11 5344561 . G A 52 . DP=11;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 85,24,0:8:0:1/1:96 +chr11 5344772 . T C 38.1 . DP=31;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 71,18,0:6:0:1/1:90 +chr11 5344847 . A G 18.2 . DP=19;AF1=0.5102;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.35,0.24,1 PL:DP:SP:GT:GQ 48,0,14:4:0:0/1:17 +chr11 5344902 . C G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,6,13;MQ=48 PL:DP:SP:GT:GQ 211,57,0:19:0:1/1:99 +chr11 5345170 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,6,8;MQ=48 PL:DP:SP:GT:GQ 198,42,0:14:0:1/1:99 +chr11 5345486 . G A 8.44 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 5357206 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 5358619 . C T 4.75 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 35,9,0:3:0:1/1:63 +chr11 5364445 . AGTGT AGTGTGT 26.5 . INDEL;DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,4,1,1;MQ=50;PV4=0.33,0.38,1,0.17 PL:DP:SP:GT:GQ 64,0,126:6:0:0/1:67 +chr11 5364450 . A G 14.2 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,6,1,6;MQ=49;PV4=0.58,0.0031,0.14,1 PL:DP:SP:GT:GQ 44,0,204:16:2:0/1:47 +chr11 5373114 . G A 42 . DP=37;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,5;MQ=49;PV4=0.29,0.0014,0.29,1 PL:DP:SP:GT:GQ 72,0,29:7:0:0/1:32 +chr11 5373242 . T G 99 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=14,19,11,5;MQ=49;PV4=0.13,1e-11,3.7e-10,1 PL:DP:SP:GT:GQ 139,0,255:49:9:0/1:99 +chr11 5373562 . C A 99 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=12,19,15,10;MQ=49;PV4=0.18,2.3e-15,0.00081,1 PL:DP:SP:GT:GQ 193,0,255:56:7:0/1:99 +chr11 5373646 . T C 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,5,5;MQ=49 PL:DP:SP:GT:GQ 149,30,0:10:0:1/1:99 +chr11 5383823 . T C 13.2 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,0.058,0.25,1 PL:DP:SP:GT:GQ 43,0,102:5:0:0/1:46 +chr11 5383991 . TATCTATAAA TA 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 5391183 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5421084 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5443442 . G C 43 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=24,3,18,0;MQ=49;PV4=0.26,4.2e-12,2.8e-09,1 PL:DP:SP:GT:GQ 73,0,255:45:6:0/1:76 +chr11 5443700 . C T 99 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=5,22,9,11;MQ=49;PV4=0.062,6.2e-21,6.4e-15,1 PL:DP:SP:GT:GQ 194,0,255:47:12:0/1:99 +chr11 5443893 . G A 99 . DP=87;AF1=0.5;CI95=0.5,0.5;DP4=17,30,15,15;MQ=49;PV4=0.25,1.2e-25,0.01,1 PL:DP:SP:GT:GQ 133,0,255:77:6:0/1:99 +chr11 5443963 . G A 79 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=9,19,3,12;MQ=49;PV4=0.49,2.8e-10,3.1e-06,1 PL:DP:SP:GT:GQ 109,0,255:43:3:0/1:99 +chr11 5444061 . G A 99 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=20,14,13,16;MQ=48;PV4=0.32,3.8e-23,7.1e-15,1 PL:DP:SP:GT:GQ 255,0,255:63:5:0/1:99 +chr11 5444136 . C T 99 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=13,28,14,7;MQ=49;PV4=0.014,8.2e-14,3e-09,0.38 PL:DP:SP:GT:GQ 176,0,255:62:18:0/1:99 +chr11 5448123 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 5462085 . G A 50 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,8,1,7;MQ=49;PV4=0.6,1.4e-07,0.00031,1 PL:DP:SP:GT:GQ 80,0,255:20:2:0/1:83 +chr11 5462255 . C G 40 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,2;MQ=48;PV4=0.47,0.26,0.16,1 PL:DP:SP:GT:GQ 70,0,39:6:3:0/1:42 +chr11 5462374 . C T 99 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=7,16,5,21;MQ=49;PV4=0.51,8.3e-16,1.2e-05,1 PL:DP:SP:GT:GQ 140,0,255:49:3:0/1:99 +chr11 5474885 . A G 6.98 . DP=31;AF1=0.4999;CI95=0.5,0.5;DP4=7,6,0,5;MQ=50;PV4=0.1,0.012,0.0089,1 PL:DP:SP:GT:GQ 36,0,255:18:10:0/1:39 +chr11 5475170 . G C 76 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=9,13,4,6;MQ=49;PV4=1,4.2e-07,1.8e-07,1 PL:DP:SP:GT:GQ 106,0,255:32:0:0/1:99 +chr11 5475506 . G A 99 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=16,12,13,8;MQ=48;PV4=0.78,2.8e-09,2.3e-07,1 PL:DP:SP:GT:GQ 219,0,255:49:1:0/1:99 +chr11 5490345 . G A 35.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 67,6,0:2:0:1/1:49 +chr11 5492037 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 5510284 . A G 70.8 . DP=55;AF1=1;CI95=0.5,1;DP4=1,0,4,5;MQ=49;PV4=1,0.32,0.3,1 PL:DP:SP:GT:GQ 103,10,0:10:0:1/1:60 +chr11 5510341 . C T 99 . DP=72;AF1=1;CI95=1,1;DP4=1,0,38,23;MQ=49;PV4=1,0.42,0.36,1 PL:DP:SP:GT:GQ 201,167,0:62:0:1/1:99 +chr11 5510423 . ATCTTCTT ATCTT 99 . INDEL;DP=82;AF1=0.5;CI95=0.5,0.5;DP4=12,19,20,15;MQ=50;PV4=0.15,3.3e-09,0.11,1 PL:DP:SP:GT:GQ 255,0,255:66:8:0/1:99 +chr11 5510497 . T C 99 . DP=55;AF1=1;CI95=1,1;DP4=1,0,8,4;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 153,23,0:13:0:1/1:92 +chr11 5510626 . T C 47.8 . DP=69;AF1=1;CI95=0.5,1;DP4=0,1,0,8;MQ=49;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 80,10,0:9:0:1/1:60 +chr11 5510928 . G A 61 . DP=16;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=49 PL:DP:SP:GT:GQ 94,33,0:11:0:1/1:99 +chr11 5518945 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 5536537 . A C 9.71 . DP=38;AF1=0.5263;CI95=0.5,1;DP4=0,1,4,0;MQ=49;PV4=0.2,0.079,1,0.31 PL:DP:SP:GT:GQ 39,0,10:5:0:0/1:13 +chr11 5546242 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 5565655 . T G 17.1 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=46;PV4=1,0.013,0.05,1 PL:DP:SP:GT:GQ 47,0,41:3:0:0/1:43 +chr11 5566112 . C T 12.3 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=14,7,3,3;MQ=49;PV4=0.64,0.0011,3.2e-05,1 PL:DP:SP:GT:GQ 42,0,255:27:2:0/1:45 +chr11 5566365 . T C 99 . DP=58;AF1=1;CI95=1,1;DP4=0,1,30,18;MQ=48;PV4=0.39,1,0.16,1 PL:DP:SP:GT:GQ 255,123,0:49:0:1/1:99 +chr11 5571567 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5573193 . A T 56 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,2,4,1;MQ=48;PV4=1,0.022,0.0013,1 PL:DP:SP:GT:GQ 86,0,231:14:0:0/1:89 +chr11 5573701 . A C 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.089,0.33,1 PL:DP:SP:GT:GQ 34,0,38:3:0:0/1:36 +chr11 5587768 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5590414 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5593467 . A G 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 5602275 . A G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=9,3,10,4;MQ=49;PV4=1,2.9e-15,0.0026,1 PL:DP:SP:GT:GQ 139,0,255:26:0:0/1:99 +chr11 5602605 . G A 99 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=23,18,17,19;MQ=48;PV4=0.5,1.2e-23,5.2e-08,1 PL:DP:SP:GT:GQ 226,0,255:77:3:0/1:99 +chr11 5602615 . A G 99 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=21,19,16,20;MQ=48;PV4=0.5,1.4e-32,3.7e-07,1 PL:DP:SP:GT:GQ 168,0,255:76:3:0/1:99 +chr11 5602679 . T C 99 . DP=77;AF1=0.5;CI95=0.5,0.5;DP4=10,12,24,23;MQ=49;PV4=0.8,2.8e-22,0.00039,1 PL:DP:SP:GT:GQ 236,0,255:69:1:0/1:99 +chr11 5602790 . A G 85 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=13,15,5,12;MQ=49;PV4=0.35,3.1e-14,0.00018,1 PL:DP:SP:GT:GQ 115,0,255:45:5:0/1:99 +chr11 5602968 . G A 99 . DP=73;AF1=1;CI95=1,1;DP4=2,1,26,37;MQ=46;PV4=0.57,1,0.00038,1 PL:DP:SP:GT:GQ 255,122,0:66:2:1/1:99 +chr11 5603163 . G A 4.13 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,5,0,2;MQ=49;PV4=1,0.099,0.059,1 PL:DP:SP:GT:GQ 32,0,139:7:0:0/1:35 +chr11 5606302 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5610043 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 5631814 . T C 28 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=7,1,0,6;MQ=49;PV4=0.0047,0.0022,0.00063,1 PL:DP:SP:GT:GQ 58,0,191:14:23:0/1:61 +chr11 5632212 . G A 48.3 . DP=61;AF1=0.543;CI95=0.5,1;DP4=1,0,1,4;MQ=48;PV4=0.33,0.21,0.15,1 PL:DP:SP:GT:GQ 78,0,8:6:0:0/1:11 +chr11 5652729 . AA AAAACACAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 5655073 . GA GATTA 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,0.11 PL:DP:SP:GT:GQ 41,0,59:3:0:0/1:44 +chr11 5664497 . A C 10.4 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,4,4,0;MQ=49;PV4=0.21,1,0.043,1 PL:DP:SP:GT:GQ 40,0,111:12:7:0/1:43 +chr11 5664831 . C A 81 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=11,9,12,2;MQ=48;PV4=0.076,3.4e-05,0.00021,1 PL:DP:SP:GT:GQ 111,0,255:34:11:0/1:99 +chr11 5664974 . T C 4.83 . DP=35;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.052,1,1 PL:DP:SP:GT:GQ 33,0,14:4:0:0/1:17 +chr11 5692804 . G C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5692817 . T G 15.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr11 5700340 . T C 17.4 . DP=9;AF1=0.5336;CI95=0.5,1;DP4=0,1,1,1;MQ=45;PV4=1,1,0.26,0.33 PL:DP:SP:GT:GQ 47,0,9:3:0:0/1:12 +chr11 5701409 . G C 93 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,16,1,6;MQ=48;PV4=1,0.02,5.1e-18,1 PL:DP:SP:GT:GQ 123,0,255:26:0:0/1:99 +chr11 5717762 . T C 99 . DP=37;AF1=1;CI95=1,1;DP4=0,1,16,13;MQ=46;PV4=0.47,0.0026,0.031,1 PL:DP:SP:GT:GQ 255,40,0:30:0:1/1:99 +chr11 5718517 . G A 4.26 . DP=21;AF1=0.5262;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 32,0,10:3:0:0/1:13 +chr11 5730248 . A G 22 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=11,0,7,0;MQ=50;PV4=1,1.5e-06,4.9e-07,0.32 PL:DP:SP:GT:GQ 52,0,217:18:0:0/1:55 +chr11 5758062 . T C 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,2,6,5;MQ=48;PV4=1,1.8e-07,0.022,1 PL:DP:SP:GT:GQ 150,0,193:17:0:0/1:99 +chr11 5758118 . A C 16.1 . DP=33;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,0,4;MQ=49;PV4=0.33,0.085,0.2,1 PL:DP:SP:GT:GQ 46,0,35:6:0:0/1:38 +chr11 5763936 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 5770234 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 5776470 . T G 17.1 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,1;MQ=48;PV4=1,0.13,0.33,1 PL:DP:SP:GT:GQ 47,0,41:3:0:0/1:43 +chr11 5786435 . T A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 5806123 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 5809548 . G A 99 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=8,19,11,11;MQ=49;PV4=0.24,1.7e-22,1.7e-05,1 PL:DP:SP:GT:GQ 205,0,255:49:6:0/1:99 +chr11 5809781 . A C 7.8 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,3;MQ=49;PV4=0.048,0.071,0.0025,0.19 PL:DP:SP:GT:GQ 37,0,160:9:13:0/1:40 +chr11 5841815 . C G 10.4 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=5,7,2,4;MQ=49;PV4=1,0.0059,0.031,1 PL:DP:SP:GT:GQ 40,0,255:18:0:0/1:43 +chr11 5841856 . C T 99 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=10,18,6,9;MQ=48;PV4=1,1.9e-17,1e-10,1 PL:DP:SP:GT:GQ 185,0,255:43:0:0/1:99 +chr11 5842356 . A G 99 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=14,6,13,3;MQ=47;PV4=0.7,0.00011,1.1e-12,1 PL:DP:SP:GT:GQ 245,0,255:36:2:0/1:99 +chr11 5842628 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5856450 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5906048 . G A 99 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=18,18,13,13;MQ=48;PV4=1,1.1e-18,3.2e-18,1 PL:DP:SP:GT:GQ 211,0,255:62:0:0/1:99 +chr11 5906143 . T C 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=17,10,17,10;MQ=49;PV4=1,1.4e-14,0.00013,1 PL:DP:SP:GT:GQ 203,0,255:54:0:0/1:99 +chr11 5906192 . A C 99 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=16,25,19,12;MQ=49;PV4=0.095,4.4e-20,1.3e-08,1 PL:DP:SP:GT:GQ 164,0,255:72:10:0/1:99 +chr11 5968728 . T C 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=8,8,12,4;MQ=46;PV4=0.27,0.0054,5.7e-13,1 PL:DP:SP:GT:GQ 255,0,255:32:6:0/1:99 +chr11 5974975 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6004453 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 6048253 . T A 6.98 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,2,0;MQ=49;PV4=1,0.084,0.14,1 PL:DP:SP:GT:GQ 36,0,74:4:0:0/1:39 +chr11 6048547 . A G 11.3 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.18,0.17,1 PL:DP:SP:GT:GQ 41,0,39:5:0:0/1:40 +chr11 6050171 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 6066014 . TG TGCTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6071141 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6220376 . G C 43.2 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,15,0;MQ=49;PV4=1,0.0019,0.36,0.033 PL:DP:SP:GT:GQ 75,8,0:16:0:1/1:56 +chr11 6221169 . A G 99 . DP=40;AF1=1;CI95=1,1;DP4=1,1,10,25;MQ=46;PV4=0.51,1,0.0035,1 PL:DP:SP:GT:GQ 255,63,0:37:3:1/1:99 +chr11 6221214 . T A 99 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=6,18,3,12;MQ=49;PV4=1,5.8e-17,5.6e-14,1 PL:DP:SP:GT:GQ 157,0,255:39:0:0/1:99 +chr11 6231558 . TC TCGC 5.79 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=8,7,0,2;MQ=50;PV4=0.47,1,1,0.12 PL:DP:SP:GT:GQ 42,0,255:17:3:0/1:45 +chr11 6234303 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6239344 . G A 29 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,4,1,1;MQ=47;PV4=1,0.029,0.00074,1 PL:DP:SP:GT:GQ 59,0,182:7:0:0/1:62 +chr11 6239739 . CTT CT 63.5 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=50;PV4=1,1.4e-11,1,1 PL:DP:SP:GT:GQ 101,0,123:14:0:0/1:99 +chr11 6240192 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6240625 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 6243804 . A G 79 . DP=49;AF1=1;CI95=0.5,1;DP4=0,1,4,5;MQ=49;PV4=1,0.37,0.23,1 PL:DP:SP:GT:GQ 111,9,0:10:0:1/1:63 +chr11 6243963 . G A 24.8 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 6256552 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6259322 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6280931 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 6281400 . T C 12 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 6291659 . G C 85 . DP=31;AF1=1;CI95=1,1;DP4=0,0,1,9;MQ=49 PL:DP:SP:GT:GQ 118,30,0:10:0:1/1:99 +chr11 6296227 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6314607 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 6315965 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 6320946 . t tCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6325724 . GGAACATTC G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6326376 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 6327259 . T TCCCTGCGGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6343118 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 6362693 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 6417004 . CTAGTAG CTAG 99 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,1,5,1;MQ=50;PV4=1,0.17,1,0.46 PL:DP:SP:GT:GQ 197,0,169:12:0:0/1:99 +chr11 6424638 . G T 3.01 . DP=17;AF1=0.4997;CI95=0.5,0.5;DP4=1,2,2,0;MQ=48;PV4=0.4,0.03,0.0063,1 PL:DP:SP:GT:GQ 30,0,116:5:4:0/1:33 +chr11 6424639 . G A 4.13 . DP=16;AF1=0.4998;CI95=0.5,0.5;DP4=3,2,3,0;MQ=49;PV4=0.46,0.09,0.41,1 PL:DP:SP:GT:GQ 32,0,136:8:3:0/1:35 +chr11 6431861 . G C 14.2 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=14,4,0,4;MQ=49;PV4=0.0096,0.031,4.7e-09,0.12 PL:DP:SP:GT:GQ 44,0,255:22:20:0/1:47 +chr11 6433008 . C CTACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6435469 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6467216 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6471845 . T G 4.13 . DP=29;AF1=0.4998;CI95=0.5,0.5;DP4=3,5,0,4;MQ=49;PV4=0.49,0.01,0.19,1 PL:DP:SP:GT:GQ 32,0,203:12:3:0/1:35 +chr11 6474957 . CA CAAA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6478006 . G A 3.54 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=3,2,3,0;MQ=48;PV4=0.46,0.028,0.042,1 PL:DP:SP:GT:GQ 31,0,142:8:3:0/1:34 +chr11 6481767 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6486727 . AC ACTC 3.26 . INDEL;DP=11;AF1=0.5012;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,23:3:0:0/1:26 +chr11 6502649 . GA GAAA 7.36 . INDEL;DP=6;AF1=0.5016;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,22:2:0:0/1:25 +chr11 6502651 . T G 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.26,0.35,0.47 PL:DP:SP:GT:GQ 31,0,38:4:0:0/1:33 +chr11 6520015 . G T 29 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,2,5,0;MQ=49;PV4=0.45,0.023,0.054,0.3 PL:DP:SP:GT:GQ 59,0,164:11:3:0/1:62 +chr11 6520164 . T A 20 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,9,1,4;MQ=49;PV4=0.33,6e-06,3.2e-05,0.29 PL:DP:SP:GT:GQ 50,0,255:24:5:0/1:53 +chr11 6527670 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 6530475 . T C 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,4;MQ=49;PV4=1,0.097,0.12,1 PL:DP:SP:GT:GQ 37,0,92:8:0:0/1:40 +chr11 6532519 . C T 11.3 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=18,12,4,5;MQ=50;PV4=0.46,4.8e-11,0.00025,1 PL:DP:SP:GT:GQ 41,0,255:39:3:0/1:44 +chr11 6541371 . C T 3.03 . DP=10;AF1=0.5037;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.089,0.11,1 PL:DP:SP:GT:GQ 30,0,18:3:0:0/1:21 +chr11 6554755 . A AAAGCCT 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 6567254 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6586882 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 6592527 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6622714 . G A 99 . DP=66;AF1=1;CI95=1,1;DP4=1,0,35,20;MQ=48;PV4=1,0.3,0.17,1 PL:DP:SP:GT:GQ 255,140,0:56:0:1/1:99 +chr11 6622857 . G A 30 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=1,22,0,18;MQ=50;PV4=1,1.6e-12,0.11,1 PL:DP:SP:GT:GQ 60,0,255:41:0:0/1:63 +chr11 6629530 . G A 83 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=5,10,4,7;MQ=49;PV4=1,2.3e-09,0.0074,0.32 PL:DP:SP:GT:GQ 113,0,255:26:0:0/1:99 +chr11 6629665 . C T 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=16,12,10,10;MQ=49;PV4=0.77,9.6e-16,6.5e-07,1 PL:DP:SP:GT:GQ 195,0,255:48:1:0/1:99 +chr11 6629729 . C G 6.98 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=2,15,0,5;MQ=48;PV4=1,0.04,0.00033,1 PL:DP:SP:GT:GQ 36,0,255:22:0:0/1:39 +chr11 6629738 . A G 18.1 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,4;MQ=48;PV4=1,0.094,0.036,1 PL:DP:SP:GT:GQ 48,0,148:11:0:0/1:51 +chr11 6629739 . T C 27 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,4;MQ=47;PV4=1,0.16,0.027,0.45 PL:DP:SP:GT:GQ 57,0,111:9:0:0/1:60 +chr11 6630028 . TCCCCC TCCCC 14.7 . INDEL;DP=10;AF1=0.505;CI95=0.5,0.5;DP4=2,0,5,0;MQ=50;PV4=1,0.44,1,1 PL:DP:SP:GT:GQ 52,0,17:7:0:0/1:20 +chr11 6630833 . G A 17.1 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=3,19,3,2;MQ=49;PV4=0.056,0.022,0.00081,0.45 PL:DP:SP:GT:GQ 47,0,255:27:13:0/1:50 +chr11 6631711 . C G 4.13 . DP=16;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,2,0;MQ=48;PV4=1,0.044,0.00021,1 PL:DP:SP:GT:GQ 32,0,113:5:0:0/1:35 +chr11 6632083 . A C 20 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 6632348 . c cGA 26.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=50;PV4=0.33,1,1,0.18 PL:DP:SP:GT:GQ 64,0,71:4:5:0/1:66 +chr11 6632857 . A T 64 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=9,0,6,0;MQ=48;PV4=1,0.16,9.9e-05,1 PL:DP:SP:GT:GQ 94,0,162:15:0:0/1:97 +chr11 6636106 . T A 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=13,14,5,11;MQ=49;PV4=0.35,5.4e-08,1.3e-05,1 PL:DP:SP:GT:GQ 166,0,255:43:5:0/1:99 +chr11 6637504 . G A 85 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=13,1,22,0;MQ=45;PV4=0.39,8.6e-16,0.012,0.22 PL:DP:SP:GT:GQ 115,0,242:36:0:0/1:99 +chr11 6637518 . A G 99 . DP=43;AF1=1;CI95=1,1;DP4=1,1,31,4;MQ=45;PV4=0.26,1,0.4,1 PL:DP:SP:GT:GQ 238,76,0:37:6:1/1:99 +chr11 6638936 . T G 8.64 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=14,1,0,5;MQ=49;PV4=0.00039,2.2e-06,0.0021,0.36 PL:DP:SP:GT:GQ 38,0,254:20:34:0/1:41 +chr11 6638937 . T G 11.3 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=14,6,0,7;MQ=49;PV4=0.0019,0.0015,0.11,1 PL:DP:SP:GT:GQ 41,0,255:27:27:0/1:44 +chr11 6688033 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6694185 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 6706208 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6730609 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 6749584 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 6789929 . C A 29 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=8,4,5,1;MQ=48;PV4=0.61,0.0011,0.048,1 PL:DP:SP:GT:GQ 59,0,255:18:2:0/1:62 +chr11 6790106 . T C 99 . DP=18;AF1=1;CI95=1,1;DP4=1,0,12,3;MQ=47;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 190,31,0:16:0:1/1:99 +chr11 6798053 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 6816778 . A G 80 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,5;MQ=49;PV4=1,0.00099,1,1 PL:DP:SP:GT:GQ 110,0,42:11:0:0/1:45 +chr11 6816875 . G A 99 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=9,24,15,11;MQ=49;PV4=0.032,2e-18,0.00067,0.18 PL:DP:SP:GT:GQ 176,0,255:59:15:0/1:99 +chr11 6844598 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6858980 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 6864047 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6865648 . A G 99 . DP=24;AF1=1;CI95=1,1;DP4=1,0,14,4;MQ=47;PV4=1,0.13,0.2,1 PL:DP:SP:GT:GQ 191,25,0:19:0:1/1:99 +chr11 6865675 . A ACG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr11 6865758 . T C 44 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,7;MQ=50;PV4=0.38,0.013,0.28,1 PL:DP:SP:GT:GQ 74,0,42:10:4:0/1:45 +chr11 6865831 . A G 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,4,5;MQ=44 PL:DP:SP:GT:GQ 255,27,0:9:0:1/1:99 +chr11 6867385 . A G 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,1;MQ=46;PV4=1,0.11,0.19,0.17 PL:DP:SP:GT:GQ 31,0,87:3:0:0/1:34 +chr11 6867950 . G A 43.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 76,15,0:5:0:1/1:75 +chr11 6891385 . G A 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=5,3,3,10;MQ=46;PV4=0.16,0.079,1.2e-05,1 PL:DP:SP:GT:GQ 234,0,209:21:8:0/1:99 +chr11 6891704 . T C 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=1,11,6,7;MQ=49;PV4=0.073,0.0019,0.0065,1 PL:DP:SP:GT:GQ 141,0,214:25:11:0/1:99 +chr11 6898196 . C T 6.2 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,0,4;MQ=49;PV4=1,0.055,0.22,1 PL:DP:SP:GT:GQ 35,0,111:8:0:0/1:38 +chr11 6908515 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 6913127 . A G 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=4,15,2,16;MQ=48;PV4=0.66,6.9e-12,3e-13,1 PL:DP:SP:GT:GQ 180,0,255:37:2:0/1:99 +chr11 6913244 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,1,15,12;MQ=49;PV4=0.46,0.0014,1,1 PL:DP:SP:GT:GQ 170,48,0:28:0:1/1:99 +chr11 6933393 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6942229 . A C 24 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,2,5,0;MQ=48;PV4=0.11,0.012,1,1 PL:DP:SP:GT:GQ 54,0,84:8:10:0/1:57 +chr11 6942245 . T G 18.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,2;MQ=47;PV4=1,0.017,0.025,1 PL:DP:SP:GT:GQ 48,0,106:6:0:0/1:51 +chr11 6942695 . C T 99 . DP=69;AF1=0.5;CI95=0.5,0.5;DP4=14,19,16,14;MQ=47;PV4=0.45,0.13,5.8e-58,1 PL:DP:SP:GT:GQ 255,0,255:63:3:0/1:99 +chr11 6943254 . C T 99 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=3,8,0,9;MQ=47;PV4=0.22,0.00012,1.4e-15,1 PL:DP:SP:GT:GQ 162,0,255:20:7:0/1:99 +chr11 6947761 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 6962945 . C G 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.41,0.05,0.17 PL:DP:SP:GT:GQ 41,0,42:6:0:0/1:41 +chr11 6969478 . aga aGACTga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6976831 . GG GGGAG 27.6 . INDEL;DP=9;AF1=0.5129;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 65,0,13:3:0:0/1:16 +chr11 6976988 . A T 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,20,12;MQ=46 PL:DP:SP:GT:GQ 255,96,0:32:0:1/1:99 +chr11 6977241 . T A 7.8 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,3;MQ=49;PV4=0.1,8.2e-06,0.058,0.4 PL:DP:SP:GT:GQ 37,0,110:6:10:0/1:40 +chr11 7020522 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7022160 . A G 51 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=0,5,3,3;MQ=47;PV4=0.18,0.12,1,0.11 PL:DP:SP:GT:GQ 81,0,94:11:7:0/1:84 +chr11 7022531 . A T 6.98 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,1,1;MQ=47;PV4=1,0.47,0.055,1 PL:DP:SP:GT:GQ 36,0,60:5:0:0/1:39 +chr11 7022717 . T C 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=44 PL:DP:SP:GT:GQ 133,12,0:4:0:1/1:72 +chr11 7059960 . A C 28.3 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 61,15,0:5:0:1/1:75 +chr11 7061087 . CCG CCGCG 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr11 7063755 . C T 99 . DP=55;AF1=1;CI95=1,1;DP4=0,1,16,7;MQ=48;PV4=0.33,0.19,0.3,1 PL:DP:SP:GT:GQ 189,47,0:24:0:1/1:99 +chr11 7065289 . C A 93 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 126,33,0:11:0:1/1:99 +chr11 7067854 . A T 18.2 . DP=26;AF1=0.5207;CI95=0.5,1;DP4=2,0,7,0;MQ=48;PV4=1,1,0.12,1 PL:DP:SP:GT:GQ 48,0,11:9:0:0/1:14 +chr11 7070866 . G A 56.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 89,18,0:6:0:1/1:90 +chr11 7073948 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 7079038 . G A 99 . DP=45;AF1=0.9998;CI95=0.5,1;DP4=2,1,9,4;MQ=49;PV4=1,1,0.076,1 PL:DP:SP:GT:GQ 129,2,0:16:0:1/1:37 +chr11 7081336 . C G 6.98 . DP=39;AF1=0.4999;CI95=0.5,0.5;DP4=0,20,0,6;MQ=49;PV4=1,0.48,4.8e-13,1 PL:DP:SP:GT:GQ 36,0,109:26:0:0/1:39 +chr11 7083830 . T A 18.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.36,0.00094,1 PL:DP:SP:GT:GQ 48,0,80:7:0:0/1:51 +chr11 7110363 . G A 23 . DP=17;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,4,0;MQ=49;PV4=1,0.1,0.21,1 PL:DP:SP:GT:GQ 53,0,30:6:0:0/1:33 +chr11 7111153 . C A 30 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,7;MQ=49;PV4=0.52,0.011,0.014,1 PL:DP:SP:GT:GQ 60,0,238:20:3:0/1:63 +chr11 7136880 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 7174213 . GG GGGTTACGGATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7216819 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 7288017 . A G 4.8 . DP=2;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,16:2:0:0/1:19 +chr11 7321052 . T A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 7324475 . T C 38.5 . DP=33;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 71,12,0:4:0:1/1:72 +chr11 7325007 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7335198 . G A 99 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,13;MQ=46;PV4=1,0.012,3.7e-07,1 PL:DP:SP:GT:GQ 139,0,123:19:0:0/1:99 +chr11 7340287 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7362244 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 7363114 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7389137 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 7391525 . G GGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7394962 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7399435 . C CTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7439093 . G T 6.98 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,0.33,0.2,0.25 PL:DP:SP:GT:GQ 36,0,89:6:0:0/1:39 +chr11 7439095 . A G 15.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.03,1,1 PL:DP:SP:GT:GQ 45,0,53:5:0:0/1:47 +chr11 7441737 . T C 87 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=15,14,10,6;MQ=50;PV4=0.54,5.6e-10,0.0026,1 PL:DP:SP:GT:GQ 117,0,255:45:3:0/1:99 +chr11 7441952 . A G 61 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,11;MQ=49;PV4=1,1e-10,0.027,0.36 PL:DP:SP:GT:GQ 91,0,216:22:0:0/1:94 +chr11 7442808 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 7444012 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 7456084 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 7476210 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 7512505 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 7532293 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 7533245 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7586676 . CTTCTT C 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 7607256 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7614492 . A G 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,10;MQ=46;PV4=1,0.084,1.8e-13,1 PL:DP:SP:GT:GQ 175,0,204:20:0:0/1:99 +chr11 7622240 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 7628899 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 7632854 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 7638465 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7655822 . C G,T 4.13 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 49,20,32,17,0,32:2:0:1/1:41 +chr11 7659613 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7660921 . C T 30.3 . DP=7;AF1=0.543;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 60,0,8:6:0:0/1:11 +chr11 7662732 . C T 99 . DP=48;AF1=1;CI95=1,1;DP4=0,1,19,23;MQ=44;PV4=1,1,0.00047,1 PL:DP:SP:GT:GQ 255,110,0:43:0:1/1:99 +chr11 7663726 . T C 7.59 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 7670160 . T C 82 . DP=15;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=49 PL:DP:SP:GT:GQ 115,39,0:13:0:1/1:99 +chr11 7670305 . C A 61.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 94,12,0:4:0:1/1:72 +chr11 7670734 . G T 35.2 . DP=14;AF1=0.7303;CI95=0.5,1;DP4=1,0,7,0;MQ=45;PV4=1,0.21,1,0.18 PL:DP:SP:GT:GQ 64,0,2:8:0:0/1:3 +chr11 7670740 . T C 5.46 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=48;PV4=1,0.01,0.1,1 PL:DP:SP:GT:GQ 34,0,118:8:0:0/1:37 +chr11 7670758 . TTC TTCTCTACCTATCCTC 95.5 . INDEL;DP=17;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=50 PL:DP:SP:GT:GQ 136,27,0:9:0:1/1:99 +chr11 7671974 . C T 59.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 92,15,0:5:0:1/1:75 +chr11 7672068 . C G 23 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=12,6,6,0;MQ=49;PV4=0.28,0.066,0.00046,1 PL:DP:SP:GT:GQ 53,0,255:24:6:0/1:56 +chr11 7672738 . G GAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7673015 . G A 86.1 . DP=45;AF1=1;CI95=0.5,1;DP4=0,1,9,2;MQ=48;PV4=0.25,0.039,0.2,1 PL:DP:SP:GT:GQ 117,5,0:12:0:1/1:46 +chr11 7686596 . G A 15.1 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.14,0.21,0.16 PL:DP:SP:GT:GQ 45,0,72:4:0:0/1:48 +chr11 7686601 . GGTGT GGTGTGTGT 4.91 . INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 7686602 . GTGTT GTGTTTGTT 99 . INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 142,15,0:5:0:1/1:75 +chr11 7686858 . C G 74.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 107,18,0:6:0:1/1:90 +chr11 7687669 . A C 19 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr11 7687715 . T C 87.5 . DP=28;AF1=0.9998;CI95=0.5,1;DP4=0,1,6,3;MQ=48;PV4=0.4,0.19,0.24,1 PL:DP:SP:GT:GQ 117,2,0:10:0:1/1:37 +chr11 7689633 . A C 63 . DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 96,27,0:9:0:1/1:99 +chr11 7702302 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 7738420 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 7746198 . AAAC A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 7752050 . t tGTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7768437 . C T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr11 7846699 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 7856147 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 7906509 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 7925521 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7954136 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8009256 . C T 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.18,0.031,0.2 PL:DP:SP:GT:GQ 30,0,66:7:0:0/1:33 +chr11 8013450 . C A 15.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,0.025,0.11,1 PL:DP:SP:GT:GQ 45,0,58:5:0:0/1:48 +chr11 8016730 . T C 55 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=1,19,0,8;MQ=49;PV4=1,4.2e-07,1.1e-05,0.42 PL:DP:SP:GT:GQ 85,0,255:28:0:0/1:88 +chr11 8026448 . t tCGTTGTG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 8029110 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 8043246 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8052996 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8065357 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 8088973 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 8089357 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8095414 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 8118185 . C G 7.59 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 8118200 . C A 3.41 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 8118472 . T C 64.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 97,12,0:4:0:1/1:72 +chr11 8119063 . A G 19.1 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,0,3;MQ=46;PV4=0.4,1,1,1 PL:DP:SP:GT:GQ 49,0,33:5:0:0/1:36 +chr11 8121302 . g gTCATCAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8122234 . G A 53.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 86,15,0:5:0:1/1:75 +chr11 8122414 . G A 9.52 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=9,0,4,0;MQ=49;PV4=1,0.0019,0.0093,1 PL:DP:SP:GT:GQ 39,0,195:13:0:0/1:42 +chr11 8123005 . CTCTGTCTGT CTCTGT 99 . INDEL;DP=46;AF1=0.5;CI95=0.5,0.5;DP4=21,5,10,5;MQ=50;PV4=0.45,0.11,1,1 PL:DP:SP:GT:GQ 255,0,255:41:3:0/1:99 +chr11 8133105 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8137860 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8146377 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8148184 . A G 19.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,2,5,0;MQ=48;PV4=0.048,2.1e-06,0.13,1 PL:DP:SP:GT:GQ 49,0,73:7:13:0/1:52 +chr11 8152141 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8159892 . G T 32 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,19,1,12;MQ=50;PV4=1,7e-10,0.042,1 PL:DP:SP:GT:GQ 62,0,255:34:0:0/1:65 +chr11 8174263 . aa aAAGTGGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8183971 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 8229632 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8232380 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8232881 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8241868 . c cAGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8251153 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8270791 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 8318344 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8331442 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 8340619 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 8343009 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 8354709 . AATCATA AA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8372885 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8378354 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8379857 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 8404115 . G GAACCATA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 8406279 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8439534 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8528082 . g gTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8539838 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8608406 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8615585 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8615590 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8623642 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8663345 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8665546 . GTT GTTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8717942 . A G 5.46 . DP=28;AF1=0.4999;CI95=0.5,0.5;DP4=6,8,5,0;MQ=50;PV4=0.045,0.021,7.4e-05,0.26 PL:DP:SP:GT:GQ 34,0,255:19:14:0/1:37 +chr11 8720615 . C A 58 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,15;MQ=49;PV4=1,6.7e-16,0.00016,0.34 PL:DP:SP:GT:GQ 88,0,223:28:0:0/1:91 +chr11 8734530 . GGAG GGAGTTGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8735662 . G A 40.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:DP:SP:GT:GQ 73,12,0:4:0:1/1:72 +chr11 8741844 . CCC CCCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8753618 . C CAGCTGAGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8780596 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8792966 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8801021 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 8818535 . AC ACGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8820992 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 8828414 . T C 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 8835963 . ttc tTCTGAACTGtc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8843914 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8847949 . C CCGGGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8850502 . ggtgtgtgtgtgggtgtgtgtgtg ggtgtgtgtgggtgtgtgtgtg 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 8852527 . A AGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8857547 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 8895785 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8918499 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8924262 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8934101 . A G 17.2 . DP=26;AF1=0.508;CI95=0.5,0.5;DP4=0,2,0,7;MQ=50;PV4=1,0.029,1,1 PL:DP:SP:GT:GQ 47,0,15:9:0:0/1:18 +chr11 8938934 . C T 80 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=1,15,1,14;MQ=49;PV4=1,1e-14,0.0047,1 PL:DP:SP:GT:GQ 110,0,255:31:0:0/1:99 +chr11 8942999 . G A 99 . DP=55;AF1=1;CI95=1,1;DP4=1,0,23,16;MQ=46;PV4=1,1,0.022,1 PL:DP:SP:GT:GQ 255,93,0:40:0:1/1:99 +chr11 8943107 . TGA TGAGGA 3.25 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=49;PV4=1,1,1,0.4 PL:DP:SP:GT:GQ 38,0,37:4:0:0/1:37 +chr11 8944689 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8947021 . A G 81.4 . DP=27;AF1=0.5554;CI95=0.5,1;DP4=2,0,7,2;MQ=48;PV4=1,1,0.091,1 PL:DP:SP:GT:GQ 111,0,7:11:0:0/1:10 +chr11 8947179 . G A 99 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,4,6,3;MQ=46;PV4=0.27,0.0019,5.4e-05,0.16 PL:DP:SP:GT:GQ 223,0,165:14:6:0/1:99 +chr11 8948680 . A T 82 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=1,18,2,10;MQ=49;PV4=0.54,5.9e-10,0.11,0.1 PL:DP:SP:GT:GQ 112,0,255:31:3:0/1:99 +chr11 8950875 . A T 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,1,4,0;MQ=48;PV4=1,0.29,0.016,1 PL:DP:SP:GT:GQ 55,0,76:8:0:0/1:58 +chr11 8950877 . G A 3.01 . DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=5,1,3,0;MQ=49;PV4=1,0.15,0.0026,0.36 PL:DP:SP:GT:GQ 30,0,127:9:0:0/1:33 +chr11 8959370 . G A 97 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,5,2,8;MQ=49;PV4=0.61,0.0041,0.01,1 PL:DP:SP:GT:GQ 127,0,208:18:2:0/1:99 +chr11 8959545 . C A 17.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,0;MQ=49;PV4=0.4,0.23,0.14,1 PL:DP:SP:GT:GQ 47,0,46:5:0:0/1:46 +chr11 8973964 . tt tTCCTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8975073 . TTG TTGTCCAACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8986638 . CC CCGCGTCTCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9005036 . T A 42.1 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 75,18,0:6:0:1/1:90 +chr11 9015747 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 9024838 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9040950 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9047179 . C A 25 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,0;MQ=48;PV4=1,0.0046,0.052,1 PL:DP:SP:GT:GQ 55,0,60:8:0:0/1:57 +chr11 9049076 . T A 5.46 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=10,1,0,5;MQ=49;PV4=0.0014,5.4e-06,0.14,0.029 PL:DP:SP:GT:GQ 34,0,236:16:29:0/1:37 +chr11 9051406 . T C 77 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=25,6,9,3;MQ=49;PV4=0.69,7.9e-07,2.5e-17,0.38 PL:DP:SP:GT:GQ 107,0,255:43:2:0/1:99 +chr11 9052423 . A C 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,9,4;MQ=46 PL:DP:SP:GT:GQ 222,39,0:13:0:1/1:99 +chr11 9055222 . A C 4.13 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=4,0,0,4;MQ=48;PV4=0.029,0.00083,0.11,1 PL:DP:SP:GT:GQ 32,0,126:8:15:0/1:35 +chr11 9063242 . a aGTGTAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9069046 . G A 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=5,19,5,14;MQ=49;PV4=0.73,4.7e-09,3.3e-06,1 PL:DP:SP:GT:GQ 192,0,255:43:1:0/1:99 +chr11 9074362 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 9167399 . T C 32 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 +chr11 9169784 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9189080 . a aACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9204962 . t tAGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9206899 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9229146 . C T 18.1 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=18,6,0,10;MQ=49;PV4=6.1e-05,1.5e-05,0.00078,1 PL:DP:SP:GT:GQ 48,0,255:34:42:0/1:51 +chr11 9241223 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 9308173 . T C 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,1;MQ=48;PV4=1,0.092,0,0.42 PL:DP:SP:GT:GQ 31,0,114:4:0:0/1:34 +chr11 9309405 . A G 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=46 PL:DP:SP:GT:GQ 151,33,0:11:0:1/1:99 +chr11 9311868 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9332929 . A G 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,1,0;MQ=48;PV4=1,0.41,0,0.35 PL:DP:SP:GT:GQ 31,0,75:3:0:0/1:34 +chr11 9339285 . c cGAAGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9357741 . AGGT A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 9370633 . A G 99 . DP=54;AF1=1;CI95=1,1;DP4=0,0,20,30;MQ=24 PL:DP:SP:GT:GQ 193,151,0:50:0:1/1:99 +chr11 9371127 . A C 4.77 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=42;PV4=1,0.23,1,0.088 PL:DP:SP:GT:GQ 33,0,32:4:0:0/1:32 +chr11 9435988 . AA AACA 4.42 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 9435995 . TAG TAGAAG 7.35 . INDEL;DP=8;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,27:2:0:0/1:30 +chr11 9441939 . A G 21 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,4,0;MQ=49;PV4=0.33,0.05,1,0.37 PL:DP:SP:GT:GQ 51,0,35:6:0:0/1:38 +chr11 9446588 . T A 3.01 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=2,2,0,2;MQ=49;PV4=0.47,0.061,0.12,1 PL:DP:SP:GT:GQ 30,0,141:6:3:0/1:33 +chr11 9446687 . A T 5.46 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,4,0;MQ=49;PV4=0.43,0.16,0.053,1 PL:DP:SP:GT:GQ 34,0,66:7:0:0/1:37 +chr11 9451406 . T G 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,0.39,0.008,0.39 PL:DP:SP:GT:GQ 36,0,67:5:0:0/1:39 +chr11 9458325 . t tCGAGATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9463622 . T A 8.65 . DP=14;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,3,0;MQ=49;PV4=0.4,0.028,0.14,1 PL:DP:SP:GT:GQ 38,0,32:5:0:0/1:34 +chr11 9463635 . A C,G 4.99 . DP=10;AF1=0.5429;CI95=0.5,1;DP4=0,1,0,3;MQ=47;PV4=1,1,0.16,0.11 PL:DP:SP:GT:GQ 37,4,24,12,0,36:4:0:0/1:11 +chr11 9466625 . A C 3.01 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,1,0.00066,1 PL:DP:SP:GT:GQ 30,0,46:6:0:0/1:33 +chr11 9495606 . T C 6.98 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,0.46,0.19,1 PL:DP:SP:GT:GQ 36,0,38:6:0:0/1:37 +chr11 9500183 . T TCCATTGC 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,74:3:0:0/1:44 +chr11 9571645 . tgag t 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 9627797 . A C 10.4 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,0;MQ=39;PV4=0.1,5.7e-05,0.46,1 PL:DP:SP:GT:GQ 40,0,81:6:10:0/1:43 +chr11 9640491 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9642157 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 9667968 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 9675903 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9676816 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 9698549 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9706025 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9714049 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9714060 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 9715646 . T C 46 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=11,0,5,0;MQ=48;PV4=1,1.4e-08,3e-05,1 PL:DP:SP:GT:GQ 76,0,224:16:0:0/1:79 +chr11 9715853 . T G 35 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,3,0,7;MQ=48;PV4=0.07,0.089,0.07,1 PL:DP:SP:GT:GQ 65,0,130:14:12:0/1:68 +chr11 9715853 . TT TTTGT 4.42 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=3,3,0,4;MQ=50;PV4=0.2,0.012,1,0.095 PL:DP:SP:GT:GQ 40,0,109:10:7:0/1:43 +chr11 9746201 . G A 5.46 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,0.024,0.14,0.48 PL:DP:SP:GT:GQ 34,0,117:7:0:0/1:37 +chr11 9754221 . C T 99 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,5;MQ=44;PV4=1,0.028,0,0.29 PL:DP:SP:GT:GQ 133,0,32:6:0:0/1:35 +chr11 9754282 . G GCCAT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9763900 . t tTGGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9769747 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9780626 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9781084 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9783948 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9789816 . TGCAG T 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 9804747 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9846251 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 9861376 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9864131 . A G,T 10.1 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,1,0.089,1 PL:DP:SP:GT:GQ 55,16,34,21,0,46:6:0:0/1:7 +chr11 9867378 . C T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,43:2:0:0/1:39 +chr11 9875329 . A C 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 9875353 . G T 87.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=42 PL:DP:SP:GT:GQ 120,15,0:5:0:1/1:75 +chr11 9895006 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 9917768 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9980357 . A C 12 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 9980501 . T C 67 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,3,1,9;MQ=49;PV4=0.24,3e-09,0.17,1 PL:DP:SP:GT:GQ 97,0,177:15:6:0/1:99 +chr11 9981297 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 9983182 . AGG AGGAGCAGG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 9983385 . G GGACA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 10024311 . A G 36 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,8;MQ=49;PV4=1,4.2e-05,0.27,1 PL:DP:SP:GT:GQ 66,0,180:16:0:0/1:69 +chr11 10028268 . cact cACTact 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10033205 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 10039286 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 10088587 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 10097633 . g gAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10102418 . t tCTCCACG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 10107306 . T TCATAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10115584 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 10120473 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 10121566 . c cTTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10220915 . a aCAGTCT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 10221398 . g gAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10274693 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 10292683 . t tAGAGA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 10298387 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 10329086 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10332960 . C G 5.47 . DP=2;AF1=0.5019;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,21:2:0:0/1:24 +chr11 10393395 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 10420651 . ccat c 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 10424942 . CC CCTGGGGCTTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10432979 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 10462245 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 10462756 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10469754 . C T 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=38 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 10478360 . C G 3.55 . DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,26:2:0:0/1:28 +chr11 10487734 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 10500323 . CAG CAGTAAG 7.41 . INDEL;DP=3;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,15:2:0:0/1:18 +chr11 10508716 . G C 13.2 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,4,0;MQ=49;PV4=0.43,0.025,0.11,1 PL:DP:SP:GT:GQ 43,0,97:7:0:0/1:46 +chr11 10508938 . T C 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,3,10;MQ=48;PV4=0.29,1,0.23,1 PL:DP:SP:GT:GQ 148,22,0:14:0:1/1:88 +chr11 10518519 . AG AGTG 5.08 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,0.41 PL:DP:SP:GT:GQ 41,0,54:3:0:0/1:44 +chr11 10518521 . C T 99 . DP=36;AF1=1;CI95=1,1;DP4=1,0,5,22;MQ=47;PV4=0.21,0.43,0.12,1 PL:DP:SP:GT:GQ 227,58,0:28:0:1/1:99 +chr11 10518585 . A G 63 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,9;MQ=48;PV4=1,1.2e-05,0.26,1 PL:DP:SP:GT:GQ 93,0,168:16:0:0/1:96 +chr11 10518615 . G A 21 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=46;PV4=1,0.0034,1,0.27 PL:DP:SP:GT:GQ 51,0,94:6:0:0/1:54 +chr11 10521764 . T C 99 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=11,10,10,22;MQ=48;PV4=0.16,3.5e-17,1.1e-07,1 PL:DP:SP:GT:GQ 253,0,255:53:8:0/1:99 +chr11 10521850 . G A 42 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,5;MQ=45;PV4=1,0.00027,0.0043,1 PL:DP:SP:GT:GQ 72,0,181:12:0:0/1:75 +chr11 10526060 . C T 22 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 10527193 . ACATGGCTATAG A 74.5 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=50;PV4=1,0.42,1,1 PL:DP:SP:GT:GQ 112,0,61:5:0:0/1:64 +chr11 10541889 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 10547705 . TC TCGTAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10564729 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 10612204 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10644883 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 10653005 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10727706 . A ACTAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10759351 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10778276 . A G 36 . DP=14;AF1=0.6671;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 65,0,3:6:0:0/1:5 +chr11 10778277 . T C 26.5 . DP=13;AF1=0.5718;CI95=0.5,1;DP4=1,0,4,0;MQ=47;PV4=1,1,0.42,0.16 PL:DP:SP:GT:GQ 56,0,6:5:0:0/1:8 +chr11 10779564 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 10780746 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 10786142 . C T 79 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=9,6,4,4;MQ=49;PV4=0.69,1.3e-06,0.001,1 PL:DP:SP:GT:GQ 109,0,255:23:2:0/1:99 +chr11 10794702 . A T 4.77 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=8,2,0,4;MQ=49;PV4=0.015,0.01,0.027,0.36 PL:DP:SP:GT:GQ 33,0,225:14:18:0/1:36 +chr11 10795752 . T C 35 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,1,5,0;MQ=49;PV4=0.44,0.082,0.043,0.00018 PL:DP:SP:GT:GQ 65,0,97:9:0:0/1:68 +chr11 10804728 . G GGC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 10806952 . TTG TTGAGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10821931 . AAT AATCGAT 5.08 . INDEL;DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,8,3,0;MQ=50;PV4=0.0061,1,1,0.3 PL:DP:SP:GT:GQ 41,0,192:11:22:0/1:44 +chr11 10821932 . AT ATCGGT 5.08 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,8,2,0;MQ=50;PV4=0.022,1,1,0.33 PL:DP:SP:GT:GQ 41,0,196:10:17:0/1:44 +chr11 10822350 . C T 99 . DP=30;AF1=1;CI95=1,1;DP4=0,1,3,21;MQ=48;PV4=1,0.13,0.2,1 PL:DP:SP:GT:GQ 187,44,0:25:0:1/1:99 +chr11 10823079 . T C 73 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,3;MQ=47;PV4=1,0.03,0.24,1 PL:DP:SP:GT:GQ 103,0,101:8:0:0/1:99 +chr11 10823576 . C CCTAA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10823815 . C T 99 . DP=57;AF1=1;CI95=1,1;DP4=0,0,36,10;MQ=47 PL:DP:SP:GT:GQ 255,138,0:46:0:1/1:99 +chr11 10824540 . G A 13.2 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr11 10827400 . AACACA AACA 99 . INDEL;DP=46;AF1=0.5;CI95=0.5,0.5;DP4=26,0,12,1;MQ=50;PV4=0.33,1,1,0.2 PL:DP:SP:GT:GQ 221,0,197:39:0:0/1:99 +chr11 10828490 . TAA TAAA 99 . INDEL;DP=20;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=50 PL:DP:SP:GT:GQ 196,48,0:16:0:1/1:99 +chr11 10846829 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 10854507 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 10939918 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 10970977 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 10979189 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11024353 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11026169 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11029458 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11059530 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11064026 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11078205 . T TGAA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 11116255 . G C 6.22 . DP=2;AF1=0.5039;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,18:2:0:0/1:21 +chr11 11120078 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11122616 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11122635 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11131729 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11136076 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 11154974 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 11158907 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 11158984 . CT CAGAT 4.42 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,1,1,0.077 PL:DP:SP:GT:GQ 40,0,46:4:0:0/1:42 +chr11 11158985 . TCA TCAGAACA 99 . INDEL;DP=13;AF1=0.5554;CI95=0.5,1;DP4=1,1,6,1;MQ=50;PV4=0.42,1,1,1 PL:DP:SP:GT:GQ 140,0,7:9:4:0/1:10 +chr11 11158986 . CA CAGAAGA 99 . INDEL;DP=13;AF1=0.5554;CI95=0.5,1;DP4=1,1,6,1;MQ=50;PV4=0.42,1,1,1 PL:DP:SP:GT:GQ 215,0,7:9:4:0/1:10 +chr11 11163997 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11171659 . T C 15.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr11 11178831 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11196788 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 11199460 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11199497 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 11225492 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11227340 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 11234280 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 11239835 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11282677 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 11286683 . TG TGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11289618 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 11292700 . G C 60.8 . DP=23;AF1=0.6243;CI95=0.5,1;DP4=1,0,4,2;MQ=47;PV4=1,0.36,0.2,1 PL:DP:SP:GT:GQ 90,0,4:7:0:0/1:6 +chr11 11294253 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 11300700 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11302848 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11314538 . C T 99 . DP=31;AF1=1;CI95=1,1;DP4=1,1,19,3;MQ=46;PV4=0.31,1,0.0066,1 PL:DP:SP:GT:GQ 212,25,0:24:5:1/1:99 +chr11 11327532 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 11334453 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11338045 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11340232 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11342861 . g gTC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 11348828 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 11353885 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11354346 . T C 75.6 . DP=41;AF1=1;CI95=0.5,1;DP4=1,1,1,14;MQ=49;PV4=0.23,1,0.17,1 PL:DP:SP:GT:GQ 108,11,0:17:6:1/1:66 +chr11 11373633 . GG GGTG 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11373635 . C T 46 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,1;MQ=46;PV4=1,0.077,0.065,1 PL:DP:SP:GT:GQ 76,0,37:4:0:0/1:40 +chr11 11373960 . C T 9.52 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,6,1,1;MQ=48;PV4=1,0.0074,0.00029,1 PL:DP:SP:GT:GQ 39,0,255:11:0:0/1:42 +chr11 11374013 . CAAT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11374283 . T G 5.44 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 36,9,0:3:0:1/1:63 +chr11 11393966 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11398211 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11430166 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11449874 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 11454381 . A G 8.64 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,3;MQ=49;PV4=1,0.46,0.0026,1 PL:DP:SP:GT:GQ 38,0,164:14:0:0/1:41 +chr11 11463016 . CTG CTGTCACTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11509392 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11519895 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11525929 . T TCCCCAAAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11528897 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11529012 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11531002 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11531645 . C CCT 6.55 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,44:2:0:0/1:43 +chr11 11535913 . C T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11590165 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11592878 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11603319 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 11635648 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11660267 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11664363 . A AAGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11699799 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11704024 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11707001 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11715262 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 11752727 . G C 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11752753 . A T 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11752911 . A AAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11783148 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 11784295 . A C 3.02 . DP=3;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,22:2:0:0/1:24 +chr11 11818115 . C CTTCAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11850269 . a aGACTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11905993 . C T 57 . DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=50 PL:DP:SP:GT:GQ 90,48,0:16:0:1/1:99 +chr11 11927259 . A T 6.2 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,29:2:0:0/1:31 +chr11 11944448 . AT ATCCTT 12.7 . INDEL;DP=9;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11951685 . T C 8.64 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,0.049,0.036,0.13 PL:DP:SP:GT:GQ 38,0,85:8:0:0/1:41 +chr11 11952367 . C G 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 11964708 . TC TCCC 13.7 . INDEL;DP=6;AF1=0.5032;CI95=0.5,0.5;DP4=0,2,0,2;MQ=50;PV4=1,1,1,0.084 PL:DP:SP:GT:GQ 51,0,19:4:0:0/1:22 +chr11 11969406 . A G 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 11969439 . CAGAG CAG 21.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=8,0,2,0;MQ=50;PV4=1,0.25,1,1 PL:DP:SP:GT:GQ 59,0,193:10:0:0/1:62 +chr11 11970003 . A C 18.1 . DP=11;AF1=0.501;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.074,1 PL:DP:SP:GT:GQ 48,0,24:5:0:0/1:27 +chr11 11971506 . T G 32 . DP=15;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,3;MQ=47;PV4=0.4,0.014,0.23,0.49 PL:DP:SP:GT:GQ 62,0,29:5:0:0/1:32 +chr11 11986427 . A ACGACGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12000058 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 12006092 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 12020972 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 12026989 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12050261 . GT GTCCT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 12089811 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 12149365 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 12173049 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 12173352 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12197072 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 12217913 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12219606 . G C 13 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 12242008 . A G 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,1,0;MQ=48;PV4=1,0.22,0,0.49 PL:DP:SP:GT:GQ 32,0,90:3:0:0/1:35 +chr11 12248586 . A T 13.2 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=9,5,6,0;MQ=49;PV4=0.26,0.13,4.6e-08,1 PL:DP:SP:GT:GQ 43,0,230:20:6:0/1:46 +chr11 12265542 . A G 99 . DP=61;AF1=0.5;CI95=0.5,0.5;DP4=18,15,10,13;MQ=47;PV4=0.59,2.4e-09,1.3e-30,1 PL:DP:SP:GT:GQ 255,0,255:56:2:0/1:99 +chr11 12279978 . G C 15.2 . DP=6;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,0.26,0.45,1 PL:DP:SP:GT:GQ 45,0,14:4:0:0/1:17 +chr11 12289337 . cag cAGTGGTGGag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12296117 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 12309120 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 12313887 . C G 91 . DP=26;AF1=1;CI95=1,1;DP4=0,0,2,6;MQ=48 PL:DP:SP:GT:GQ 124,24,0:8:0:1/1:96 +chr11 12315084 . G A 5.46 . DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,32:2:0:0/1:33 +chr11 12315186 . G A 53 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,1,7,0;MQ=48;PV4=0.36,0.00015,3.8e-05,1 PL:DP:SP:GT:GQ 83,0,134:11:0:0/1:86 +chr11 12315848 . C T 41 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,9;MQ=49;PV4=0.47,2.5e-06,0.034,1 PL:DP:SP:GT:GQ 71,0,205:17:0:0/1:74 +chr11 12315891 . G A 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,1,18;MQ=49 PL:DP:SP:GT:GQ 156,57,0:19:0:1/1:99 +chr11 12345459 . C T 37.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 69,6,0:2:0:1/1:49 +chr11 12355522 . a aGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12371475 . T A 29 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,5;MQ=47;PV4=0.44,0.21,0.041,1 PL:DP:SP:GT:GQ 59,0,86:9:0:0/1:62 +chr11 12371481 . T C 5.47 . DP=21;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 34,0,23:4:0:0/1:26 +chr11 12379792 . G C 9.2 . DP=17;AF1=0.5939;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 38,0,5:4:0:0/1:7 +chr11 12384950 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 12433216 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12443049 . G GCAGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12449341 . G C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 12449362 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12477690 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12489799 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 12490387 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12505922 . A T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12505945 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 12532939 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 12551928 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12573513 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12693258 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 12718501 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 12764945 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12766205 . ttttataa t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12770356 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12796712 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12806794 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12815862 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 12816728 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 12825530 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12875607 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 12888065 . C CAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12944911 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12970064 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12987869 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12991017 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 13011108 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 13050932 . G GTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13069299 . T C 29.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 61,6,0:2:0:1/1:49 +chr11 13072394 . G GCTTATTGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13100444 . GA GACA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 13119553 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13123592 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13132536 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 13164176 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 13220903 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 13226366 . AA AAGACGTCGTGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 13230891 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13231609 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 13250501 . ctt cTTtt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13250605 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 13254926 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 13268415 . TACATA T 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13292827 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 13324237 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13329003 . AG AGGCCGGGCCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13337694 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13344303 . a aTGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 13354559 . G A 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 13382060 . CT CTCTGT 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,68:3:0:0/1:44 +chr11 13394584 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13394670 . G C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13395729 . T C 17.1 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=4,4,0,4;MQ=49;PV4=0.21,0.1,0.0053,0.24 PL:DP:SP:GT:GQ 47,0,188:12:7:0/1:50 +chr11 13402503 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13402672 . A C 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,0.32,0.07,1 PL:DP:SP:GT:GQ 37,0,46:6:0:0/1:39 +chr11 13402677 . G C 36 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=47;PV4=1,0.23,0.04,1 PL:DP:SP:GT:GQ 66,0,57:8:0:0/1:59 +chr11 13444442 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13466306 . GT GTTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13514417 . C T 79 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=49 PL:DP:SP:GT:GQ 112,30,0:10:0:1/1:99 +chr11 13533647 . g gCTCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13536238 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13546659 . A AGGTCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13557347 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 13663117 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13683466 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13701180 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 13709804 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 13727191 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 13735725 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13735740 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 13746708 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 13759772 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 13779042 . C T 11.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 13779060 . T C 39.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=49 PL:DP:SP:GT:GQ 72,12,0:4:0:1/1:72 +chr11 13784107 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 13786663 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13793083 . CA CAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13797329 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 13827387 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13879231 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 13942136 . Ttctctctctctctctctc Ttctctctctctctctc 7.35 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 13992700 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 13999154 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 14016189 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 14016853 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 14039624 . CT CTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14041300 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 14042951 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14079442 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14079465 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 14085029 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14095072 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14154028 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14210091 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 14236072 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14245246 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14263018 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 14263359 . T TTCAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14279380 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 14298163 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 14303282 . T A 20 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=48;PV4=1,0.36,0.16,1 PL:DP:SP:GT:GQ 50,0,100:10:0:0/1:53 +chr11 14303283 . T A 10.4 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=49;PV4=1,0.29,0.32,0.29 PL:DP:SP:GT:GQ 40,0,82:7:0:0/1:43 +chr11 14316447 . T TTGACTTTCCAC 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,0.4,1,0.37 PL:DP:SP:GT:GQ 41,0,90:3:0:0/1:44 +chr11 14320637 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14323091 . g gTAACTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14331450 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14340249 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14364411 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14367694 . a aTTATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14384252 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 14392294 . t tTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14416979 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14438242 . ATTT AT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 14444978 . taa tAACAaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14456715 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14462312 . GCC GCCTCC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,91:3:0:0/1:44 +chr11 14464584 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 14472083 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 14476228 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14480016 . GTCAT GT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14480349 . G A 5.47 . DP=2;AF1=0.5015;CI95=0.5,0.5;DP4=0,1,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,22:2:0:0/1:25 +chr11 14484187 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14519990 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14526911 . A ATC 7.38 . INDEL;DP=3;AF1=0.504;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr11 14530535 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14532338 . C T 23.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=41 PL:DP:SP:GT:GQ 55,6,0:2:0:1/1:49 +chr11 14535386 . CAA CAATGAA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,0.19,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 14540671 . A G 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 14563056 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14583608 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14588278 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 14609095 . t tGCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14619261 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14625675 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 14678012 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14691487 . TC TCACTGAGAAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 14695199 . T TATA 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 14695786 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14705187 . ct cTTt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14710016 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14719031 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14772152 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14774276 . ATAA ATAAACGGGTAA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 14788331 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 14806821 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 14810762 . A G 66 . DP=39;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,5,2;MQ=47;PV4=1,0.065,0.16,1 PL:DP:SP:GT:GQ 96,0,34:9:0:0/1:37 +chr11 14825704 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 14840008 . ga gACCCCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14843861 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 14857382 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14879561 . AA AAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14880527 . TAAA T 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14892864 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14903771 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 14919223 . CA CAA 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 14972127 . CA CATTTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14973792 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 14990117 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 15004674 . taaaa t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15094254 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15112318 . gt gTTTGCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15117013 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 15135078 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 15137312 . T TCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15146133 . TTG TTGTG 7.35 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 15170686 . G A 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=14,1,8,3;MQ=48;PV4=0.28,2.3e-06,9.6e-05,1 PL:DP:SP:GT:GQ 145,0,255:26:6:0/1:99 +chr11 15197186 . A G 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 15199653 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15199957 . T C 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,3;MQ=50;PV4=1,0.058,0.25,1 PL:DP:SP:GT:GQ 31,0,60:5:0:0/1:34 +chr11 15199975 . C A 13.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,4;MQ=49;PV4=0.43,0.093,0.1,1 PL:DP:SP:GT:GQ 43,0,94:8:4:0/1:46 +chr11 15208275 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 15229783 . A ATCGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15243047 . G A 14.2 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=3,8,2,3;MQ=49;PV4=1,0.0034,0.097,1 PL:DP:SP:GT:GQ 44,0,255:16:0:0/1:47 +chr11 15255007 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 15255418 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 15295072 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 15347938 . G GAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 15356349 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 15361993 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 15363947 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 15366461 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15368255 . CAGA CA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 15377640 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15420380 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15435312 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 15437658 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15455901 . TTC TTCGTC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 15458904 . TTA T 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 15459865 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 15474060 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 15484379 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15524815 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 15529011 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 15542518 . t tGCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15557865 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 15564226 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 15602125 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 15620143 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 15626868 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15635666 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15663072 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15665333 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15681963 . ctc cTCAtc 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 15713614 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15717965 . TC TCTCGACTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15724450 . AG AGATCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15730250 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15731545 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15731568 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15738045 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15742065 . A AAGGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15783140 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15812940 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15822581 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15825934 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 15858529 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15886629 . T TTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15900855 . ca cATa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15920327 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 15920363 . a aTGCGGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15930249 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15984426 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 16013065 . C CGAGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 16027750 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 16044808 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16071513 . T G 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 16112813 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 16117000 . GG GGAG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 16133409 . C A 9.52 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,5;MQ=49;PV4=1,0.024,0.099,1 PL:DP:SP:GT:GQ 39,0,99:11:0:0/1:42 +chr11 16135539 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 16141765 . t tTCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 16202961 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 16203913 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 16207607 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 16227318 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 16339920 . T TATATCCTTC 7.49 . INDEL;DP=6;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 16380737 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 16452710 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 16455784 . CCA CCACA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 16463938 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 16574490 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 16611491 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 16734681 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 16742651 . tc tCGGTAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 16760244 . T G 62 . DP=19;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 95,24,0:8:0:1/1:96 +chr11 16760307 . C T 3.54 . DP=16;AF1=0.4998;CI95=0.5,0.5;DP4=5,1,2,1;MQ=50;PV4=1,0.16,0.0092,0.14 PL:DP:SP:GT:GQ 31,0,104:9:0:0/1:34 +chr11 16792420 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 16816369 . A G 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 34,0,60:3:0:0/1:37 +chr11 16822281 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 16823497 . gt gTt 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 16827574 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16835671 . GAAGGA G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 16836287 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16848393 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 16876618 . G A 99 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,6;MQ=45;PV4=1,0.0032,0,1 PL:DP:SP:GT:GQ 148,0,102:9:0:0/1:99 +chr11 16892863 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 16915975 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 16934278 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16968391 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16995049 . G GGTGGGGGCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17015395 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17022309 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17033736 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17034729 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17062283 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 17073813 . TC T 38.7 . INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=34 PL:DP:SP:GT:GQ 79,15,0:5:0:1/1:75 +chr11 17092094 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 17096059 . A G 34.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 67,12,0:4:0:1/1:72 +chr11 17098721 . G C 25 . DP=11;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,4,0;MQ=47;PV4=1,0.38,0.43,0.11 PL:DP:SP:GT:GQ 55,0,27:6:0:0/1:30 +chr11 17098728 . A T 14.2 . DP=10;AF1=0.505;CI95=0.5,0.5;DP4=1,0,4,0;MQ=47;PV4=1,0.25,0.32,1 PL:DP:SP:GT:GQ 44,0,17:5:0:0/1:20 +chr11 17104548 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17111272 . A G 10.2 . DP=21;AF1=0.6243;CI95=0.5,1;DP4=1,0,5,0;MQ=50;PV4=1,0.0055,0.35,1 PL:DP:SP:GT:GQ 39,0,4:6:0:0/1:6 +chr11 17138490 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17140747 . T A 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 17157712 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17171953 . A T 10.4 . DP=5;AF1=0.5025;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,1,0.092,0.11 PL:DP:SP:GT:GQ 40,0,20:4:0:0/1:23 +chr11 17172133 . T C 53 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=6,23,5,8;MQ=49;PV4=0.27,1.7e-12,0.02,1 PL:DP:SP:GT:GQ 83,0,255:42:6:0/1:86 +chr11 17190329 . T C 32 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=18,2,0,9;MQ=49;PV4=5.5e-06,0.00016,1.4e-07,1 PL:DP:SP:GT:GQ 62,0,255:29:53:0/1:65 +chr11 17218442 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 17250019 . G T 84.1 . DP=8;AF1=0.5163;CI95=0.5,1;DP4=1,0,4,1;MQ=46;PV4=1,1,0.11,0.046 PL:DP:SP:GT:GQ 114,0,12:6:0:0/1:15 +chr11 17263058 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17314154 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17316526 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 17323455 . t tGTGC 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17330061 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17332571 . C G 9.52 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,5,0,3;MQ=48;PV4=0.49,0.17,0.00013,0.35 PL:DP:SP:GT:GQ 39,0,219:12:3:0/1:42 +chr11 17332577 . G T 3.54 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=2,4,0,4;MQ=48;PV4=0.47,0.15,0.033,1 PL:DP:SP:GT:GQ 31,0,126:10:3:0/1:34 +chr11 17333580 . G A 6.2 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,2,0;MQ=49;PV4=0.33,0.26,0.048,0.49 PL:DP:SP:GT:GQ 35,0,51:4:5:0/1:38 +chr11 17351873 . TAAAAA TAAAAAA 26.6 . INDEL;DP=19;AF1=0.5163;CI95=0.5,1;DP4=0,3,0,11;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 64,0,12:14:0:0/1:15 +chr11 17352477 . TACAACAA TACAA 38.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=50;PV4=1,0.16,1,0.3 PL:DP:SP:GT:GQ 76,0,132:7:0:0/1:79 +chr11 17353832 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17387191 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17387613 . G C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17390911 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 17408630 . C T 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=16,3,15,9;MQ=46;PV4=0.17,1,3.6e-25,1 PL:DP:SP:GT:GQ 255,0,251:43:8:0/1:99 +chr11 17412399 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 17418477 . C A 92 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=14,8,7,5;MQ=49;PV4=1,3.6e-09,0.001,0.48 PL:DP:SP:GT:GQ 122,0,255:34:0:0/1:99 +chr11 17422052 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17427721 . G GCCTCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17429838 . C A 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.15,0,1 PL:DP:SP:GT:GQ 30,0,83:3:0:0/1:33 +chr11 17430131 . T C 8.64 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,4;MQ=49;PV4=1,0.17,0.14,0.038 PL:DP:SP:GT:GQ 38,0,129:13:0:0/1:41 +chr11 17433995 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17436936 . A G 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=48 PL:DP:SP:GT:GQ 145,39,0:13:0:1/1:99 +chr11 17438357 . A G 3.56 . DP=4;AF1=0.5038;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.21,0.33,0.46 PL:DP:SP:GT:GQ 31,0,18:3:0:0/1:21 +chr11 17445539 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17448704 . G A 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=43 PL:DP:SP:GT:GQ 157,27,0:9:0:1/1:99 +chr11 17477696 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17491571 . C T 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 17505652 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17517235 . A G 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 17518180 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 17520681 . G T 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 17524737 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17531449 . G T 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=45 PL:DP:SP:GT:GQ 140,30,0:10:0:1/1:99 +chr11 17532102 . C T 67 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,10,1,8;MQ=49;PV4=1,3.8e-05,0.00039,1 PL:DP:SP:GT:GQ 97,0,255:21:0:0/1:99 +chr11 17533635 . G A 37.1 . DP=24;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 70,21,0:7:0:1/1:84 +chr11 17534732 . GGG GGGAAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17542439 . T C 16.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,1;MQ=50;PV4=1,0.00095,1,1 PL:DP:SP:GT:GQ 46,0,37:7:0:0/1:39 +chr11 17544845 . C T 4.13 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,1,1;MQ=49;PV4=1,0.093,0.048,1 PL:DP:SP:GT:GQ 32,0,55:4:0:0/1:35 +chr11 17545091 . A G 4.61 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 17548401 . CG C 88.5 . INDEL;DP=34;AF1=0.5;CI95=0.5,0.5;DP4=1,8,0,20;MQ=50;PV4=0.31,2.3e-12,1,1 PL:DP:SP:GT:GQ 126,0,157:29:0:0/1:99 +chr11 17548874 . C T 30 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=3,12,0,7;MQ=49;PV4=0.52,0.17,0.01,1 PL:DP:SP:GT:GQ 60,0,199:22:3:0/1:63 +chr11 17552642 . A T 19 . DP=7;AF1=0.6671;CI95=0.5,1;DP4=1,0,4,0;MQ=46;PV4=1,1,0.25,0.35 PL:DP:SP:GT:GQ 48,0,3:5:0:0/1:5 +chr11 17564050 . CGA CGAAGATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17589092 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17594347 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17598498 . C CTG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17599763 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17602131 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17603847 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 17612119 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 17623710 . TGGGC T 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 17628620 . c cCGCGCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17632410 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17655484 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17664434 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17664440 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17691132 . tc tCCCCGGCc 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 17706008 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17711358 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17751675 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 17753107 . aa aATGCGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17753831 . AC ACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17757666 . G T 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 17798643 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 17799009 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17804735 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17810863 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 17834476 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 17834945 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17835196 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 17858267 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17876644 . AT ATTTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17880438 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17884232 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17896871 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 17965896 . act aCTGCTct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17981047 . C T 96 . DP=54;AF1=0.5;CI95=0.5,0.5;DP4=15,20,0,11;MQ=48;PV4=0.0087,0.092,1.5e-18,1 PL:DP:SP:GT:GQ 126,0,255:46:21:0/1:99 +chr11 17981704 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 18022947 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18029447 . A T 21 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=49;PV4=1,0.031,0.12,1 PL:DP:SP:GT:GQ 51,0,69:7:0:0/1:54 +chr11 18039395 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 18047255 . G T 39 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=5,13,1,14;MQ=50;PV4=0.19,5.7e-19,0.035,0.48 PL:DP:SP:GT:GQ 69,0,255:33:7:0/1:72 +chr11 18105302 . T C 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,13;MQ=47;PV4=1,5.4e-07,4.6e-06,1 PL:DP:SP:GT:GQ 140,0,210:24:0:0/1:99 +chr11 18108859 . ct cTTCGTGCGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18115265 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 18124871 . T G 23 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=14,8,0,9;MQ=49;PV4=0.0013,0.00023,2.1e-05,1 PL:DP:SP:GT:GQ 53,0,255:31:29:0/1:56 +chr11 18158993 . T C 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=9,8,16,6;MQ=49;PV4=0.31,6.7e-10,0.0065,1 PL:DP:SP:GT:GQ 174,0,255:39:5:0/1:99 +chr11 18159169 . A G 10.2 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 18164400 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 18170410 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18170434 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18194878 . T G 13.2 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=47;PV4=0.33,0.13,0.24,0.077 PL:DP:SP:GT:GQ 43,0,39:3:0:0/1:41 +chr11 18195051 . T C 62.1 . DP=32;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=49 PL:DP:SP:GT:GQ 95,18,0:6:0:1/1:90 +chr11 18208024 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18218587 . ACAGT A 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18231348 . G T 4.13 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,4,0;MQ=49;PV4=0.43,0.2,1,0.3 PL:DP:SP:GT:GQ 32,0,62:7:0:0/1:35 +chr11 18231479 . TA TGAAAA 5.08 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,39:3:0:0/1:40 +chr11 18231631 . G T 3.54 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=4,1,3,0;MQ=50;PV4=1,0.063,0.028,1 PL:DP:SP:GT:GQ 31,0,136:8:0:0/1:34 +chr11 18244656 . t tAGCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18253176 . C T 99 . DP=40;AF1=1;CI95=1,1;DP4=2,0,14,16;MQ=45;PV4=0.48,1,0.0018,1 PL:DP:SP:GT:GQ 255,56,0:32:3:1/1:99 +chr11 18253397 . T TC 4.42 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 18267027 . C T 99 . DP=20;AF1=1;CI95=0.5,1;DP4=1,0,5,5;MQ=44;PV4=1,1,0.43,0.38 PL:DP:SP:GT:GQ 192,8,0:11:0:1/1:56 +chr11 18267463 . A G 57 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,7,0;MQ=48;PV4=0.22,0.0017,0.12,0.11 PL:DP:SP:GT:GQ 87,0,61:9:0:0/1:64 +chr11 18269424 . C T 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr11 18278185 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 18286399 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18290874 . T C 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 18291400 . TGAG TGAGAG 7.35 . INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 18294384 . A AACAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18295752 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 18317458 . T A 67 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=47;PV4=1,0.00042,0.018,0.26 PL:DP:SP:GT:GQ 97,0,126:10:0:0/1:99 +chr11 18317699 . C T 6.98 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,3;MQ=50;PV4=0.4,0.022,0.11,0.21 PL:DP:SP:GT:GQ 36,0,49:5:0:0/1:39 +chr11 18319279 . G T 86 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=4,15,3,7;MQ=49;PV4=0.66,3.7e-10,1.5e-05,0.46 PL:DP:SP:GT:GQ 116,0,255:29:2:0/1:99 +chr11 18344836 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 18357270 . A G 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=17,0,13,0;MQ=47;PV4=1,5.3e-07,1.9e-29,0.18 PL:DP:SP:GT:GQ 164,0,239:30:0:0/1:99 +chr11 18360963 . T A 4.15 . DP=2;AF1=0.5049;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,17:2:0:0/1:20 +chr11 18360994 . T TGCAC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18361187 . T C 3.62 . DP=18;AF1=0.5161;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,1,0,0.46 PL:DP:SP:GT:GQ 31,0,12:3:0:0/1:15 +chr11 18371226 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18390331 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18427099 . C A 8.64 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=11,7,0,9;MQ=48;PV4=0.003,0.043,8.6e-05,0.086 PL:DP:SP:GT:GQ 38,0,252:27:25:0/1:41 +chr11 18427104 . T G 42 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=15,2,0,12;MQ=48;PV4=1.8e-06,7.7e-07,0.00031,0.15 PL:DP:SP:GT:GQ 72,0,255:29:58:0/1:75 +chr11 18467821 . T C 34 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=3,1,5,0;MQ=48;PV4=0.44,0.34,0.013,1 PL:DP:SP:GT:GQ 64,0,72:9:0:0/1:66 +chr11 18500230 . A C 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 18503159 . C T 81 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=9,4,3,5;MQ=48;PV4=0.2,6.9e-06,1.2e-06,1 PL:DP:SP:GT:GQ 111,0,255:21:7:0/1:99 +chr11 18505552 . G A 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=7,4,10,4;MQ=48;PV4=1,1.3e-05,0.00036,0.11 PL:DP:SP:GT:GQ 163,0,255:25:0:0/1:99 +chr11 18532638 . G C 6.2 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,44:2:0:0/1:37 +chr11 18553792 . A G 3.01 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,0.44,0.2,1 PL:DP:SP:GT:GQ 30,0,53:5:0:0/1:33 +chr11 18555949 . T C 23 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=13,5,6,1;MQ=50;PV4=0.64,3e-15,3.3e-07,1 PL:DP:SP:GT:GQ 53,0,255:25:2:0/1:56 +chr11 18570305 . A ACG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 18591714 . TTA TTCTA 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18592374 . T TGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18596138 . G C 12.3 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 18610493 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18612799 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 18636607 . C A 16.1 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,8,0,3;MQ=48;PV4=1,0.45,1.9e-08,1 PL:DP:SP:GT:GQ 46,0,164:12:0:0/1:49 +chr11 18648107 . Atgattaa A 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 18649620 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18652865 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18686567 . C G 4.61 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 18723549 . C A 4.13 . DP=45;AF1=0.4998;CI95=0.5,0.5;DP4=8,14,0,7;MQ=50;PV4=0.14,0.011,0.0006,0.25 PL:DP:SP:GT:GQ 32,0,255:29:8:0/1:35 +chr11 18729115 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 18729265 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18732119 . T G 50.5 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=48 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 +chr11 18732200 . A T 3.01 . DP=16;AF1=0.4997;CI95=0.5,0.5;DP4=2,2,3,0;MQ=48;PV4=0.43,0.49,0.038,1 PL:DP:SP:GT:GQ 30,0,66:7:4:0/1:33 +chr11 18732426 . T G 23 . DP=23;AF1=0.6671;CI95=0.5,1;DP4=1,0,0,4;MQ=49;PV4=0.2,1,0.26,0.33 PL:DP:SP:GT:GQ 52,0,3:5:0:0/1:5 +chr11 18735480 . G A 47 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=14,9,19,2;MQ=50;PV4=0.036,4.2e-20,0.011,1 PL:DP:SP:GT:GQ 77,0,255:44:14:0/1:80 +chr11 18735753 . G A 83.1 . DP=33;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=49 PL:DP:SP:GT:GQ 116,21,0:7:0:1/1:84 +chr11 18735947 . T C 99 . DP=46;AF1=1;CI95=1,1;DP4=1,0,25,12;MQ=46;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 255,97,0:38:0:1/1:99 +chr11 18737095 . C T 61.1 . DP=44;AF1=1;CI95=0.5,1;DP4=1,0,4,3;MQ=49;PV4=1,1,0.34,1 PL:DP:SP:GT:GQ 92,5,0:8:0:1/1:46 +chr11 18738281 . C T 99 . DP=62;AF1=1;CI95=1,1;DP4=1,1,28,22;MQ=48;PV4=1,1,0.083,1 PL:DP:SP:GT:GQ 236,113,0:52:0:1/1:99 +chr11 18748239 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18751067 . A T 6.2 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,1,0.014,1 PL:DP:SP:GT:GQ 35,0,44:5:0:0/1:37 +chr11 18751067 . AG AGTTAGG 4.42 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,36:4:0:0/1:38 +chr11 18754679 . A G 42 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=13,0,6,0;MQ=49;PV4=1,0.0001,0.0017,0.2 PL:DP:SP:GT:GQ 72,0,225:19:0:0/1:75 +chr11 18763144 . G GTGTCGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18775747 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 18781552 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18787259 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 18787389 . CC CCACTC 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 18804205 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18822508 . gg gGTATCCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18853224 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 18877495 . a aTCATCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18886976 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18892702 . A C 16.9 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr11 18893056 . T A 37.1 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 70,21,0:7:0:1/1:84 +chr11 18909134 . C T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,2,15;MQ=49 PL:DP:SP:GT:GQ 159,51,0:17:0:1/1:99 +chr11 18918589 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 18977638 . G GTGATT 7.35 . INDEL;DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 18977927 . A T 3.55 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18978096 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 18978456 . G A 19.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 18993843 . GG GGTTG 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr11 18994005 . T C 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,8,1;MQ=45 PL:DP:SP:GT:GQ 189,27,0:9:0:1/1:99 +chr11 18994262 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 19038559 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19071567 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19105899 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 19152260 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 19163662 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 19228984 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 19251968 . T C 7.8 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.035,0.21,1 PL:DP:SP:GT:GQ 37,0,80:4:0:0/1:40 +chr11 19256250 . C T 99 . DP=24;AF1=1;CI95=1,1;DP4=1,0,18,1;MQ=48;PV4=1,0.22,0.21,1 PL:DP:SP:GT:GQ 135,32,0:20:0:1/1:99 +chr11 19268413 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 19288741 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19290875 . g gCAT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 19291480 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 19296125 . A G 25.8 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=40 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr11 19296132 . T G 36 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,3;MQ=44;PV4=0.14,0.21,0.3,1 PL:DP:SP:GT:GQ 66,0,64:7:8:0/1:65 +chr11 19296135 . C T 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,0,2;MQ=44;PV4=0.1,0.25,1,0.36 PL:DP:SP:GT:GQ 31,0,73:5:10:0/1:34 +chr11 19296355 . A G 6.02 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 19321154 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 19321968 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 19324976 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19340892 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19361910 . C CAGAAATTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 19379651 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19391309 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19396419 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 19428498 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 19431297 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19451091 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 19452577 . TT TTAAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 19479044 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 19555228 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19556944 . G GTTATAAGCGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 19562910 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 19577330 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 19587369 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19587385 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 19625766 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 19639038 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 19650815 . ttaggca t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 19692180 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19717086 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 19738953 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 19772285 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 19839583 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 19844198 . A AACCTGGGGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 19853137 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 19864609 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 19896538 . A G 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 19905031 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19911152 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19922805 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 19947767 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19954949 . A T 4.13 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,0,2;MQ=48;PV4=0.1,0.058,0.022,1 PL:DP:SP:GT:GQ 32,0,96:5:10:0/1:35 +chr11 19955500 . A G 62.1 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=48 PL:DP:SP:GT:GQ 95,18,0:6:0:1/1:90 +chr11 19967872 . T C 55 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=48;PV4=1,1.1e-05,0.047,0.087 PL:DP:SP:GT:GQ 85,0,129:10:0:0/1:88 +chr11 19970501 . T C 5.46 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=5,3,0,3;MQ=49;PV4=0.18,0.0065,0.08,0.46 PL:DP:SP:GT:GQ 34,0,251:11:7:0/1:37 +chr11 19970558 . T C 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=44 PL:DP:SP:GT:GQ 136,18,0:6:0:1/1:90 +chr11 19970579 . C T 24.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=38 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 19970598 . A T 6.79 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 20005802 . G A 44 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=10,14,1,4;MQ=48;PV4=0.62,0.092,8.9e-06,1 PL:DP:SP:GT:GQ 74,0,255:29:2:0/1:77 +chr11 20065938 . C T 43 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 75,9,0:3:0:1/1:63 +chr11 20067064 . C T 99 . DP=48;AF1=1;CI95=1,1;DP4=0,1,21,19;MQ=48;PV4=0.49,0.094,0.18,1 PL:DP:SP:GT:GQ 255,91,0:41:0:1/1:99 +chr11 20089792 . G C 66 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,4,1,2;MQ=48;PV4=1,0.23,0,1 PL:DP:SP:GT:GQ 96,0,220:9:0:0/1:99 +chr11 20089944 . T C 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=3,13,1,15;MQ=47;PV4=0.6,0.00019,5.5e-07,1 PL:DP:SP:GT:GQ 183,0,255:32:2:0/1:99 +chr11 20098880 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20099112 . A T 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,13,6;MQ=43 PL:DP:SP:GT:GQ 255,57,0:19:0:1/1:99 +chr11 20101704 . C T 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,7,14;MQ=49 PL:DP:SP:GT:GQ 181,63,0:21:0:1/1:99 +chr11 20101744 . C A 33.1 . DP=11;AF1=0.505;CI95=0.5,0.5;DP4=0,1,3,1;MQ=49;PV4=0.4,0.084,0.27,1 PL:DP:SP:GT:GQ 63,0,17:5:0:0/1:20 +chr11 20101830 . T G 8.65 . DP=10;AF1=0.5002;CI95=0.5,0.5;DP4=0,3,0,3;MQ=47;PV4=1,1,0.024,1 PL:DP:SP:GT:GQ 38,0,31:6:0:0/1:33 +chr11 20104669 . G A 77 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=13,9,15,9;MQ=50;PV4=1,5.6e-31,0.042,0.011 PL:DP:SP:GT:GQ 107,0,255:46:0:0/1:99 +chr11 20105987 . GCCCT G 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 20112649 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=46 PL:DP:SP:GT:GQ 161,36,0:12:0:1/1:99 +chr11 20119160 . G A 8.64 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=5,22,8,0;MQ=49;PV4=5.5e-05,1.5e-05,3.3e-07,1 PL:DP:SP:GT:GQ 38,0,255:35:43:0/1:41 +chr11 20124914 . A C 99 . DP=69;AF1=1;CI95=1,1;DP4=1,0,30,24;MQ=49;PV4=1,0.0021,0.36,1 PL:DP:SP:GT:GQ 197,133,0:55:0:1/1:99 +chr11 20127512 . CCCACC CCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20129075 . G A 61 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=44 PL:DP:SP:GT:GQ 93,9,0:3:0:1/1:63 +chr11 20130578 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 20130852 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 20138587 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 20148609 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 20165244 . TT TTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20178717 . G T 28 . DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,4;MQ=49;PV4=1,0.00038,0.19,1 PL:DP:SP:GT:GQ 58,0,35:5:0:0/1:38 +chr11 20208447 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 20248746 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20264675 . t tGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20265189 . TCT TCTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20265576 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20279267 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20285893 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 20300649 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 20308309 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 20323854 . A ATTGAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20328174 . tcctcc tc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20331281 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 20351202 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 20354610 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 20372457 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20403825 . A T 22 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 20404757 . T C 28 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=48;PV4=1,0.0099,0.013,1 PL:DP:SP:GT:GQ 58,0,138:11:0:0/1:61 +chr11 20413777 . A C 10.4 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,1,3,0;MQ=50;PV4=0.25,0.0088,0.33,1 PL:DP:SP:GT:GQ 40,0,36:4:0:0/1:38 +chr11 20419028 . T C 27 . DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,4,0;MQ=47;PV4=1,0.00035,0.2,0.16 PL:DP:SP:GT:GQ 57,0,35:5:0:0/1:38 +chr11 20419107 . T G 30 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=5,4,6,0;MQ=47;PV4=0.1,0.13,0.073,0.34 PL:DP:SP:GT:GQ 60,0,178:15:10:0/1:63 +chr11 20419110 . A G 61 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=3,4,10,0;MQ=47;PV4=0.015,0.05,0.017,1 PL:DP:SP:GT:GQ 91,0,140:17:18:0/1:94 +chr11 20419130 . G C 41 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=9,2,0,8;MQ=49;PV4=0.00071,3.8e-06,0.0036,0.35 PL:DP:SP:GT:GQ 71,0,255:19:31:0/1:74 +chr11 20423134 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 20443082 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 20487075 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20497261 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20515445 . TT TTAT 7.37 . INDEL;DP=3;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr11 20526299 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20529886 . G A 99 . DP=48;AF1=1;CI95=1,1;DP4=0,1,10,8;MQ=49;PV4=0.47,0.12,0.27,1 PL:DP:SP:GT:GQ 170,31,0:19:0:1/1:99 +chr11 20529923 . G C 4.13 . DP=33;AF1=0.4998;CI95=0.5,0.5;DP4=5,8,5,1;MQ=49;PV4=0.14,0.022,0.0071,0.13 PL:DP:SP:GT:GQ 32,0,239:19:9:0/1:35 +chr11 20536412 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 20564869 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20574641 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20621873 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 20623156 . C G 27.5 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 20629164 . G A 82 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=16,11,3,8;MQ=49;PV4=0.15,1.9e-14,0.0001,0.43 PL:DP:SP:GT:GQ 112,0,255:38:8:0/1:99 +chr11 20636411 . C T 55 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,11;MQ=49;PV4=1,2.3e-08,0.049,1 PL:DP:SP:GT:GQ 85,0,205:21:0:0/1:88 +chr11 20639400 . A G 99 . DP=60;AF1=1;CI95=1,1;DP4=0,1,11,38;MQ=43;PV4=1,1,2.1e-06,1 PL:DP:SP:GT:GQ 255,124,0:50:0:1/1:99 +chr11 20639449 . CTAAG CTAAGTAAG 99 . INDEL;DP=45;AF1=0.5;CI95=0.5,0.5;DP4=5,13,2,14;MQ=50;PV4=0.41,0.00051,0.065,1 PL:DP:SP:GT:GQ 225,0,255:34:4:0/1:99 +chr11 20639465 . A C 28 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=2,17,1,9;MQ=50;PV4=1,1.7e-11,0.073,1 PL:DP:SP:GT:GQ 58,0,255:29:0:0/1:61 +chr11 20640450 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 20660870 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 20676253 . T C 39 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=11,5,3,3;MQ=49;PV4=0.62,0.00062,4.9e-08,1 PL:DP:SP:GT:GQ 69,0,255:22:2:0/1:72 +chr11 20679820 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 20690017 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 20693678 . AA AACCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20735443 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20757396 . T A 7.81 . DP=2;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,20:2:0:0/1:23 +chr11 20795995 . ct cTGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20799069 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20799080 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 20825321 . t tCGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20859500 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20879075 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20896496 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 20901087 . T TAGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20940736 . A G 3.01 . DP=7;AF1=0.4997;CI95=0.5,0.5;DP4=4,0,2,0;MQ=47;PV4=1,0.2,0.033,1 PL:DP:SP:GT:GQ 30,0,74:6:0:0/1:33 +chr11 20940759 . aca aCAGGCca 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 20959465 . C A 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,14;MQ=44;PV4=1,0.29,2.3e-08,1 PL:DP:SP:GT:GQ 184,0,213:26:0:0/1:99 +chr11 20959482 . G C 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=41 PL:DP:SP:GT:GQ 141,48,0:16:0:1/1:99 +chr11 20968852 . C G 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,0.021,0,0.12 PL:DP:SP:GT:GQ 36,0,121:7:0:0/1:39 +chr11 20981893 . AT ATGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20981894 . T C 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 20992896 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21037745 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21046606 . T TACATGTAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 21068713 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 21087786 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 21332352 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21346318 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 21352363 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 21375872 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 21414938 . TAA TAATAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21470102 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 21519110 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21532974 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21581665 . C T 58 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=11,0,9,0;MQ=48;PV4=1,2.2e-07,1.3e-08,1 PL:DP:SP:GT:GQ 88,0,216:20:0:0/1:91 +chr11 21585374 . t tGTGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21589417 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21592749 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21596451 . A ACTGTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21602694 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 21613077 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 21638286 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 21652181 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 21668018 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21674242 . T TCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21687716 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 21688712 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 21689473 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21767318 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 21771628 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 21836178 . ggagagagagagag ggagagagagag 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 21854346 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 21879369 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 21888512 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 21888936 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21892901 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 21909014 . aac aACACac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21925254 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 21930965 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 21940615 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 21941718 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21955147 . a aTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21979647 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21991915 . gt gTCAt 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 22007547 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 22014970 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 22022526 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 22053136 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22070980 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 22079662 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22081709 . a aCT 9.05 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 22093076 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22126082 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 22192907 . AT ATCTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22193702 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22226876 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22242729 . T C 86 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=47;PV4=1,0.26,0.0025,1 PL:DP:SP:GT:GQ 116,0,133:12:0:0/1:99 +chr11 22242809 . T G 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 22251461 . T TTTTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22262713 . acac aCACTcac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22266251 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 22279650 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 22281959 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22283631 . A G 8.66 . DP=12;AF1=0.502;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.071,0.25 PL:DP:SP:GT:GQ 38,0,21:5:0:0/1:24 +chr11 22294550 . T G 44 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,6,1,8;MQ=49;PV4=1,0.031,0.024,0.46 PL:DP:SP:GT:GQ 74,0,78:15:0:0/1:76 +chr11 22297770 . G C 73 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,14;MQ=48;PV4=1,9.5e-09,0.00073,1 PL:DP:SP:GT:GQ 103,0,198:24:0:0/1:99 +chr11 22300408 . t tCTCGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22360195 . G GTCGGT 43.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=50;PV4=1,1,1,0.49 PL:DP:SP:GT:GQ 81,0,41:3:0:0/1:44 +chr11 22364374 . TC TCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22398255 . C T 57 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=1,8,1,7;MQ=49;PV4=1,1.6e-06,0.0018,1 PL:DP:SP:GT:GQ 87,0,228:17:0:0/1:90 +chr11 22399545 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 22407582 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 22471476 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22488021 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 22515830 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22516621 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 22522576 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22528175 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22530695 . A T 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 22563328 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 22565945 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 22568350 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22568354 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22600913 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 22621123 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 22696365 . A C 40.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 73,15,0:5:0:1/1:75 +chr11 22740084 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 22745072 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 22788740 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22789166 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 22824556 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22829106 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22835559 . T G 3.08 . DP=2;AF1=0.516;CI95=0.5,0.5;DP4=0,1,1,0;MQ=39;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,12:2:0:0/1:15 +chr11 22835571 . T C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=39 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 22847080 . CTAA C 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 22849486 . T TCCGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22867208 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22872946 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22875867 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 22902634 . A AGAGAGAAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22928602 . t tTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22963388 . ctt cTTTGGTGGGtt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22965614 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 22978567 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 22997643 . tagta t 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 23017577 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23038208 . T TAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23038782 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 23117438 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23117447 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23119561 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 23128492 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23133917 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 23145332 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23179528 . C G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 23191788 . C A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23201955 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23212799 . a aAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 23213917 . a aCAG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 23238782 . G T 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23242784 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23265477 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 23269487 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 23292307 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23312730 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23352060 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23381592 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23422685 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 23426149 . TGC TGCACGC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.4 PL:DP:SP:GT:GQ 38,0,78:4:0:0/1:41 +chr11 23426467 . A T 53 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=49;PV4=1,2.7e-10,0.055,1 PL:DP:SP:GT:GQ 83,0,166:14:0:0/1:86 +chr11 23426998 . C G 10.4 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.019,0.17 PL:DP:SP:GT:GQ 40,0,32:4:0:0/1:34 +chr11 23427630 . G C 7.8 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,3,2,0;MQ=48;PV4=0.4,0.38,0.089,0.45 PL:DP:SP:GT:GQ 37,0,94:6:4:0/1:40 +chr11 23477004 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23533212 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23549734 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23550829 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 23570588 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 23575208 . T TTGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23578302 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23583446 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23601484 . a aCCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23675262 . agact a 11.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 23708630 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23714198 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 23745538 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 23766816 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 23769243 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 23784369 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 23810855 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 23814991 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23839818 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 23840877 . T TCGTCTGACCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23927672 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23931465 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23936820 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23952183 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 23953388 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23974376 . t tTCCAAGGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23994009 . GC GCATAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 24009977 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 24016147 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24063703 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24064736 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24073139 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24081322 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24091612 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 24103093 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 24132058 . a aACTGATACACT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 24133228 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 24133933 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24141353 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24175600 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 24183797 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 24184979 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24189464 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 24214698 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 24220621 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24255896 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24294006 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 24300347 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 24332326 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24339210 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 24441286 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 24506514 . C A 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 24521140 . CAG C 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 24548498 . T TCAGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 24573500 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 24596607 . T G 3.05 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,15:2:0:0/1:18 +chr11 24614778 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24634069 . AT ATGGGCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 24726108 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24740221 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24740317 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 24759861 . C T,G,A 3.98 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 50,23,32,40,17,0,8,29,19,37:4:0:1/1:49 +chr11 24759866 . T G 12.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,1,0.045,1 PL:DP:SP:GT:GQ 42,0,48:7:0:0/1:44 +chr11 24773106 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 24835951 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24936025 . A C 13.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 24936027 . A C,G 8.44 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=45 PL:DP:SP:GT:GQ 43,10,38,4,0,38:3:0:1/1:49 +chr11 24956165 . G GACCGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 24998013 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25004855 . T G 3.01 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,4;MQ=46;PV4=0.2,0.0025,0.29,0.26 PL:DP:SP:GT:GQ 30,0,39:5:0:0/1:32 +chr11 25005102 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 25052884 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25064334 . tt tTTCt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 25064729 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25072409 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25073439 . C CATGTACAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25098938 . G C 72.8 . DP=53;AF1=1;CI95=0.5,1;DP4=0,1,4,4;MQ=48;PV4=1,0.41,0.26,1 PL:DP:SP:GT:GQ 104,6,0:9:0:1/1:49 +chr11 25100229 . G A 46.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 79,15,0:5:0:1/1:75 +chr11 25113973 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 25148842 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25154717 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25168558 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25171256 . A G 4.77 . DP=2;AF1=0.5007;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,25:2:0:0/1:27 +chr11 25206903 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25234739 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25243449 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25260900 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25291600 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25347242 . AAT AATTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25381293 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 25396634 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25396649 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25425765 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25444616 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25458451 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 25497137 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25499410 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25515249 . A ACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25550444 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 25557563 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 25571700 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25704986 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25708434 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25725974 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25726395 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25732761 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25732768 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25762304 . tt tTAGCATATACt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25787431 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 25831105 . G GAATGTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25835602 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 25838838 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 25862930 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25866169 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25875195 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25880296 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 25897797 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25905321 . A ATCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25918872 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25924247 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 25953425 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 25957864 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 26010593 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 26020036 . at aTCACTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26044612 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 26060035 . AA AAGA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 26067594 . C T 67.5 . DP=7;AF1=1;CI95=0.5,1;DP4=1,0,6,0;MQ=47;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 99,7,0:7:0:1/1:57 +chr11 26141907 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 26175873 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26200194 . G GATTGTTTGGT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 26223956 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26232998 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 26317700 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 26361237 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26366395 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 26379544 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26408508 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26459885 . T G 7.19 . DP=2;AF1=0.5335;CI95=0.5,1;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,9:2:0:0/1:12 +chr11 26467407 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 26467419 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 26484496 . G C 31 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,1,0.00029,1 PL:DP:SP:GT:GQ 61,0,79:5:0:0/1:64 +chr11 26489665 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26518584 . c cGGCTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26547348 . G A 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 26547353 . T G 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 26547870 . TT TTTTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26552702 . T C 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=47 PL:DP:SP:GT:GQ 132,24,0:8:0:1/1:96 +chr11 26552864 . A T 6.98 . DP=39;AF1=0.4999;CI95=0.5,0.5;DP4=4,18,7,0;MQ=49;PV4=0.00021,0.0018,0.0018,0.39 PL:DP:SP:GT:GQ 36,0,255:29:37:0/1:39 +chr11 26558903 . A G 5.46 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,1,0.047,0.18 PL:DP:SP:GT:GQ 34,0,37:7:0:0/1:35 +chr11 26563464 . A T 38 . DP=14;AF1=0.5013;CI95=0.5,0.5;DP4=2,0,4,0;MQ=47;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 68,0,23:6:0:0/1:26 +chr11 26563652 . T G 52.3 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 85,15,0:5:0:1/1:75 +chr11 26568966 . A G 99 . DP=69;AF1=1;CI95=1,1;DP4=1,1,32,28;MQ=50;PV4=1,9e-09,0.37,1 PL:DP:SP:GT:GQ 178,123,0:62:0:1/1:99 +chr11 26581361 . T G 8.87 . DP=14;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,3;MQ=50;PV4=1,0.32,0.33,0.013 PL:DP:SP:GT:GQ 38,0,9:4:0:0/1:12 +chr11 26587133 . T C 99 . DP=48;AF1=1;CI95=1,1;DP4=0,1,9,30;MQ=44;PV4=1,1,0.00014,1 PL:DP:SP:GT:GQ 255,79,0:40:0:1/1:99 +chr11 26593984 . C CGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26619872 . T C 36 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,0.032,0.16,0.13 PL:DP:SP:GT:GQ 66,0,57:6:0:0/1:59 +chr11 26646058 . T G,A 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=44 PL:DP:SP:GT:GQ 48,17,36,11,0,36:3:0:1/1:49 +chr11 26647554 . tg tGACCCAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26656714 . C G 29 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,2;MQ=48;PV4=1,1,0,0.17 PL:DP:SP:GT:GQ 59,0,106:7:0:0/1:62 +chr11 26677867 . T C 8.64 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=9,0,3,0;MQ=49;PV4=1,0.0024,3.7e-05,0.092 PL:DP:SP:GT:GQ 38,0,200:12:0:0/1:41 +chr11 26691876 . T TTC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 26692742 . G A 66 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=10,23,4,5;MQ=48;PV4=0.45,0.011,1.4e-06,1 PL:DP:SP:GT:GQ 96,0,255:42:3:0/1:99 +chr11 26694979 . A G 81 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=9,9,7,5;MQ=49;PV4=0.72,1.4e-11,0.0079,1 PL:DP:SP:GT:GQ 111,0,255:30:1:0/1:99 +chr11 26702664 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,2,16;MQ=49 PL:DP:SP:GT:GQ 154,54,0:18:0:1/1:99 +chr11 26705124 . C G 3.56 . DP=2;AF1=0.503;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,19:2:0:0/1:22 +chr11 26707257 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 26725586 . Tt TTGGt 7.37 . INDEL;DP=10;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr11 26728117 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 26786537 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 26800840 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26800868 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 26825557 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 26861200 . g gCTGAGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 26890195 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 26900299 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 26928948 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 26930494 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 26940094 . A C 3.02 . DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,26:2:0:0/1:28 +chr11 26967639 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 26982765 . aaaca aa 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 26985704 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27006220 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 27009658 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27010275 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 27014240 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27016885 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27034355 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27064584 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27076977 . C T 61.8 . DP=15;AF1=1;CI95=0.5,1;DP4=0,1,8,1;MQ=49;PV4=0.2,0.49,0.38,1 PL:DP:SP:GT:GQ 94,10,0:10:0:1/1:60 +chr11 27077118 . C T 52.2 . DP=42;AF1=0.7303;CI95=0.5,1;DP4=1,0,3,3;MQ=49;PV4=1,0.3,0.3,1 PL:DP:SP:GT:GQ 81,0,2:7:0:0/1:3 +chr11 27081720 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27084509 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 27149043 . T G 26 . DP=14;AF1=0.6671;CI95=0.5,1;DP4=0,1,0,6;MQ=49;PV4=1,0.34,1,0.41 PL:DP:SP:GT:GQ 55,0,3:7:0:0/1:5 +chr11 27161902 . T G 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 27178826 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 27236744 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27247452 . CT CTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27254481 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27258676 . t tGCTGATACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27354269 . cag cAGag 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 27389582 . C T 12.3 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=12,6,0,7;MQ=48;PV4=0.0052,0.0013,5e-05,0.46 PL:DP:SP:GT:GQ 42,0,255:25:23:0/1:45 +chr11 27390089 . T C 69.1 . DP=40;AF1=0.9966;CI95=0.5,1;DP4=1,0,4,4;MQ=49;PV4=1,0.15,0.27,1 PL:DP:SP:GT:GQ 98,1,0:9:0:1/1:23 +chr11 27398845 . G A 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=46 PL:DP:SP:GT:GQ 148,30,0:10:0:1/1:99 +chr11 27408453 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27431305 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27435452 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27444985 . C CGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27448946 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 27470825 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 27487246 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 27499134 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27510115 . T TAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27511187 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 27514772 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27541183 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27575069 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 27576318 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27585787 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27588418 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 27605891 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 27630252 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 27640608 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27658786 . ga gATa 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 27660255 . gaa gAAAaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27668623 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27679662 . T C 3.02 . DP=55;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,2,0;MQ=49;PV4=0.33,0.19,0.33,1 PL:DP:SP:GT:GQ 30,0,22:3:0:0/1:24 +chr11 27679916 . C T 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=7,10,4,11;MQ=49;PV4=0.47,0.00015,0.052,0.08 PL:DP:SP:GT:GQ 134,0,255:32:3:0/1:99 +chr11 27700208 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27710686 . CC CCCCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27715215 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27739924 . TT TTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27783634 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 27799583 . TC TCCCCTGACGC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 27801007 . t tCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27801376 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27804265 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27848997 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 27870455 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27879383 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 27893149 . ctggagtt c 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27893925 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27912286 . TC TCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27953155 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27987608 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27993250 . CA CATGCTGACTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28020272 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 28030529 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28037883 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28045807 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 28057957 . T C 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=6,9,4,11;MQ=48;PV4=0.7,4.9e-09,5.5e-05,1 PL:DP:SP:GT:GQ 184,0,255:30:2:0/1:99 +chr11 28077061 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 28113133 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28123744 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 28156486 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 28172043 . A AACCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28177135 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28178836 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 28206387 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 28216177 . A AGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 28233369 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28266048 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28269624 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28311682 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 28318343 . G T 4.79 . DP=2;AF1=0.5039;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,18:2:0:0/1:21 +chr11 28346632 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 28362697 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28374233 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 28380313 . t tGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28381585 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28429976 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 28434533 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28458502 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 28508617 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 28534012 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28562214 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28562465 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 28585232 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 28643618 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28644839 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28652870 . g gAGGAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28684569 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28694395 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28722035 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28732254 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28734677 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 28750168 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28751780 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28762991 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 28776397 . actc aCTCTTCTctc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28794877 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 28818472 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 28873697 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28884571 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28942415 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 28959503 . a aTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29059412 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 29062772 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29076196 . ag aGGGTTTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29089335 . taac t 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29103419 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29123050 . AGGCCTGT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29129039 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29161344 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 29181496 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29182333 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29276322 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29283368 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 29291925 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29295733 . ga gATCCTTTAa 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 29308255 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 29350552 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29356667 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29417966 . g gGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29436233 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29463381 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29473444 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29531149 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29544975 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29552801 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29567588 . G T 22 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 29597913 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29613587 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29615801 . A C 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29647032 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29651878 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 29654544 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29678407 . GCCAC GC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 29736154 . AA AATTACA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 29789776 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 29801453 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 29803247 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 29807469 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29829282 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29832092 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 29887490 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29895137 . CA CATAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29898114 . aa aACCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29902573 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29918813 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29920493 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29937291 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29944692 . ct cTTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29954805 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29965934 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 29968353 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29998224 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30006216 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30019953 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 30057828 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30065191 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 30071565 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 30101324 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30122547 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30159975 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30159991 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30170719 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 30188926 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30218930 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30240868 . T TCGGAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30255185 . C T 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=13,11,11,9;MQ=49;PV4=1,9e-06,0.00049,1 PL:DP:SP:GT:GQ 217,0,255:44:0:0/1:99 +chr11 30274309 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30277295 . G T 7.02 . DP=2;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,16:2:0:0/1:19 +chr11 30277410 . a aTC 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 30302993 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30317185 . cc cCTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30333942 . t tGCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30337797 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30352473 . CGG CAGGG 64.7 . INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 105,15,0:5:0:1/1:75 +chr11 30358157 . C A 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 30358351 . A ATATTT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,99:4:0:0/1:41 +chr11 30369794 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30384880 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30390265 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30400746 . G GCAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 30403519 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 30405794 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30425899 . A ACCAGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30427164 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 30441783 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 30457517 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30476963 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 30549404 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30557727 . AG AGATCGG 7.37 . INDEL;DP=8;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr11 30565559 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30574338 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 30575753 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30576672 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30594407 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 30654225 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30670098 . a aTTAGAAGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30688722 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30745428 . g gCAACATAA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 30745484 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30761369 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 30762533 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30780280 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 30780871 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30806392 . CT CTTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30848706 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 30853187 . a aCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30863600 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30928412 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 30930492 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30964685 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 31008548 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 31019517 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 31033628 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31060004 . GCC GCCCATTAACC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31075767 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 31091188 . T TGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31103517 . A AAGCCAGGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31115533 . A ACTG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 31182980 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31189144 . T TCCTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31217600 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 31224997 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31249193 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31282385 . CT CTCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31286221 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 31302551 . C A 36 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,0.023,0.048,1 PL:DP:SP:GT:GQ 66,0,135:7:0:0/1:69 +chr11 31312450 . ATG ATGTGCTGTG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 38,0,68:4:0:0/1:41 +chr11 31332532 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 31344505 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31361886 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 31364294 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 31375063 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31377076 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 31384420 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31392326 . G T 4.77 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=0,14,5,0;MQ=49;PV4=8.6e-05,2e-05,0.007,0.49 PL:DP:SP:GT:GQ 33,0,227:19:41:0/1:36 +chr11 31446526 . t tCTGTCTTA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 31532119 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 31560272 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31606855 . AA AAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31616496 . T C 14.3 . DP=4;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.16,0.24,0.18 PL:DP:SP:GT:GQ 44,0,13:4:0:0/1:16 +chr11 31621557 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 31634179 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 31637136 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 31652158 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 31653956 . C A 66.5 . DP=31;AF1=0.8277;CI95=0.5,1;DP4=1,1,1,7;MQ=49;PV4=0.38,1,0.12,1 PL:DP:SP:GT:GQ 95,0,1:10:4:1/1:5 +chr11 31693486 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31709737 . A ATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31735274 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31763739 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31778273 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 31792356 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 31823301 . T C 13.2 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=10,3,0,8;MQ=49;PV4=0.001,0.00027,0.0061,0.33 PL:DP:SP:GT:GQ 43,0,255:21:30:0/1:46 +chr11 31830095 . GA GATGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31857265 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 31860660 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 31863378 . A AAT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 31872731 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31877570 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 31892943 . T G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 31903485 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 31903840 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 31917653 . CAAA CAAAAA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 31998757 . A C 14.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 32006692 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 32035390 . C CGGGGATTTCT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 32101109 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 32118925 . A G 58.3 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=46 PL:DP:SP:GT:GQ 91,15,0:5:0:1/1:75 +chr11 32125855 . A G 4.61 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 32127796 . gg gGACCGTAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32138028 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 32173604 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 32195966 . A C 3.54 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,34:2:0:0/1:32 +chr11 32199845 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 32207989 . tagc t 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 32216746 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 32237644 . gc gCGTc 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 32240520 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32265025 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 32301409 . G GAAC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 32309004 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 32318493 . A ACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32334881 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 32346738 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32391939 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 32405216 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 32410774 . A G 99 . DP=42;AF1=1;CI95=1,1;DP4=0,1,0,32;MQ=48;PV4=1,0.44,0.21,1 PL:DP:SP:GT:GQ 167,73,0:33:0:1/1:99 +chr11 32417945 . T C 17.6 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=50 PL:DP:SP:GT:GQ 50,12,0:4:0:1/1:72 +chr11 32421238 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32423931 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32444653 . TA TACGGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32460575 . T C 55 . DP=39;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49 PL:DP:SP:GT:GQ 88,24,0:8:0:1/1:96 +chr11 32480747 . T TTGGACGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32507980 . gt gTACCTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32580507 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 32596128 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 32613307 . A C 4.13 . DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.077,0.33,0.48 PL:DP:SP:GT:GQ 32,0,27:3:0:0/1:29 +chr11 32617537 . A T 19.1 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=2,9,7,0;MQ=49;PV4=0.0023,0.0057,0.00015,1 PL:DP:SP:GT:GQ 49,0,220:18:26:0/1:52 +chr11 32623264 . G C 29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr11 32623392 . C A 10.1 . DP=11;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,0.16,0.18 PL:DP:SP:GT:GQ 39,0,5:5:0:0/1:7 +chr11 32637534 . TT TTAAGAAT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 41,0,66:3:0:0/1:44 +chr11 32690735 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32697415 . A T 41.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 32725373 . G C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 32737084 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 32765111 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 32797665 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 32860135 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 32874926 . G A 66 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=5,1,15,1;MQ=49;PV4=0.48,2.4e-16,0.00054,1 PL:DP:SP:GT:GQ 96,0,172:22:3:0/1:99 +chr11 32876117 . a aTCGAGAGCG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 32882542 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 32896345 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 32938303 . a aACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32949711 . CT CACTCGAAGCTAT 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,48:3:0:0/1:43 +chr11 32949712 . TGA TGAGA 5.08 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,62:3:0:0/1:44 +chr11 32954344 . G A 99 . DP=40;AF1=1;CI95=1,1;DP4=0,1,10,22;MQ=49;PV4=1,0.016,0.29,1 PL:DP:SP:GT:GQ 208,69,0:33:0:1/1:99 +chr11 32956244 . A G 25.5 . DP=48;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=50 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr11 33011950 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33022591 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33046340 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 33053107 . C T 99 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=6,24,4,17;MQ=48;PV4=1,2e-06,4.7e-16,1 PL:DP:SP:GT:GQ 221,0,255:51:0:0/1:99 +chr11 33054794 . T G 4.77 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.087,0.33,1 PL:DP:SP:GT:GQ 33,0,35:3:0:0/1:34 +chr11 33065547 . G A 20.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.032,0.21,0.44 PL:DP:SP:GT:GQ 50,0,38:4:0:0/1:41 +chr11 33076191 . T C 99 . DP=56;AF1=1;CI95=1,1;DP4=0,1,24,26;MQ=49;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 255,136,0:51:0:1/1:99 +chr11 33090071 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 33091162 . a aAGTCTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33113912 . T G 7.01 . DP=5;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,2;MQ=42;PV4=1,0.38,0.13,1 PL:DP:SP:GT:GQ 36,0,17:3:0:0/1:20 +chr11 33120514 . AG AGCGATGG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,40:3:0:0/1:40 +chr11 33127651 . tt tTGt 5.09 . INDEL;DP=3;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,23:3:0:0/1:26 +chr11 33131862 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33137264 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33137812 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 33147898 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33158355 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 33180533 . taaaaaaaaaa tAAAAaaaaaaaaaa 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 33181305 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33248940 . c cCGTCGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33279426 . CT CTAGAGTT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 33360886 . ATTTT ATTT 99 . INDEL;DP=38;AF1=1;CI95=1,1;DP4=1,0,25,7;MQ=50;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 202,74,0:33:0:1/1:99 +chr11 33363286 . A T 15.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr11 33385731 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33409710 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 33424367 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33466974 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 33477732 . A AGT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 33540956 . ACCAAT A 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 33582653 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33590827 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 33592990 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 33627646 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33639772 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 33655933 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33697030 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33706728 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 33707952 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 33710684 . g gGCGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33720208 . GAAAAC G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33729569 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33758289 . TTTTTTTAAGT TT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 33763459 . A T 3.01 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,0,2;MQ=49;PV4=0.47,1,0.00092,1 PL:DP:SP:GT:GQ 30,0,61:6:3:0/1:33 +chr11 33768917 . T A 7.02 . DP=15;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.33,0.11,1 PL:DP:SP:GT:GQ 36,0,16:3:0:0/1:19 +chr11 33775365 . GCAA G 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 33779791 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 33781062 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 33790382 . C A 4.77 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,1,1;MQ=48;PV4=1,0.022,0.086,1 PL:DP:SP:GT:GQ 33,0,83:5:0:0/1:36 +chr11 33805980 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33809233 . AA AAGA 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr11 33814401 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33824152 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33837577 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33874938 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33881016 . T C 11.1 . DP=57;AF1=0.6243;CI95=0.5,1;DP4=0,1,2,1;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 40,0,4:4:0:0/1:6 +chr11 33882427 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 33910095 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33974492 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 33976083 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 33980239 . gg gGAAAATg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33981377 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33985853 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33988760 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 33996399 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34020017 . ca cAGTAAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34029005 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 34067924 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 34080106 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 34107785 . G A 47.5 . DP=15;AF1=0.8277;CI95=0.5,1;DP4=1,0,1,4;MQ=49;PV4=0.33,1,0.25,1 PL:DP:SP:GT:GQ 76,0,1:6:0:1/1:5 +chr11 34112132 . G A 8.64 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,18,4,0;MQ=49;PV4=0.00014,5.8e-09,6e-09,1 PL:DP:SP:GT:GQ 38,0,237:22:39:0/1:41 +chr11 34113717 . C T 99 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=44 PL:DP:SP:GT:GQ 157,21,0:7:0:1/1:84 +chr11 34120979 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34134217 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34134219 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34152396 . A G 25 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=19,1,0,10;MQ=49;PV4=3.7e-07,1.7e-10,0.00019,0.017 PL:DP:SP:GT:GQ 55,0,255:30:64:0/1:58 +chr11 34152939 . T C 99 . DP=32;AF1=1;CI95=1,1;DP4=0,0,8,14;MQ=47 PL:DP:SP:GT:GQ 255,66,0:22:0:1/1:99 +chr11 34153156 . T C 17.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 34154641 . C T 28 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=1,2,3,2;MQ=49;PV4=1,0.18,0.11,1 PL:DP:SP:GT:GQ 58,0,61:8:0:0/1:59 +chr11 34158411 . A G 99 . DP=17;AF1=1;CI95=1,1;DP4=1,0,1,12;MQ=47;PV4=0.14,1,0.3,0.21 PL:DP:SP:GT:GQ 159,24,0:14:0:1/1:96 +chr11 34158431 . T C 63.3 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=43 PL:DP:SP:GT:GQ 96,15,0:5:0:1/1:75 +chr11 34160693 . A C 12 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 34173781 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 34176214 . A G 71.1 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=45 PL:DP:SP:GT:GQ 104,21,0:7:0:1/1:84 +chr11 34189577 . A AGTTCC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,0.47,1,1 PL:DP:SP:GT:GQ 38,0,52:3:0:0/1:41 +chr11 34201285 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 34201799 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34214104 . A AAGGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34219090 . T C 5.51 . DP=2;AF1=0.5079;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,15:2:0:0/1:18 +chr11 34230807 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34244065 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34244533 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 34249235 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34251812 . AGGG AGGGTTTTGTGGG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=47 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 34281762 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34326287 . T G 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 34356694 . G A 6.2 . DP=4;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,1,1;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 35,0,26:3:0:0/1:28 +chr11 34357080 . G A 29 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=11,1,7,0;MQ=49;PV4=1,0.00011,0.028,1 PL:DP:SP:GT:GQ 59,0,250:19:0:0/1:62 +chr11 34357317 . CCT CCTCT 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,0.03 PL:DP:SP:GT:GQ 38,0,91:4:0:0/1:41 +chr11 34371269 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 34385747 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34410929 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 34422183 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34475570 . T C 6.2 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.34,0.099,1 PL:DP:SP:GT:GQ 35,0,50:4:0:0/1:38 +chr11 34480511 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 34482908 . C T 99 . DP=38;AF1=1;CI95=1,1;DP4=0,1,3,20;MQ=43;PV4=1,0.055,0.0013,1 PL:DP:SP:GT:GQ 255,22,0:24:0:1/1:88 +chr11 34484806 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 34495156 . tt tTACGTCt 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34521559 . c cAGTTGTGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34558715 . a aAAT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 34567507 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 34621562 . G GAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 34621828 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 34622365 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 34653509 . C CCGGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34668143 . C T 97.1 . DP=44;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=48 PL:DP:SP:GT:GQ 130,21,0:7:0:1/1:84 +chr11 34675705 . A C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,38:2:0:0/1:34 +chr11 34689511 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 34698345 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 34723915 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34729057 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 34774483 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34848181 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34857668 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34866182 . CAGAG CAG 5.08 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 34885256 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34885271 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34907984 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34909789 . GA GACA 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.11 PL:DP:SP:GT:GQ 41,0,63:3:0:0/1:44 +chr11 34910347 . T C 3.54 . DP=9;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,2;MQ=48;PV4=0.33,0,0.26,1 PL:DP:SP:GT:GQ 31,0,39:3:0:0/1:33 +chr11 34910397 . C T 19.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,1;MQ=48;PV4=1,1,0.008,1 PL:DP:SP:GT:GQ 49,0,67:5:0:0/1:52 +chr11 34916710 . A G 20 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=48;PV4=1,0.0011,0.15,1 PL:DP:SP:GT:GQ 50,0,77:5:0:0/1:53 +chr11 34938199 . C G 33 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,0;MQ=46;PV4=0.33,0.18,1,0.2 PL:DP:SP:GT:GQ 63,0,46:6:0:0/1:49 +chr11 34938265 . C T 22.6 . DP=12;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 52,2,0:5:0:1/1:37 +chr11 34940167 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 34957651 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 34968952 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 34969022 . a aTAT 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34978876 . CTTAAT CT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 34984413 . ATG ATGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34988343 . T C 8.64 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=50;PV4=1,0.0059,0.15,1 PL:DP:SP:GT:GQ 38,0,138:9:0:0/1:41 +chr11 34997435 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 34999745 . C G 99 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,20;MQ=45;PV4=0.26,0.5,3e-08,1 PL:DP:SP:GT:GQ 196,0,160:27:0:0/1:99 +chr11 35013007 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 35063534 . G GGAAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35068916 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35093974 . g gTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35094519 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 35104949 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 35122822 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 35134386 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35143716 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 35144736 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 35171272 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 35179241 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 35179245 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35199608 . AAGCT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35223158 . T C 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,18,1;MQ=47 PL:DP:SP:GT:GQ 197,57,0:19:0:1/1:99 +chr11 35228076 . T TTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35228265 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35229673 . T C 99 . DP=50;AF1=1;CI95=1,1;DP4=1,1,40,4;MQ=49;PV4=0.21,0.0045,0.29,1 PL:DP:SP:GT:GQ 143,81,0:46:7:1/1:99 +chr11 35238223 . C T 3.03 . DP=2;AF1=0.5029;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,19:2:0:0/1:22 +chr11 35299504 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35306992 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35318849 . c cGTGGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35322937 . CAAAGT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35323069 . A G 44 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,12,9,0;MQ=49;PV4=3.4e-06,0.0055,0.18,1 PL:DP:SP:GT:GQ 74,0,188:21:55:0/1:77 +chr11 35333722 . A T 64 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=7,3,12,0;MQ=49;PV4=0.078,1.9e-06,0.12,1 PL:DP:SP:GT:GQ 94,0,255:22:11:0/1:97 +chr11 35342302 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 35344597 . T A 4.13 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 35358725 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35375833 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35385550 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35398966 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35430232 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35432234 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 35436461 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 35437338 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35445422 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 35453796 . GCCC GCC 36.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 76,9,0:3:0:1/1:63 +chr11 35463144 . T A 34.1 . DP=17;AF1=0.9966;CI95=0.5,1;DP4=1,0,0,4;MQ=48;PV4=0.2,1,0.16,1 PL:DP:SP:GT:GQ 63,1,0:5:0:1/1:23 +chr11 35471477 . gt gTGACCt 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35477440 . AA AAGGACTGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35499276 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 35514498 . c cAGGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35535589 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 35538629 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35602173 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35638542 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35667195 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 35673135 . GCC GCCTCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35681265 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35685046 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35685913 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 35710124 . T TCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35743844 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 35750399 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35766286 . ac aCTGCTCTCCTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35772393 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35773785 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 35852373 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35853102 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35859466 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 35863139 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35866463 . A AACCTGGAACAGAGT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 35874622 . C CAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35876164 . t tCAATCTAAA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 35882333 . G GATA 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 35886641 . C CGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35891379 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 35902231 . tct tCTATCCCCCct 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 35933673 . CCAG CCAGATCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35934553 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35951276 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35956312 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35988735 . C G 17.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 36001569 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36005980 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36019129 . GG GGTG 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.099 PL:DP:SP:GT:GQ 41,0,57:3:0:0/1:44 +chr11 36052038 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36054918 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36054922 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36057626 . G A 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=5,0,19,0;MQ=44;PV4=1,0.17,2.6e-09,1 PL:DP:SP:GT:GQ 194,0,96:24:0:0/1:99 +chr11 36068681 . t tAAGTACTA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 36082574 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36089462 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36103442 . C G 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=49;PV4=1,0.0024,0.11,1 PL:DP:SP:GT:GQ 55,0,149:9:0:0/1:58 +chr11 36111766 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36126586 . AAG AAGGAG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 36139587 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36143908 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 36161480 . T C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36170519 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36177332 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 36182732 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 36186336 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 36188160 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36199824 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36208585 . GC GCTC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 36293376 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 36298790 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 36319001 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36353311 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36355625 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36377938 . c cT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 36388510 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36422009 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36422792 . G A 33 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=48 PL:DP:SP:GT:GQ 65,9,0:3:0:1/1:63 +chr11 36426648 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 36430442 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36453506 . T C 4.13 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=0,17,0,5;MQ=49;PV4=1,1.9e-06,0.00023,0.27 PL:DP:SP:GT:GQ 32,0,235:22:0:0/1:35 +chr11 36456774 . T TGCTCACTG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36461501 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36486677 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36519286 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36523001 . G T 11.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,3;MQ=48;PV4=1,0.17,1,1 PL:DP:SP:GT:GQ 41,0,36:6:0:0/1:38 +chr11 36535278 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36553439 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36565065 . G GAGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 36581698 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36581714 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36582338 . c cGTATG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 36588090 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 36590712 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36594945 . A C 3.01 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=2,5,0,3;MQ=48;PV4=1,0.071,0.28,0.22 PL:DP:SP:GT:GQ 30,0,175:10:0:0/1:33 +chr11 36595277 . A T 9.52 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=12,7,0,6;MQ=49;PV4=0.015,0.029,0.00033,1 PL:DP:SP:GT:GQ 39,0,255:25:18:0/1:42 +chr11 36595600 . A G 99 . DP=34;AF1=1;CI95=1,1;DP4=1,0,15,11;MQ=49;PV4=1,1,0.39,1 PL:DP:SP:GT:GQ 176,65,0:27:0:1/1:99 +chr11 36596023 . A C 23 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,6,3,2;MQ=48;PV4=0.29,0.048,0.014,1 PL:DP:SP:GT:GQ 53,0,139:13:5:0/1:56 +chr11 36602488 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36605779 . C CT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36614049 . AA AACGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 36641638 . GC GCAGACTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 36641890 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36669778 . C T 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=47 PL:DP:SP:GT:GQ 161,42,0:14:0:1/1:99 +chr11 36679458 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 36695205 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 36699481 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 36708174 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 36729795 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36744884 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36847328 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36939130 . gtaata gta 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 36939752 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36942974 . g gAGAAAGACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 36992725 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37013012 . G GGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37039244 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 37058008 . AACA AACACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37087803 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 37138535 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 37164206 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 37283598 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37305420 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37314702 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37385310 . ggagctt g 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 37403880 . A AAGGGGTTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37407226 . A T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 37460942 . A T 13.2 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr11 37481558 . Ga GACa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37506223 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37511693 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37537011 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37564379 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37566336 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37574388 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 37579710 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 37602220 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37643679 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 37691508 . T A 6.98 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,1,1,1;MQ=40;PV4=1,0,1,1 PL:DP:SP:GT:GQ 36,3,0:3:0:1/1:41 +chr11 37731862 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 37740372 . ggt gGTgt 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 37809774 . T TCTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37823489 . g gTAA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37833115 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 37908531 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 37916370 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 37966487 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37967509 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38028488 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 38090699 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38096873 . G A 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 38115768 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38179855 . A T 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38203525 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 38219981 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38246081 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 38246951 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38273512 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38278079 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38278366 . GAT GAGTAT 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 38279570 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 38309702 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38309714 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38331053 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38364432 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38377454 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38388537 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 38390163 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38398123 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38434803 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38435604 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38458179 . GA GAAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 38460770 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38469564 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38469977 . G A 59.6 . DP=12;AF1=0.5939;CI95=0.5,1;DP4=1,0,8,0;MQ=48;PV4=1,0.088,0.2,1 PL:DP:SP:GT:GQ 89,0,5:9:0:0/1:7 +chr11 38477046 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 38499681 . t tGTGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 38500860 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38554358 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38599186 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 38632881 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38639936 . c cCCAGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 38696269 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38734907 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38878133 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38880745 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 38897677 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38899188 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 38913320 . A T 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 38962962 . T TGACTGGCGTCCCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 38976749 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38991580 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39018686 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39077171 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 39079708 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 39103026 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 39154389 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 39189582 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39197755 . c cACAACCTA 8 . INDEL;DP=3;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,0;MQ=36;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,4:2:0:0/1:6 +chr11 39222291 . TT TTCTCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39252262 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 39272246 . cac cACAAac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39356385 . at aTCTGCTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39371163 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39371173 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39397430 . T TACATCGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39402641 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39407476 . TT TTTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39460199 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39511890 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 39513706 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39527509 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 39573078 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39573251 . TG TGGAAGTGTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39575073 . a aCTTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39579168 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39579174 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39586031 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 39609323 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 39617536 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39648646 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 39681596 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39683803 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39734779 . A ACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39742752 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39743240 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 39762852 . ca cAGTCCGTGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39796334 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 39798428 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39896769 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 39930981 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39963209 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39967331 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39969511 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39971551 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 39995887 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 40020836 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 40041506 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 40095732 . ATG ATGTTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 40105471 . T C 4.77 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,1,0,0.36 PL:DP:SP:GT:GQ 33,0,46:3:0:0/1:36 +chr11 40106099 . G A 7.82 . DP=3;AF1=0.5031;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.33,0.26,0.42 PL:DP:SP:GT:GQ 37,0,19:3:0:0/1:22 +chr11 40141411 . C A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 40153106 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40234372 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 40258983 . G C 5.46 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,36:2:0:0/1:35 +chr11 40265874 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 40269627 . T TTCACTCCGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 40302270 . T A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 40314056 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40321990 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 40380830 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 40431923 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40459871 . a aGGTCTTCAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 40477890 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 40479826 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 40500884 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 40506807 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 40584125 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 40586724 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40602498 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 40615412 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 40641220 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 40722735 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40726202 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 40731818 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 40741714 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 40752561 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 40775075 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40824001 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40847164 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40896503 . G C 3.6 . DP=2;AF1=0.5127;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,13:2:0:0/1:16 +chr11 40911137 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 40954168 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 40963498 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40963506 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40979024 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40992646 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 41039947 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41045465 . TTC TTCCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 41066382 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41088231 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 41122445 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 41143165 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41154177 . TT TTCACAGAAGT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 41220801 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 41226504 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 41274971 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41341906 . G GTTC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 41351626 . a aGAG 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 41355680 . AGCCTC A 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 41369943 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 41383658 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 41425296 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41426239 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 41435960 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41522488 . T TAAG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 41558243 . TC TCGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 41561364 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 41615136 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 41619782 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41693425 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41727668 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41787169 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 41787176 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41794573 . ca cATAa 7.35 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 41842069 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 41860291 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 41864078 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41875474 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 41889106 . GT GTTT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 41938805 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 41968254 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41975299 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 42019759 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42049835 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42065103 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42076260 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 42098613 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42102838 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42185040 . gt gTAAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42208546 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 42219894 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42221898 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 42254764 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42262202 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42271905 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42335834 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 42362316 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42370178 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 42413993 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42414004 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42418321 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 42429977 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42436872 . caca cACAAaca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42439778 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42459776 . g gAGGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42506955 . AAA AAACAA 10.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 42557731 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 42558859 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 42664061 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 42697542 . T TGGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42721078 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 42723913 . c cCAACGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42780327 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 42794932 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42803364 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 42805784 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42845296 . G GCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42846261 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 42865385 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 42877353 . at aTCCt 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 42883437 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 42908573 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 42920949 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42924116 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 42993228 . T C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 43012528 . T TTTTCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43027740 . g gGGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 43052337 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43077579 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43102371 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 43115807 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 43128319 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43153317 . A AAGTGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43155474 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43155495 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43205774 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 43288753 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43305249 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43340439 . A T 6.2 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 35,0,32:4:0:0/1:33 +chr11 43345026 . T C 3.01 . DP=11;AF1=0.4997;CI95=0.5,0.5;DP4=4,2,1,1;MQ=49;PV4=1,0.34,0.032,1 PL:DP:SP:GT:GQ 30,0,134:8:0:0/1:33 +chr11 43348050 . CTT CT 23.5 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=50;PV4=1,1,1,0.021 PL:DP:SP:GT:GQ 61,0,37:5:0:0/1:40 +chr11 43348052 . T A 32 . DP=23;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,5,0;MQ=46;PV4=1,1,0.27,0.43 PL:DP:SP:GT:GQ 62,0,19:7:0:0/1:22 +chr11 43374303 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43380603 . A G 4.77 . DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,30:2:0:0/1:31 +chr11 43385228 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 43415981 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 43416368 . ctg cTGTGGTtg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43427754 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 43429116 . A G 11.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,2;MQ=47;PV4=0.33,0,0,0.11 PL:DP:SP:GT:GQ 41,0,37:3:0:0/1:39 +chr11 43450639 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 43455714 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43459516 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43460242 . A ATG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 43472895 . G C 90.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=46 PL:DP:SP:GT:GQ 123,21,0:7:0:1/1:84 +chr11 43486772 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 43563267 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 43576376 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43579881 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43609366 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43681192 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43682308 . aaa aAAGGGAAGaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43740038 . G C 3.02 . DP=2;AF1=0.5017;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,21:2:0:0/1:23 +chr11 43772549 . A G 3.54 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.056,0.33,1 PL:DP:SP:GT:GQ 31,0,37:3:0:0/1:33 +chr11 43856016 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 43876435 . A G 71 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,11,1,10;MQ=49;PV4=1,7.9e-10,0.068,1 PL:DP:SP:GT:GQ 101,0,255:23:0:0/1:99 +chr11 43888186 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43893603 . TAGGAGAGCA TAGGAGAGCAGGAGAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43905440 . C G 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=43 PL:DP:SP:GT:GQ 191,27,0:9:0:1/1:99 +chr11 43911599 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43919270 . C T 6.98 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,0.35,0.019,1 PL:DP:SP:GT:GQ 36,0,52:4:0:0/1:39 +chr11 43919694 . C T 26 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr11 43919757 . A ACGTC 5.08 . INDEL;DP=21;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 43919778 . C T 16.2 . DP=30;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,2,1;MQ=47;PV4=1,0.22,0.21,1 PL:DP:SP:GT:GQ 46,0,16:4:0:0/1:19 +chr11 43919786 . C G 16.1 . DP=33;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr11 43920809 . G C 7.97 . DP=5;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 37,0,10:3:0:0/1:13 +chr11 43920979 . G A 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,14,4;MQ=49 PL:DP:SP:GT:GQ 193,54,0:18:0:1/1:99 +chr11 43930835 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43940644 . G T 44.1 . DP=71;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 77,18,0:6:0:1/1:90 +chr11 43949796 . C CTGAGAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43953005 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 43965485 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 43981127 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43989021 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44012074 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 44025832 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44033087 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44033613 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44063178 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44069487 . GACC GACCGCTCACC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr11 44080210 . T C 54 . DP=27;AF1=0.9999;CI95=0.5,1;DP4=1,0,1,6;MQ=49;PV4=0.25,0.47,0.29,1 PL:DP:SP:GT:GQ 84,3,0:8:0:1/1:41 +chr11 44089161 . G A 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=44 PL:DP:SP:GT:GQ 210,27,0:9:0:1/1:99 +chr11 44089570 . G C 19.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 44104701 . CCTCT CCTCTCT 99 . INDEL;DP=44;AF1=1;CI95=1,1;DP4=0,0,29,11;MQ=50 PL:DP:SP:GT:GQ 255,117,0:40:0:1/1:99 +chr11 44104704 . CT CTAT 10.8 . INDEL;DP=47;AF1=0.5;CI95=0.5,0.5;DP4=2,2,2,0;MQ=50;PV4=0.47,1,1,1 PL:DP:SP:GT:GQ 48,0,92:6:3:0/1:51 +chr11 44116575 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 44124063 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 44124859 . at aTACACTACTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44126740 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 44129500 . C G 29 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=3,4,0,5;MQ=48;PV4=0.2,0.0095,0.14,1 PL:DP:SP:GT:GQ 59,0,202:12:7:0/1:62 +chr11 44135743 . T G 30 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=23,1,0,13;MQ=49;PV4=3.9e-09,2.7e-05,0.0053,1 PL:DP:SP:GT:GQ 60,0,251:37:84:0/1:63 +chr11 44137271 . G GTGTCTGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44146257 . A G 91.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=45 PL:DP:SP:GT:GQ 124,18,0:6:0:1/1:90 +chr11 44159465 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44166138 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 44180127 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44207579 . T TCTGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44253242 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 44255614 . T C 34.6 . DP=23;AF1=0.5939;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,0.44,0.27,1 PL:DP:SP:GT:GQ 64,0,5:6:0:0/1:7 +chr11 44256742 . G GGCCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 44258151 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 44286566 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44289312 . C G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 44290126 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 44297054 . T C 81 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=0,2,7,2;MQ=48;PV4=0.11,0.0093,0.16,1 PL:DP:SP:GT:GQ 111,0,41:11:10:0/1:44 +chr11 44339887 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 44373997 . A AGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44376398 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 44387746 . c cTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44388523 . AC ACGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44394109 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44394875 . tccctgcc tcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44426935 . T C 4.29 . DP=3;AF1=0.5334;CI95=0.5,1;DP4=1,0,0,2;MQ=49;PV4=0.33,1,0.17,0.014 PL:DP:SP:GT:GQ 32,0,9:3:0:0/1:12 +chr11 44434039 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 44456233 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44482752 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44501355 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 44511261 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 44515773 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44526311 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44586337 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44619041 . T TCACTCTTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44626519 . A G 4.77 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=5,1,4,0;MQ=47;PV4=1,0.16,0.13,1 PL:DP:SP:GT:GQ 33,0,102:10:0:0/1:36 +chr11 44636839 . C T 25 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=9,2,3,1;MQ=49;PV4=1,0.00096,0.00028,1 PL:DP:SP:GT:GQ 55,0,255:15:0:0/1:58 +chr11 44639921 . C T 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.042,0.26,1 PL:DP:SP:GT:GQ 36,0,41:3:0:0/1:38 +chr11 44640533 . GGT GGTAGTGTGT 5.84 . INDEL;DP=7;AF1=0.508;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,15:2:0:0/1:18 +chr11 44640640 . C G 79.1 . DP=31;AF1=0.508;CI95=0.5,0.5;DP4=1,2,3,7;MQ=47;PV4=1,1,0.018,1 PL:DP:SP:GT:GQ 109,0,15:13:0:0/1:18 +chr11 44640640 . CCAT CCATGCAT 39.5 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=4,3,2,1;MQ=50;PV4=1,1,1,0.022 PL:DP:SP:GT:GQ 77,0,71:10:0:0/1:73 +chr11 44652449 . AGCATGATGTC A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44655411 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44666785 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44733207 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44753212 . G A 10.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 44801298 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44804083 . a aGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44815829 . A AGC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 44822952 . tg tGCAg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44837942 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44870405 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44886820 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 44936569 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44940873 . G A 40 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=1,21,0,20;MQ=50;PV4=1,1.5e-20,0.15,1 PL:DP:SP:GT:GQ 70,0,255:42:0:0/1:73 +chr11 44952285 . C T 7.8 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr11 44952861 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44959213 . C T 66 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,7;MQ=47;PV4=1,5.9e-05,0.0063,1 PL:DP:SP:GT:GQ 96,0,176:14:0:0/1:99 +chr11 44965433 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45000079 . gt gTTAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45029635 . GAA GAAGTCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45047451 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45153083 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 45170112 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45181575 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 45217713 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45221925 . TA TATCA 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 45226752 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45235111 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45250197 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45250260 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 45250965 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45252552 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 45292837 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45304685 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45312823 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45313736 . tt tTAAGCCt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 45314528 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45327122 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45341451 . TGAG TGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45345784 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45366481 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45407206 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 45445919 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 45464231 . T G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 45479795 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45486101 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 45494826 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45503783 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45533074 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45535938 . GC GCTTC 16.6 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,6,2,0;MQ=50;PV4=0.46,1,1,0.05 PL:DP:SP:GT:GQ 54,0,255:13:3:0/1:57 +chr11 45544983 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45552371 . T A 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 45563420 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45567354 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 45581596 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45587691 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45588670 . g gCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 45591425 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45611346 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45620941 . c cCA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 45621263 . A AGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 45622153 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45622155 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 45624776 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45642689 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 45681521 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 45682825 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45694198 . ctg cTGtg 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 45698366 . TTT TTTATT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 45714460 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45718182 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 45720364 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 45789384 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45792792 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45831049 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 45832574 . G C 3.01 . DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=1,3,1,1;MQ=48;PV4=1,0.18,8.2e-06,0.24 PL:DP:SP:GT:GQ 30,0,102:6:0:0/1:33 +chr11 45833857 . G GGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45867596 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45877529 . A G 11.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=8,0,4,0;MQ=50;PV4=1,0.0072,0.045,1 PL:DP:SP:GT:GQ 41,0,178:12:0:0/1:44 +chr11 45903824 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45916231 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45919834 . G GAC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 38,0,97:4:0:0/1:41 +chr11 45923635 . A G 7.89 . DP=5;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,13:2:0:0/1:16 +chr11 45925494 . G T 10.4 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=11,0,4,0;MQ=48;PV4=1,0.016,0.0011,1 PL:DP:SP:GT:GQ 40,0,202:15:0:0/1:43 +chr11 45926079 . C T 18.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,9,0,5;MQ=49;PV4=1,1.2e-05,0.19,1 PL:DP:SP:GT:GQ 48,0,248:15:0:0/1:51 +chr11 45926445 . T C 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=3,14,8,12;MQ=49;PV4=0.17,5e-12,0.0019,1 PL:DP:SP:GT:GQ 177,0,255:37:8:0/1:99 +chr11 45926554 . A G 9.52 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,1;MQ=47;PV4=1,0.19,0.047,1 PL:DP:SP:GT:GQ 39,0,90:5:0:0/1:42 +chr11 45926772 . T A 3.01 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=46;PV4=1,0.18,0.21,1 PL:DP:SP:GT:GQ 30,0,39:4:0:0/1:32 +chr11 45926783 . C A 8.64 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,3;MQ=47;PV4=1,0.39,0.43,0.017 PL:DP:SP:GT:GQ 38,0,83:8:0:0/1:41 +chr11 45926787 . G T 17.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,5;MQ=45;PV4=0.29,0.012,0.21,0.17 PL:DP:SP:GT:GQ 47,0,41:7:0:0/1:43 +chr11 45930504 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 45932382 . GTCA GTCAACTCA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=49;PV4=1,1,1,0.28 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr11 45932811 . GC GCCAAAGACCAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45935384 . A G 59 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,6,1,4;MQ=48;PV4=1,0.0024,0.00054,1 PL:DP:SP:GT:GQ 89,0,245:13:0:0/1:92 +chr11 45935527 . T C 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,1,0;MQ=48;PV4=0.33,0.029,0,0.42 PL:DP:SP:GT:GQ 34,0,83:3:0:0/1:37 +chr11 45937267 . C T 99 . DP=31;AF1=1;CI95=0.5,1;DP4=1,1,15,9;MQ=44;PV4=1,1,2.1e-05,1 PL:DP:SP:GT:GQ 255,8,0:26:0:1/1:56 +chr11 45942347 . GGCC G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45944994 . GC GCC 99 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=9,0,16,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 174,0,107:25:0:0/1:99 +chr11 45948577 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 45949201 . C T 72 . DP=12;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,1,8;MQ=48;PV4=1,0.0006,0.27,0.037 PL:DP:SP:GT:GQ 102,0,20:10:0:0/1:23 +chr11 45955788 . G C 8.64 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,3;MQ=49;PV4=0.048,0.26,0.0071,0.4 PL:DP:SP:GT:GQ 38,0,119:9:13:0/1:41 +chr11 45955791 . A G 7.8 . DP=15;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,0,2;MQ=47;PV4=0.33,0.042,0.13,0.25 PL:DP:SP:GT:GQ 37,0,29:3:0:0/1:31 +chr11 45959669 . C T 3.73 . DP=29;AF1=0.5429;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 31,0,8:3:0:0/1:11 +chr11 45975130 . C T 48 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=5,14,0,10;MQ=49;PV4=0.13,9.1e-08,0.00022,1 PL:DP:SP:GT:GQ 78,0,255:29:9:0/1:81 +chr11 46000327 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46001229 . G C 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,39,1;MQ=49 PL:DP:SP:GT:GQ 144,120,0:40:0:1/1:99 +chr11 46012422 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46023589 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 46041783 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 46070770 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46078164 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46080163 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 46095461 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 46098163 . C CCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46105688 . G A 45.1 . DP=32;AF1=1;CI95=0.5,1;DP4=1,0,11,0;MQ=49;PV4=1,0.49,1,0.44 PL:DP:SP:GT:GQ 78,18,0:12:0:1/1:90 +chr11 46132492 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46168152 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46186105 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46226526 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 46237581 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 46239908 . T TGAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46257134 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46271539 . T TCTTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46292032 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46301282 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 46312335 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 46316485 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46323407 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 46340186 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 46356458 . caga c 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 46379549 . C CAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46389282 . T C 5.46 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.022,0.14,1 PL:DP:SP:GT:GQ 34,0,109:5:0:0/1:37 +chr11 46392825 . C G 68 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=5,1,7,1;MQ=48;PV4=1,0.0091,0.02,1 PL:DP:SP:GT:GQ 98,0,135:14:0:0/1:99 +chr11 46398648 . T G 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 46400475 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46406868 . TCCA T 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 46411920 . G GTCGTC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 46417895 . C CGCCGGA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 46431548 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46434462 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46436337 . A AACCTGGCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 46439707 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 46443443 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 46478629 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46507390 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 46519023 . GC GCCTCCTCTCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46541208 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46625014 . A C 19.4 . DP=10;AF1=0.543;CI95=0.5,1;DP4=1,0,4,0;MQ=45;PV4=1,0.28,1,0.43 PL:DP:SP:GT:GQ 49,0,8:5:0:0/1:11 +chr11 46649673 . g gTCCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46679900 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 46686823 . C G 4.77 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,0.14,0.0013,0.17 PL:DP:SP:GT:GQ 33,0,72:5:0:0/1:36 +chr11 46691495 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46695977 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46702160 . C T 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 46702646 . G C 37 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,7;MQ=49;PV4=0.007,0.00068,0.18,0.14 PL:DP:SP:GT:GQ 67,0,207:15:22:0/1:70 +chr11 46702920 . T C 5.29 . DP=41;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 46703775 . GGCG GG 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 46704935 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 46716846 . T G 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 46722515 . A G 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 46722731 . T C 47.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 80,12,0:4:0:1/1:72 +chr11 46727011 . TT TTGAGT 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 46729507 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 46745003 . C T 60.8 . DP=24;AF1=1;CI95=0.5,1;DP4=0,2,0,13;MQ=48;PV4=1,1,0.039,0.15 PL:DP:SP:GT:GQ 93,10,0:15:0:1/1:60 +chr11 46765194 . C CCGTGAAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46776697 . A G 31.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 63,6,0:2:0:1/1:49 +chr11 46791430 . T TACGCTC 7.49 . INDEL;DP=8;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 46793963 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 46798676 . ct cTCGATCTTGTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46801561 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46804973 . A G 39.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 72,12,0:4:0:1/1:72 +chr11 46818549 . T G 4.53 . DP=7;AF1=0.5938;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 32,0,5:3:0:0/1:7 +chr11 46839939 . GTGAC GTCTTCTCTGAC 3.25 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr11 46839944 . AA ACGA 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,0.33,1,1 PL:DP:SP:GT:GQ 38,0,88:3:0:0/1:41 +chr11 46878432 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46880675 . G C 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=2,6,4,0;MQ=47;PV4=0.061,0.026,0.14,0.14 PL:DP:SP:GT:GQ 41,0,206:12:12:0/1:44 +chr11 46885568 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46890197 . G A 13.2 . DP=34;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr11 46897446 . G A 99 . DP=39;AF1=1;CI95=1,1;DP4=0,0,18,16;MQ=47 PL:DP:SP:GT:GQ 255,102,0:34:0:1/1:99 +chr11 46897972 . G C 22 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 46900659 . G T 99 . DP=40;AF1=1;CI95=1,1;DP4=1,0,20,16;MQ=48;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 255,92,0:37:0:1/1:99 +chr11 46910925 . C G 8.64 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,5,3,0;MQ=48;PV4=0.048,1,0.00087,1 PL:DP:SP:GT:GQ 38,0,77:9:13:0/1:41 +chr11 46913037 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46914583 . T C 31 . DP=27;AF1=0.6671;CI95=0.5,1;DP4=0,1,1,3;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 60,0,3:5:0:0/1:5 +chr11 46914598 . A G 99 . DP=31;AF1=1;CI95=1,1;DP4=1,0,16,5;MQ=44;PV4=1,1,0.00011,1 PL:DP:SP:GT:GQ 255,41,0:22:0:1/1:99 +chr11 46918580 . C T 7.8 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,3;MQ=48;PV4=1,0.028,0.024,0.075 PL:DP:SP:GT:GQ 37,0,102:8:0:0/1:40 +chr11 46921593 . AA AACA 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,37:2:0:0/1:39 +chr11 46921978 . C A 4.77 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,0.38,0.029,0.29 PL:DP:SP:GT:GQ 33,0,40:4:0:0/1:35 +chr11 46940272 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 46954666 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 46963530 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 46965380 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 46999921 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 47028139 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 47036563 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 47040177 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 47042466 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47089210 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47106002 . at aTGATCATTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47117332 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 47130856 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 47152677 . A ACAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 47179864 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47182774 . G T 57.4 . DP=17;AF1=1;CI95=0.5,1;DP4=0,1,0,8;MQ=47;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 90,13,0:9:0:1/1:65 +chr11 47182914 . T A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 47188314 . T C 18.7 . DP=25;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,5;MQ=48;PV4=1,0.042,0.35,1 PL:DP:SP:GT:GQ 48,0,5:6:0:0/1:7 +chr11 47193367 . T G 45.5 . DP=32;AF1=0.9998;CI95=0.5,1;DP4=0,1,1,5;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 75,2,0:7:0:1/1:37 +chr11 47196982 . C T 17.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr11 47201924 . G A 39.5 . DP=22;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,6;MQ=48;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 69,0,6:7:0:0/1:8 +chr11 47207831 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47220619 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 47222000 . aT aTTTCTCAATCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47228971 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47228978 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47238522 . T C 99 . DP=55;AF1=0.7303;CI95=0.5,1;DP4=1,1,9,6;MQ=48;PV4=1,0.073,0.11,1 PL:DP:SP:GT:GQ 141,0,2:17:0:0/1:3 +chr11 47238665 . A G 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 47260272 . T C 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 47260448 . A T 10.2 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 47266808 . T G 60.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 93,18,0:6:0:1/1:90 +chr11 47269159 . T C 25.2 . DP=10;AF1=0.7303;CI95=0.5,1;DP4=1,0,3,0;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 54,0,2:4:0:0/1:3 +chr11 47270255 . C T 44.3 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 77,15,0:5:0:1/1:75 +chr11 47270443 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 47281821 . A G 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47282024 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,11,6;MQ=46 PL:DP:SP:GT:GQ 227,51,0:17:0:1/1:99 +chr11 47294725 . A ACATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47305669 . T G 16.6 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 49,12,0:4:0:1/1:72 +chr11 47306585 . G A 99 . DP=57;AF1=1;CI95=1,1;DP4=0,1,24,22;MQ=48;PV4=0.49,1,0.15,1 PL:DP:SP:GT:GQ 255,121,0:47:0:1/1:99 +chr11 47310617 . TTCTCT TTCTCTCT,TACCTCTCT 4.59 . INDEL;DP=18;AF1=0.5336;CI95=0.5,1;DP4=0,2,0,5;MQ=50;PV4=1,1,1,0.014 PL:DP:SP:GT:GQ 44,4,27,13,0,39:7:0:0/1:12 +chr11 47312374 . A G 32.8 . DP=33;AF1=1;CI95=0.5,1;DP4=0,2,1,26;MQ=50;PV4=1,2.3e-07,0.34,1 PL:DP:SP:GT:GQ 65,10,0:29:0:1/1:60 +chr11 47314247 . T C 6.79 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 47315428 . A C 36 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,0;MQ=48;PV4=0.33,0.12,0.0082,1 PL:DP:SP:GT:GQ 66,0,56:6:0:0/1:59 +chr11 47317042 . T C 54 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=6,0,11,0;MQ=48;PV4=1,0.0064,0.3,1 PL:DP:SP:GT:GQ 84,0,83:17:0:0/1:83 +chr11 47317625 . CAAAAGAAAA CAAAA 99 . INDEL;DP=12;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=50 PL:DP:SP:GT:GQ 235,30,0:10:0:1/1:99 +chr11 47318182 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47331116 . T C 83.5 . DP=72;AF1=1;CI95=0.5,1;DP4=1,0,2,8;MQ=48;PV4=0.27,0.23,0.24,1 PL:DP:SP:GT:GQ 115,7,0:11:0:1/1:57 +chr11 47333594 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47345100 . T C 46.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 79,12,0:4:0:1/1:72 +chr11 47348237 . G T 32 . DP=12;AF1=0.5001;CI95=0.5,0.5;DP4=4,0,6,0;MQ=49;PV4=1,1,0.032,1 PL:DP:SP:GT:GQ 62,0,33:10:0:0/1:36 +chr11 47350553 . G C 89 . DP=32;AF1=1;CI95=1,1;DP4=1,0,22,0;MQ=48;PV4=1,1,0.2,0.092 PL:DP:SP:GT:GQ 122,50,0:23:0:1/1:99 +chr11 47351165 . GG GGCACATTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47367655 . T A 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr11 47373249 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 47373963 . T TTTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47377118 . T TTAC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 47380593 . G A 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 47380688 . GGAAGAAGA GGAAGA 99 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 142,9,0:3:0:1/1:63 +chr11 47381271 . C A 4.15 . DP=2;AF1=0.503;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,19:2:0:0/1:22 +chr11 47385556 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47396881 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 47397352 . C T 31 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.16,0.2,0.14 PL:DP:SP:GT:GQ 61,0,51:6:0:0/1:54 +chr11 47397582 . T A 3.01 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,30:2:0:0/1:30 +chr11 47397993 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 47431728 . A G 12.7 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 45,12,0:4:0:1/1:72 +chr11 47432034 . G C 53 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=50 PL:DP:SP:GT:GQ 86,48,0:16:0:1/1:99 +chr11 47434986 . G A 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,0,20;MQ=47 PL:DP:SP:GT:GQ 156,60,0:20:0:1/1:99 +chr11 47436531 . G T 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 47439859 . C CAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47440446 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47442203 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47444568 . C CAGTCA 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 47446220 . T G 35 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=4,3,0,6;MQ=48;PV4=0.07,0.035,0.016,1 PL:DP:SP:GT:GQ 65,0,175:13:12:0/1:68 +chr11 47447346 . C T 99 . DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=44 PL:DP:SP:GT:GQ 143,24,0:8:0:1/1:96 +chr11 47447443 . G C 27 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=6,7,4,1;MQ=49;PV4=0.31,0.18,0.051,1 PL:DP:SP:GT:GQ 57,0,225:18:5:0/1:60 +chr11 47463483 . AGG AG 20.3 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 59,6,0:2:0:1/1:49 +chr11 47469439 . A G 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,3,14;MQ=45 PL:DP:SP:GT:GQ 253,51,0:17:0:1/1:99 +chr11 47488705 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47492387 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 47493976 . T A 13.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 47504534 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47537047 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 47544405 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47554538 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 47576001 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47583212 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47591060 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 47603685 . G C 40 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=9,5,0,9;MQ=47;PV4=0.0026,0.0035,0.1,1 PL:DP:SP:GT:GQ 70,0,255:23:26:0/1:73 +chr11 47631365 . G GAT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47631729 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47640313 . G C 7.8 . DP=8;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.05,0.37,1 PL:DP:SP:GT:GQ 37,0,28:4:0:0/1:30 +chr11 47640355 . C T 31 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=5,0,10,0;MQ=49;PV4=1,0.0033,0.024,1 PL:DP:SP:GT:GQ 61,0,104:15:0:0/1:64 +chr11 47640367 . T A 44 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=8,2,10,1;MQ=49;PV4=0.59,9e-09,0.3,1 PL:DP:SP:GT:GQ 74,0,248:21:2:0/1:77 +chr11 47651016 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 47653197 . C T 21 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=13,2,0,4;MQ=48;PV4=0.0039,0.056,0.0018,1 PL:DP:SP:GT:GQ 51,0,252:19:24:0/1:54 +chr11 47668963 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 47671435 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47704131 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 47722118 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 47736314 . C G 72 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=49 PL:DP:SP:GT:GQ 105,30,0:10:0:1/1:99 +chr11 47752840 . AC ACGGTC 7.39 . INDEL;DP=6;AF1=0.5063;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,16:2:0:0/1:19 +chr11 47772401 . C T 3.52 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 33,9,0:3:0:1/1:63 +chr11 47776047 . G A 67.5 . DP=45;AF1=1;CI95=0.5,1;DP4=0,1,4,2;MQ=48;PV4=0.43,1,0.2,1 PL:DP:SP:GT:GQ 99,7,0:7:0:1/1:57 +chr11 47776283 . C T 63.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 96,18,0:6:0:1/1:90 +chr11 47784993 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 47808102 . TG TGGTACATCG 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.13 PL:DP:SP:GT:GQ 41,0,61:3:0:0/1:44 +chr11 47813436 . C T 38.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 71,18,0:6:0:1/1:90 +chr11 47819426 . A T 36 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=48;PV4=1,1,0.038,1 PL:DP:SP:GT:GQ 66,0,67:12:0:0/1:66 +chr11 47826090 . A C 7.89 . DP=24;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.19,0.33,1 PL:DP:SP:GT:GQ 37,0,13:4:0:0/1:16 +chr11 47834346 . G A 44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 76,9,0:3:0:1/1:63 +chr11 47834592 . G A 91 . DP=14;AF1=1;CI95=1,1;DP4=0,0,1,11;MQ=49 PL:DP:SP:GT:GQ 124,36,0:12:0:1/1:99 +chr11 47837408 . G C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 47837638 . G A 61.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 94,18,0:6:0:1/1:90 +chr11 47857253 . T C 99 . DP=83;AF1=1;CI95=1,1;DP4=2,0,34,34;MQ=47;PV4=0.49,0.14,0.049,1 PL:DP:SP:GT:GQ 255,150,0:70:3:1/1:99 +chr11 47862868 . CC CCGC 3.25 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,86:4:0:0/1:41 +chr11 47862958 . CA CATGTGA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.061 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 47866021 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47869855 . C T 31 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,8;MQ=49;PV4=1,3.6e-07,0.036,1 PL:DP:SP:GT:GQ 61,0,199:17:0:0/1:64 +chr11 47874065 . t tACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47902560 . A ACCCGCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47904596 . a aATGAGGCTCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47944465 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47953089 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48014687 . G GAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48028007 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48029698 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48040230 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48040246 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48044432 . C CTGTCGGAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48077917 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 48079033 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48090161 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 48098070 . CTC CTCTACTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48121176 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 48144210 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48148399 . A ATGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48149652 . C A 7.8 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,5;MQ=49;PV4=1,0.29,0.0014,1 PL:DP:SP:GT:GQ 37,0,127:17:0:0/1:40 +chr11 48175315 . A T 24 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 +chr11 48181721 . G T,C 42.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=46 PL:DP:SP:GT:GQ 78,15,70,3,0,70:5:0:1/1:72 +chr11 48185875 . A G 6.2 . DP=12;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0.21,0.4 PL:DP:SP:GT:GQ 35,0,27:4:0:0/1:29 +chr11 48201427 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48214604 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 48238421 . T G 28 . DP=62;AF1=0.5005;CI95=0.5,0.5;DP4=1,1,2,3;MQ=49;PV4=1,0.35,0.17,1 PL:DP:SP:GT:GQ 58,0,27:7:0:0/1:30 +chr11 48238549 . G A 99 . DP=61;AF1=1;CI95=1,1;DP4=1,0,23,22;MQ=43;PV4=1,1,0.0019,1 PL:DP:SP:GT:GQ 255,107,0:46:0:1/1:99 +chr11 48238952 . G T 16.3 . DP=15;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,3;MQ=46;PV4=1,0.46,0.22,1 PL:DP:SP:GT:GQ 46,0,11:4:0:0/1:14 +chr11 48239182 . C A 44.5 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 77,12,0:4:0:1/1:72 +chr11 48249574 . G T 3.54 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=43;PV4=1,1,1,0.34 PL:DP:SP:GT:GQ 31,0,31:4:0:0/1:31 +chr11 48265618 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 48266582 . A C 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=48 PL:DP:SP:GT:GQ 135,42,0:14:0:1/1:99 +chr11 48267589 . A G 99 . DP=42;AF1=1;CI95=1,1;DP4=0,1,0,34;MQ=47;PV4=1,1,0.0074,1 PL:DP:SP:GT:GQ 137,85,0:35:0:1/1:99 +chr11 48273237 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48285842 . A G 3.03 . DP=60;AF1=0.5029;CI95=0.5,0.5;DP4=0,1,2,1;MQ=50;PV4=1,0.0026,1,1 PL:DP:SP:GT:GQ 30,0,19:4:0:0/1:22 +chr11 48326443 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 48328644 . C T 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,6,17;MQ=43 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr11 48342368 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48346465 . AA AACA 5.08 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 41,0,79:3:0:0/1:44 +chr11 48346916 . G C 27 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=15,25,3,9;MQ=48;PV4=0.51,2.3e-07,2.2e-05,1 PL:DP:SP:GT:GQ 57,0,255:52:3:0/1:60 +chr11 48347140 . T C 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,2,6;MQ=48 PL:DP:SP:GT:GQ 140,24,0:8:0:1/1:96 +chr11 48347267 . T C 9.52 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=18,1,5,1;MQ=49;PV4=0.43,1e-05,2.7e-06,1 PL:DP:SP:GT:GQ 39,0,255:25:4:0/1:42 +chr11 48350962 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 48367398 . C A 3.98 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 48367474 . A G 13.2 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,3;MQ=49;PV4=1,0.069,0.00012,1 PL:DP:SP:GT:GQ 43,0,209:11:0:0/1:46 +chr11 48379062 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48387348 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48387490 . G A 25 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,3;MQ=49;PV4=0.2,0.00026,0.025,0.32 PL:DP:SP:GT:GQ 55,0,195:8:7:0/1:58 +chr11 48442620 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 48486577 . T TGTGGTG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 48493622 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48494305 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48510935 . G T 5.46 . DP=24;AF1=0.4999;CI95=0.5,0.5;DP4=0,8,1,3;MQ=48;PV4=0.33,1,0.1,0.25 PL:DP:SP:GT:GQ 34,0,80:12:0:0/1:37 +chr11 48517216 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 48518693 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48526216 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 48534153 . T TCA 5.09 . INDEL;DP=3;AF1=0.5012;CI95=0.5,0.5;DP4=1,1,1,0;MQ=32;PV4=1,1,1,0.31 PL:DP:SP:GT:GQ 41,0,23:3:0:0/1:26 +chr11 48548076 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48582415 . TTA TTATGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48599744 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48609183 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 48611693 . T C 5.47 . DP=6;AF1=0.5012;CI95=0.5,0.5;DP4=1,0,0,2;MQ=44;PV4=0.33,0.0097,1,0.077 PL:DP:SP:GT:GQ 34,0,23:3:0:0/1:26 +chr11 48611800 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 48632402 . G C 10.2 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 48639840 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48643658 . C CTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48647497 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48673052 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48673967 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48711769 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48731026 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48759752 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48796808 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 48809190 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 48880851 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 48895989 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 48928633 . A G 31 . DP=14;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=14 PL:DP:SP:GT:GQ 64,39,0:13:0:1/1:99 +chr11 48961028 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48969610 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48972984 . T A 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=40 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr11 48986372 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 49000558 . G A 34.8 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=42 PL:DP:SP:GT:GQ 66,6,0:2:0:1/1:49 +chr11 49010832 . A G 27.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=37 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 49026866 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 49058963 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49059036 . T C 3.55 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49078377 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49085082 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49088611 . C G 31 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,2,3,0;MQ=36;PV4=0.1,0.074,0.33,0.4 PL:DP:SP:GT:GQ 61,0,46:5:10:0/1:49 +chr11 49090429 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49090857 . T C 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,39:2:0:0/1:35 +chr11 49176095 . T G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49194894 . G A 86 . DP=11;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=48 PL:DP:SP:GT:GQ 119,27,0:9:0:1/1:99 +chr11 49195090 . T C 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=43 PL:DP:SP:GT:GQ 197,27,0:9:0:1/1:99 +chr11 49207251 . CT CTTTT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 49207315 . A G 7.81 . DP=5;AF1=0.5015;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,22:2:0:0/1:25 +chr11 49208396 . C G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49214497 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49221996 . G GNNNNNN 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 49227620 . A G 80.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=47 PL:DP:SP:GT:GQ 113,21,0:7:0:1/1:84 +chr11 49238712 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49238722 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 49249180 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49278548 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49302478 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49302480 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49321936 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49329832 . C T 4.86 . DP=3;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,12:2:0:0/1:15 +chr11 49356723 . GC GCCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 49379830 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 49395197 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 49431337 . T G 13 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 49439649 . GA GACATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 49441583 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49455620 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49474807 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 49510608 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49516749 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 49519973 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49547633 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 49554027 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49557741 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49597799 . C T 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=46 PL:DP:SP:GT:GQ 165,27,0:9:0:1/1:99 +chr11 49598178 . G A 97.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=47 PL:DP:SP:GT:GQ 130,21,0:7:0:1/1:84 +chr11 49598393 . C T 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,0,1;MQ=48;PV4=0.33,1,0,1 PL:DP:SP:GT:GQ 32,0,64:3:0:0/1:35 +chr11 49615499 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49640097 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49645095 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49660987 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49669537 . g gTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 49686749 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 49702301 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 49742364 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49759821 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49762720 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49803946 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 49827825 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49856261 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 49856391 . T G 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49857992 . C CGT 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,72:4:0:0/1:41 +chr11 49858099 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49884040 . T A 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,1,0.089,0.42 PL:DP:SP:GT:GQ 31,0,59:3:0:0/1:34 +chr11 49893263 . T C 16.6 . DP=11;AF1=0.5718;CI95=0.5,1;DP4=1,0,3,0;MQ=47;PV4=1,1,0.0099,1 PL:DP:SP:GT:GQ 46,0,6:4:0:0/1:8 +chr11 49895365 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49903103 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 49915851 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 49942197 . C T 10.2 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 49942464 . A ATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 49964482 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 49974371 . G A 91.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=35 PL:DP:SP:GT:GQ 124,12,0:4:0:1/1:72 +chr11 49974670 . C T 82.6 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=0,1,6,0;MQ=46;PV4=0.14,1,0.17,0.21 PL:DP:SP:GT:GQ 112,0,5:7:0:0/1:7 +chr11 50049526 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50061996 . C T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50073718 . t tCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 50129637 . T TAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,38:2:0:0/1:40 +chr11 50137115 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50137127 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50161489 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50178735 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 50206012 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 50227514 . C G 14.2 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=8,0,2,2;MQ=49;PV4=0.091,0.024,0.033,0.28 PL:DP:SP:GT:GQ 44,0,156:12:10:0/1:47 +chr11 50228063 . T C 77 . DP=13;AF1=1;CI95=1,1;DP4=0,0,3,9;MQ=50 PL:DP:SP:GT:GQ 110,36,0:12:0:1/1:99 +chr11 50292828 . C T 3.15 . DP=2;AF1=0.5333;CI95=0.5,1;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,9:2:0:0/1:12 +chr11 50315625 . AC ACTGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 50331762 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 50339395 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50359342 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50375254 . T C 39 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,2,4,0;MQ=48;PV4=0.43,0.11,0.02,1 PL:DP:SP:GT:GQ 69,0,119:8:4:0/1:72 +chr11 50375336 . A G 4.13 . DP=9;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,3,0;MQ=47;PV4=0.4,0.051,0.016,1 PL:DP:SP:GT:GQ 32,0,101:6:4:0/1:35 +chr11 50384240 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 50492385 . t tCTCCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 50496551 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 50531554 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 50535272 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50544415 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 50557413 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50585085 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 50606917 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 50611519 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50710615 . t tGAGAGAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 50769256 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 51143923 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 51166058 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 51237328 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 51382549 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 51382553 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 51412453 . C T 42.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:DP:SP:GT:GQ 75,12,0:4:0:1/1:72 +chr11 51426572 . A C 48.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 81,12,0:4:0:1/1:72 +chr11 51428200 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 51434418 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 51435852 . G T 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 51436430 . A ATTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 51445883 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 51451321 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 51459023 . C A 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,1,0.013,1 PL:DP:SP:GT:GQ 48,0,39:6:0:0/1:41 +chr11 51474258 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 51487083 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 51516112 . T TGTC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 51516136 . T C 3.05 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,15:2:0:0/1:18 +chr11 51526227 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 51526880 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 51552332 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 51562907 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 54699744 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 54778245 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 54817619 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 54824101 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 54835470 . ca cATATa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 54837522 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 54872505 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 54926130 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 54990259 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 54996929 . t tTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55031314 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55035128 . A C,G 3.41 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=16 PL:DP:SP:GT:GQ 32,6,34,0,3,34:3:0:1/1:49 +chr11 55069621 . T TGACTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55076571 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 55099607 . ct cTGTTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55107774 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 55120579 . G C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55125140 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 55165739 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 55198174 . A G 64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,0;MQ=46;PV4=0.4,1,0,1 PL:DP:SP:GT:GQ 94,0,73:5:0:0/1:76 +chr11 55198310 . A G 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,4,5;MQ=42 PL:DP:SP:GT:GQ 151,27,0:9:0:1/1:99 +chr11 55223894 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 55234605 . G A 61 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,1,5,2;MQ=33;PV4=1,0.00034,0.25,0.4 PL:DP:SP:GT:GQ 91,0,107:12:0:0/1:94 +chr11 55243383 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 55245698 . G A 80.5 . DP=20;AF1=1;CI95=0.5,1;DP4=0,1,2,10;MQ=36;PV4=1,0.26,0.096,0.082 PL:DP:SP:GT:GQ 113,12,0:13:0:1/1:72 +chr11 55258754 . A G 7.02 . DP=4;AF1=0.5063;CI95=0.5,0.5;DP4=1,0,1,1;MQ=48;PV4=1,0.4,0.077,1 PL:DP:SP:GT:GQ 36,0,16:3:0:0/1:19 +chr11 55259016 . C T 6.98 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,0.07,0.43,0.46 PL:DP:SP:GT:GQ 36,0,65:4:0:0/1:39 +chr11 55290902 . ACCT ACCTGCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55322638 . C T 99 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=13,12,15,16;MQ=49;PV4=1,8.8e-10,0.0016,1 PL:DP:SP:GT:GQ 220,0,255:56:0:0/1:99 +chr11 55325881 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55327077 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 55337789 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55371095 . C T 15.1 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=16,4,0,7;MQ=49;PV4=0.00037,1.7e-05,0.0015,1 PL:DP:SP:GT:GQ 45,0,255:27:34:0/1:48 +chr11 55391145 . gtct g 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 55402980 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55432719 . C G 39 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=10,5,0,11;MQ=48;PV4=0.00072,0.0072,0.047,1 PL:DP:SP:GT:GQ 69,0,239:26:31:0/1:72 +chr11 55433604 . A G 20.2 . DP=9;AF1=0.5129;CI95=0.5,0.5;DP4=0,1,0,3;MQ=47;PV4=1,0.43,0.23,0.41 PL:DP:SP:GT:GQ 50,0,13:4:0:0/1:16 +chr11 55463373 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 55471187 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55482401 . G T 15.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr11 55482450 . G A 33.2 . DP=6;AF1=0.7303;CI95=0.5,1;DP4=1,0,5,0;MQ=30;PV4=1,1,0.081,0.11 PL:DP:SP:GT:GQ 62,0,2:6:0:0/1:3 +chr11 55488750 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 55495084 . AC ACGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55516465 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55516478 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55541098 . G A 99 . DP=53;AF1=1;CI95=1,1;DP4=1,1,22,20;MQ=47;PV4=1,1,0.037,1 PL:DP:SP:GT:GQ 255,87,0:44:0:1/1:99 +chr11 55544888 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 55562557 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 55563336 . A T 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=8,6,5,6;MQ=48;PV4=0.7,0.00035,4.9e-09,1 PL:DP:SP:GT:GQ 166,0,255:25:2:0/1:99 +chr11 55563602 . G A 8.64 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=22,24,5,7;MQ=50;PV4=0.76,6.3e-10,8.4e-05,0.45 PL:DP:SP:GT:GQ 38,0,255:58:1:0/1:41 +chr11 55563738 . G A 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=1,11,4,11;MQ=49;PV4=0.34,1.7e-07,0.093,1 PL:DP:SP:GT:GQ 152,0,246:27:5:0/1:99 +chr11 55563776 . T G 3.98 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 55587117 . T A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,17,3;MQ=44 PL:DP:SP:GT:GQ 255,60,0:20:0:1/1:99 +chr11 55587511 . A G 21.2 . DP=39;AF1=0.5163;CI95=0.5,1;DP4=0,1,0,3;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 51,0,12:4:0:0/1:15 +chr11 55594620 . AACTA AA 4.42 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 40,0,60:3:0:0/1:43 +chr11 55600616 . ta tAGCa 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 55606818 . C T 9.52 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=16,10,5,1;MQ=49;PV4=0.64,0.00033,1.8e-10,0.34 PL:DP:SP:GT:GQ 39,0,255:32:2:0/1:42 +chr11 55630066 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 55636487 . G T 3.18 . DP=2;AF1=0.5428;CI95=0.5,1;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,8:2:0:0/1:11 +chr11 55647282 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 55656403 . A C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 55656483 . T A 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,2;MQ=34;PV4=1,0.092,0.48,1 PL:DP:SP:GT:GQ 32,0,80:5:0:0/1:35 +chr11 55659174 . T G 3.6 . DP=4;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,2;MQ=45;PV4=1,0.33,0.17,0.44 PL:DP:SP:GT:GQ 31,0,13:3:0:0/1:16 +chr11 55681015 . A T 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 55681494 . G A 70.1 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=49 PL:DP:SP:GT:GQ 103,18,0:6:0:1/1:90 +chr11 55681851 . C G 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=6,14,7,6;MQ=49;PV4=0.28,1.1e-14,0.00015,1 PL:DP:SP:GT:GQ 129,0,255:33:6:0/1:99 +chr11 55688015 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55703339 . A C 4.77 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,3,0;MQ=49;PV4=0.14,0.078,0.021,1 PL:DP:SP:GT:GQ 33,0,115:8:8:0/1:36 +chr11 55703351 . T C 3.01 . DP=14;AF1=0.4997;CI95=0.5,0.5;DP4=3,2,2,1;MQ=49;PV4=1,0.023,0.021,0.29 PL:DP:SP:GT:GQ 30,0,160:8:0:0/1:33 +chr11 55709822 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 55712556 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55761528 . T C 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=12,7,13,12;MQ=49;PV4=0.55,2.7e-12,0.025,1 PL:DP:SP:GT:GQ 161,0,255:44:3:0/1:99 +chr11 55761675 . T G,C 6.02 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 54,24,35,18,0,35:3:0:1/1:49 +chr11 55781475 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55782814 . T G 53.3 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=48 PL:DP:SP:GT:GQ 86,15,0:5:0:1/1:75 +chr11 55798152 . G A 71.6 . DP=36;AF1=1;CI95=0.5,1;DP4=1,0,3,8;MQ=49;PV4=0.33,0.087,0.33,1 PL:DP:SP:GT:GQ 104,11,0:12:0:1/1:66 +chr11 55798664 . T G 15.1 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,5;MQ=48;PV4=0.061,0.038,0.041,1 PL:DP:SP:GT:GQ 45,0,150:11:12:0/1:48 +chr11 55826767 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55860780 . G A 76.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=47 PL:DP:SP:GT:GQ 109,15,0:5:0:1/1:75 +chr11 55872543 . A C 24 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=4,4,7,0;MQ=49;PV4=0.077,0.017,0.016,1 PL:DP:SP:GT:GQ 54,0,180:15:11:0/1:57 +chr11 55873024 . A G 99 . DP=15;AF1=1;CI95=0.5,1;DP4=1,0,2,4;MQ=45;PV4=0.43,1,0.031,1 PL:DP:SP:GT:GQ 152,5,0:7:0:1/1:46 +chr11 55904892 . C A,T 5.29 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 50,21,34,15,0,34:3:0:1/1:49 +chr11 55935131 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 55944048 . G C 45 . DP=7;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,5,0;MQ=47;PV4=1,0.054,1,0.43 PL:DP:SP:GT:GQ 75,0,28:6:0:0/1:31 +chr11 55947632 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55975942 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55978537 . TC TCGCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 56000403 . C G 99 . DP=27;AF1=0.5263;CI95=0.5,1;DP4=1,1,10,7;MQ=47;PV4=1,0.089,0.019,1 PL:DP:SP:GT:GQ 199,0,10:19:0:0/1:13 +chr11 56003007 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56018697 . TA TATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 56025265 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 56037732 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 56043656 . G GCATT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.39 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 56043702 . G C 14.8 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=0,1,1,1;MQ=47;PV4=1,1,0.061,1 PL:DP:SP:GT:GQ 44,0,5:3:0:0/1:7 +chr11 56058197 . G A 15.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=13,0,5,1;MQ=50;PV4=0.32,4.7e-07,0.0087,1 PL:DP:SP:GT:GQ 45,0,226:19:0:0/1:48 +chr11 56064394 . A C 3.01 . DP=6;AF1=0.4997;CI95=0.5,0.5;DP4=1,2,2,0;MQ=49;PV4=0.4,0.25,0.056,1 PL:DP:SP:GT:GQ 30,0,79:5:4:0/1:33 +chr11 56086147 . T G 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,17,18;MQ=46 PL:DP:SP:GT:GQ 255,105,0:35:0:1/1:99 +chr11 56086677 . G A 5.46 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,0,2;MQ=48;PV4=1,0.31,0.24,1 PL:DP:SP:GT:GQ 34,0,97:6:0:0/1:37 +chr11 56101006 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 56102653 . A C 32 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 +chr11 56113516 . T C 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,6,3;MQ=43 PL:DP:SP:GT:GQ 255,27,0:9:0:1/1:99 +chr11 56113575 . A G 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=15,12,9,4;MQ=49;PV4=0.5,8.7e-08,2.3e-16,1 PL:DP:SP:GT:GQ 174,0,255:40:3:0/1:99 +chr11 56128524 . C T 66.1 . DP=37;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=49 PL:DP:SP:GT:GQ 99,21,0:7:0:1/1:84 +chr11 56128679 . A T 7.8 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,1,0.022,0.17 PL:DP:SP:GT:GQ 37,0,71:9:0:0/1:40 +chr11 56215075 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56217102 . G C 16.2 . DP=7;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,3;MQ=44;PV4=1,0.17,0.11,1 PL:DP:SP:GT:GQ 46,0,15:4:0:0/1:18 +chr11 56226919 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 56237161 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56237577 . T A 30 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,5,0,8;MQ=49;PV4=0.082,0.0089,0.039,1 PL:DP:SP:GT:GQ 60,0,190:17:11:0/1:63 +chr11 56246154 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56268383 . A G 11.3 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=46;PV4=1,0.28,0.069,0.21 PL:DP:SP:GT:GQ 41,0,80:5:0:0/1:44 +chr11 56268553 . A ACTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 56289213 . T G 26 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr11 56342266 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 56382025 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 56436645 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56455997 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56463714 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56468040 . T TNNNNNNNN 84.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 124,9,0:3:0:1/1:63 +chr11 56468368 . C T 11.3 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=4,7,0,4;MQ=48;PV4=0.52,0.00013,0.0022,0.21 PL:DP:SP:GT:GQ 41,0,255:15:3:0/1:44 +chr11 56468403 . G A 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=11,13,8,10;MQ=48;PV4=1,8.8e-06,2.7e-08,1 PL:DP:SP:GT:GQ 255,0,255:42:0:0/1:99 +chr11 56468452 . A C 99 . DP=66;AF1=0.5;CI95=0.5,0.5;DP4=13,25,11,9;MQ=49;PV4=0.16,2.3e-15,8.6e-06,1 PL:DP:SP:GT:GQ 139,0,255:58:8:0/1:99 +chr11 56468637 . C T 99 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=10,19,4,10;MQ=49;PV4=1,8.1e-11,5.2e-07,0.28 PL:DP:SP:GT:GQ 146,0,255:43:0:0/1:99 +chr11 56486985 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 56489517 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 56507816 . A C 37 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,7;MQ=45;PV4=0.067,7.9e-06,0.15,1 PL:DP:SP:GT:GQ 67,0,126:12:12:0/1:70 +chr11 56507838 . A G 99 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=6,2,2,8;MQ=43;PV4=0.054,0.024,0.0013,1 PL:DP:SP:GT:GQ 195,0,226:18:13:0/1:99 +chr11 56507852 . A G 66 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,2,0,7;MQ=43;PV4=0.021,0.091,0.00024,0.038 PL:DP:SP:GT:GQ 96,0,201:14:17:0/1:99 +chr11 56508013 . A G 47 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,10,6,1;MQ=42;PV4=0.00057,0.35,6.3e-06,1 PL:DP:SP:GT:GQ 77,0,146:17:32:0/1:80 +chr11 56508220 . TGAGAG TGAGAGAGAG 52.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 91,6,0:2:0:1/1:49 +chr11 56510672 . T C,G 20 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 63,20,49,11,0,49:4:0:1/1:63 +chr11 56511365 . T C 4.13 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,1,0,0.17 PL:DP:SP:GT:GQ 32,0,35:5:0:0/1:33 +chr11 56512453 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56518197 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56534090 . T TGCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 56536623 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56536791 . AG AGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 56543918 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 56559522 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56584888 . a aGAGTGAGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 56585789 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 56686161 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56736165 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 56756664 . G A 52 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,6,2,3;MQ=49;PV4=1,0.0021,0.00023,0.13 PL:DP:SP:GT:GQ 82,0,255:15:0:0/1:85 +chr11 56790670 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56803460 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 56843077 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56876717 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 56908186 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 56925641 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 56931667 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56949844 . AC ACGCC 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,100:4:0:0/1:41 +chr11 56950264 . A G 17.2 . DP=4;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 47,0,13:3:0:0/1:16 +chr11 56983577 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56985276 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56994919 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56999643 . T G 10.2 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 57004344 . G T 99 . DP=37;AF1=1;CI95=1,1;DP4=0,1,6,14;MQ=48;PV4=1,1,0.1,1 PL:DP:SP:GT:GQ 199,41,0:21:0:1/1:99 +chr11 57021390 . c cGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57029051 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 57035139 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 57070063 . G C 6.2 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.03,0.048,1 PL:DP:SP:GT:GQ 35,0,58:4:0:0/1:38 +chr11 57077464 . T C 3.01 . DP=86;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,1,1;MQ=50;PV4=1,0.11,0.21,1 PL:DP:SP:GT:GQ 30,0,38:4:0:0/1:32 +chr11 57078115 . C G 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.038,0.12,1 PL:DP:SP:GT:GQ 34,0,52:4:0:0/1:37 +chr11 57085307 . C A 9.52 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,9,4,0;MQ=46;PV4=0.005,1.8e-05,1,0.34 PL:DP:SP:GT:GQ 39,0,231:14:23:0/1:42 +chr11 57085316 . T A 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=3,4,4,5;MQ=47;PV4=1,0.025,1.2e-07,1 PL:DP:SP:GT:GQ 201,0,203:16:0:0/1:99 +chr11 57086678 . T TTATAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57089318 . G A 5.46 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=3,2,4,0;MQ=49;PV4=0.44,0.16,0.0062,0.31 PL:DP:SP:GT:GQ 34,0,115:9:4:0/1:37 +chr11 57091438 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 57093820 . A C 11.3 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.21,0.25,1 PL:DP:SP:GT:GQ 41,0,32:5:0:0/1:34 +chr11 57094841 . TT TTTCTCT 7.46 . INDEL;DP=6;AF1=0.5163;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr11 57100489 . T A 6.98 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=1,5,3,0;MQ=49;PV4=0.048,3.4e-06,0.014,1 PL:DP:SP:GT:GQ 36,0,206:9:13:0/1:39 +chr11 57118385 . C T 66 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=0,8,6,3;MQ=48;PV4=0.009,0.069,0.0065,1 PL:DP:SP:GT:GQ 96,0,119:17:20:0/1:99 +chr11 57135663 . AGGG AGGGG 40.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 80,9,0:3:0:1/1:63 +chr11 57137016 . TCAC TCACAC 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 57137585 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 57147016 . A G 35.5 . DP=42;AF1=0.9998;CI95=0.5,1;DP4=0,1,1,8;MQ=50;PV4=1,0.0013,1,1 PL:DP:SP:GT:GQ 65,2,0:10:0:1/1:37 +chr11 57148175 . A G 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=46 PL:DP:SP:GT:GQ 164,39,0:13:0:1/1:99 +chr11 57148418 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 57152593 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57155001 . G A 54.1 . DP=27;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=49 PL:DP:SP:GT:GQ 87,18,0:6:0:1/1:90 +chr11 57155288 . T C 28.1 . DP=3;AF1=0.505;CI95=0.5,0.5;DP4=1,0,0,2;MQ=45;PV4=0.33,1,0.094,1 PL:DP:SP:GT:GQ 58,0,17:3:0:0/1:20 +chr11 57171872 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57179034 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57184218 . C T 71.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=46 PL:DP:SP:GT:GQ 104,15,0:5:0:1/1:75 +chr11 57215272 . a aAGTTT 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57241215 . G GT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 57243588 . A G 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=43 PL:DP:SP:GT:GQ 226,45,0:15:0:1/1:99 +chr11 57256537 . GGCC G 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,0.00019,1,0.25 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 57258899 . C T 6.2 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.27,0.42,1 PL:DP:SP:GT:GQ 35,0,66:7:0:0/1:38 +chr11 57303226 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 57311258 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57315663 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57319150 . AA AAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57321811 . T G 23.5 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 56,12,0:4:0:1/1:72 +chr11 57327750 . G C 19.2 . DP=7;AF1=0.5163;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0,1 PL:DP:SP:GT:GQ 49,0,12:4:0:0/1:15 +chr11 57344024 . G T 7.62 . DP=29;AF1=0.6242;CI95=0.5,1;DP4=0,1,2,1;MQ=37;PV4=1,0.22,1,1 PL:DP:SP:GT:GQ 36,0,4:4:0:0/1:6 +chr11 57348710 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 57369711 . G T 3.01 . DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=0,5,0,3;MQ=44;PV4=1,0.02,0.0097,1 PL:DP:SP:GT:GQ 30,0,136:8:0:0/1:33 +chr11 57369716 . G A 24.1 . DP=11;AF1=0.9966;CI95=0.5,1;DP4=0,1,0,5;MQ=41;PV4=1,1,0.24,0.43 PL:DP:SP:GT:GQ 53,1,0:6:0:1/1:23 +chr11 57413415 . AGGGG AGG 3.25 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,39:5:0:0/1:38 +chr11 57413943 . C G 50.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 +chr11 57424861 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57429515 . g gACGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57432560 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 57456244 . C T 90.1 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=45 PL:DP:SP:GT:GQ 123,18,0:6:0:1/1:90 +chr11 57463500 . T C 4.33 . DP=27;AF1=0.5429;CI95=0.5,1;DP4=0,1,3,0;MQ=50;PV4=0.25,0.34,0.33,1 PL:DP:SP:GT:GQ 32,0,8:4:0:0/1:11 +chr11 57480066 . AG AGGG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 38,0,91:4:0:0/1:41 +chr11 57480300 . T G 9.31 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 57480416 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57502936 . gc gCTTCAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57505472 . G A 8.65 . DP=20;AF1=0.5003;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,29:7:0:0/1:31 +chr11 57507590 . T G 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,0,2;MQ=49;PV4=0.33,0.006,0.21,0.25 PL:DP:SP:GT:GQ 30,0,80:4:5:0/1:33 +chr11 57512662 . CCTAAGTT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57531056 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 57549336 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 57566899 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57590857 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57602677 . T TAG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 57630060 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57637980 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 57642373 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57671820 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 57689839 . a aCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57715576 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 57791174 . t tGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57798723 . A G 75.1 . DP=58;AF1=1;CI95=0.5,1;DP4=0,1,3,7;MQ=49;PV4=1,0.084,0.32,1 PL:DP:SP:GT:GQ 106,5,0:11:0:1/1:46 +chr11 57798942 . A G 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,22,12;MQ=48;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 255,83,0:35:0:1/1:99 +chr11 57812112 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57823262 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57830550 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 57836248 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 57859278 . t tCTATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57870204 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57888678 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 57909435 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57930226 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57934090 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 57940600 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 57956663 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57958208 . G C 46 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=4,5,9,0;MQ=47;PV4=0.029,0.0095,0.1,1 PL:DP:SP:GT:GQ 76,0,196:18:15:0/1:79 +chr11 57958775 . C T 56.5 . DP=52;AF1=0.5718;CI95=0.5,1;DP4=0,1,5,2;MQ=49;PV4=0.37,0.11,0.3,1 PL:DP:SP:GT:GQ 86,0,6:8:0:0/1:8 +chr11 57959741 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 57970918 . C A 36 . DP=8;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,3;MQ=48;PV4=0.4,0.019,0.29,0.24 PL:DP:SP:GT:GQ 66,0,29:5:0:0/1:32 +chr11 57971195 . G A 25 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,3;MQ=49;PV4=1,0.07,0.19,1 PL:DP:SP:GT:GQ 55,0,45:7:0:0/1:48 +chr11 57971201 . G A 22.5 . DP=42;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 55,12,0:4:0:1/1:72 +chr11 57971695 . C A 17.8 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 57971698 . T G 6.36 . DP=11;AF1=0.5262;CI95=0.5,1;DP4=0,1,0,3;MQ=43;PV4=1,1,0.36,0.38 PL:DP:SP:GT:GQ 35,0,10:4:0:0/1:13 +chr11 57971699 . T A 3.55 . DP=11;AF1=0.5008;CI95=0.5,0.5;DP4=0,2,0,3;MQ=46;PV4=1,1,0.17,0.35 PL:DP:SP:GT:GQ 31,0,24:5:0:0/1:26 +chr11 57982171 . A C 5.46 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.36,0.042,1 PL:DP:SP:GT:GQ 34,0,37:6:0:0/1:35 +chr11 57982229 . A G 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=48 PL:DP:SP:GT:GQ 138,24,0:8:0:1/1:96 +chr11 57982584 . T C 3.02 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57982620 . A G 99 . DP=30;AF1=1;CI95=1,1;DP4=1,0,10,18;MQ=45;PV4=0.38,1.4e-06,0.16,0.37 PL:DP:SP:GT:GQ 243,37,0:29:0:1/1:99 +chr11 57982896 . G T 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr11 57983194 . A G 11.4 . DP=10;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,4;MQ=50;PV4=1,0.023,0.34,1 PL:DP:SP:GT:GQ 41,0,16:5:0:0/1:19 +chr11 57995323 . T A 3.54 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.44,0.11,1 PL:DP:SP:GT:GQ 31,0,33:5:0:0/1:32 +chr11 57996312 . C G 42.5 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=45 PL:DP:SP:GT:GQ 75,12,0:4:0:1/1:72 +chr11 57996803 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 58000828 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58024718 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 58025374 . ctgt cTAGtgt 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58033768 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58034543 . C T 55.3 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=48 PL:DP:SP:GT:GQ 88,15,0:5:0:1/1:75 +chr11 58059854 . G T 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,2,0;MQ=49;PV4=0.33,0.085,0.21,1 PL:DP:SP:GT:GQ 30,0,68:4:5:0/1:33 +chr11 58065391 . ctct cTCTtct 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58088558 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58101673 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58111513 . T C 83.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=46 PL:DP:SP:GT:GQ 116,18,0:6:0:1/1:90 +chr11 58112130 . C A 51.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 84,18,0:6:0:1/1:90 +chr11 58125620 . T C 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,18,2;MQ=45 PL:DP:SP:GT:GQ 241,60,0:20:0:1/1:99 +chr11 58174398 . CA CAGGAGGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58176746 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58195363 . gact gACTCact 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58207204 . A G 94.2 . DP=36;AF1=1;CI95=0.5,1;DP4=1,0,4,6;MQ=49;PV4=0.45,0.18,0.19,1 PL:DP:SP:GT:GQ 126,8,0:11:0:1/1:56 +chr11 58211603 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58280994 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 58284244 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 58290912 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 58295748 . tca t 99 . INDEL;DP=23;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=50 PL:DP:SP:GT:GQ 247,57,0:19:0:1/1:99 +chr11 58311702 . T TAGAACCCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58318618 . C G 3.54 . DP=33;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,0.23,1,1 PL:DP:SP:GT:GQ 31,0,41:6:0:0/1:34 +chr11 58318619 . C G 16.5 . DP=33;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,4;MQ=49;PV4=1,0.3,0.27,1 PL:DP:SP:GT:GQ 46,0,7:5:0:0/1:10 +chr11 58320103 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58334883 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 58341248 . A AT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 58343429 . A AAATTCCTGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58347355 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 58371756 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 58379663 . CGTGTGTGTGTGTGTGTGT CGTGTGTGTGTGTGTGT 58.5 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.016,1,1 PL:DP:SP:GT:GQ 96,0,38:4:0:0/1:41 +chr11 58379977 . T TTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58391946 . G A 16.1 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=6,8,5,0;MQ=49;PV4=0.045,0.16,7.7e-11,1 PL:DP:SP:GT:GQ 46,0,246:19:14:0/1:49 +chr11 58443685 . t tACTGTGAATCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58477868 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58478084 . T C 99 . DP=41;AF1=1;CI95=0.5,1;DP4=1,0,3,7;MQ=47;PV4=0.36,0.38,0.065,1 PL:DP:SP:GT:GQ 142,7,0:11:0:1/1:57 +chr11 58489229 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58491921 . A T 99 . DP=29;AF1=1;CI95=1,1;DP4=0,1,5,10;MQ=48;PV4=1,1,0.094,1 PL:DP:SP:GT:GQ 188,30,0:16:0:1/1:99 +chr11 58533882 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58552503 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58561893 . c cAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58565343 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58565354 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 58577207 . AA AACGTGGAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58604712 . T C 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,19,4;MQ=46 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr11 58605834 . C T 13.3 . DP=12;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,0.059,0,1 PL:DP:SP:GT:GQ 43,0,16:4:0:0/1:19 +chr11 58619699 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58647807 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58663597 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 58681248 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 58737320 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58761957 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 58799944 . c cGT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 58817570 . T G 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 58832515 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58867539 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 58869868 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58916421 . T G 4.77 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=0,5,0,3;MQ=48;PV4=1,0.18,0.46,0.43 PL:DP:SP:GT:GQ 33,0,77:8:0:0/1:36 +chr11 58919689 . A C 3.54 . DP=40;AF1=0.4998;CI95=0.5,0.5;DP4=0,27,8,0;MQ=49;PV4=4.2e-08,8e-11,3e-08,1 PL:DP:SP:GT:GQ 31,0,238:35:74:0/1:34 +chr11 58923458 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 58933677 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 58967353 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 58973199 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 58978695 . A C 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,1,0,3;MQ=49;PV4=0.14,0.19,0.015,1 PL:DP:SP:GT:GQ 41,0,119:8:8:0/1:44 +chr11 58997902 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 59015653 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 59025435 . A G 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=43 PL:DP:SP:GT:GQ 168,18,0:6:0:1/1:90 +chr11 59033756 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 59045423 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59055059 . T G 34.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=47 PL:DP:SP:GT:GQ 67,12,0:4:0:1/1:72 +chr11 59098590 . t tTTAGATTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59101342 . AG AGGGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 59109719 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 59132798 . G C 99 . DP=25;AF1=1;CI95=1,1;DP4=1,0,3,16;MQ=44;PV4=0.2,1,1,0.086 PL:DP:SP:GT:GQ 255,20,0:20:0:1/1:80 +chr11 59132882 . A G 10.2 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 59181462 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 59189405 . T C 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=46 PL:DP:SP:GT:GQ 173,51,0:17:0:1/1:99 +chr11 59202914 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 59211188 . G A 15.2 . DP=26;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.036,0.065,1 PL:DP:SP:GT:GQ 45,0,15:4:0:0/1:18 +chr11 59211263 . AC ACCC 64.5 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 102,0,58:9:0:0/1:61 +chr11 59211264 . C CCG 20.5 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 58,0,44:5:0:0/1:47 +chr11 59211271 . A T 17.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,4,4,0;MQ=49;PV4=0.076,0.071,0.06,0.13 PL:DP:SP:GT:GQ 47,0,153:10:11:0/1:50 +chr11 59224720 . A G 99 . DP=54;AF1=1;CI95=0.5,1;DP4=2,0,7,8;MQ=49;PV4=0.47,0.12,0.26,1 PL:DP:SP:GT:GQ 132,5,0:17:3:1/1:46 +chr11 59237349 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 59259831 . T C 12 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 59271637 . T C 19.2 . DP=50;AF1=0.7303;CI95=0.5,1;DP4=0,1,3,0;MQ=49;PV4=0.25,1,0.11,1 PL:DP:SP:GT:GQ 48,0,2:4:0:0/1:3 +chr11 59277726 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59283171 . C G 30 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,3;MQ=45;PV4=1,1,0.033,1 PL:DP:SP:GT:GQ 60,0,109:9:0:0/1:63 +chr11 59304739 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 59305606 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 59326951 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 59345601 . A T 6.2 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,0.19,0.21,0.46 PL:DP:SP:GT:GQ 35,0,76:8:0:0/1:38 +chr11 59345854 . G C 4.13 . DP=25;AF1=0.4998;CI95=0.5,0.5;DP4=0,9,0,4;MQ=49;PV4=1,0.073,0.28,0.15 PL:DP:SP:GT:GQ 32,0,108:13:0:0/1:35 +chr11 59346519 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 59347728 . A C 7.8 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,4;MQ=48;PV4=1,0.44,0.063,1 PL:DP:SP:GT:GQ 37,0,79:12:0:0/1:40 +chr11 59348782 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 59361154 . T G 21 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,5;MQ=48;PV4=0.021,0.0066,1,1 PL:DP:SP:GT:GQ 51,0,194:13:17:0/1:54 +chr11 59361264 . GTG GTGCACACTG 7.36 . INDEL;DP=2;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,22:2:0:0/1:25 +chr11 59405524 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 59448399 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 59494875 . G GTCGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59532735 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59543288 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59559591 . T G 46 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,2,5,0;MQ=48;PV4=0.048,1.6e-06,0.011,1 PL:DP:SP:GT:GQ 76,0,71:7:13:0/1:73 +chr11 59559997 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 59575821 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 59577373 . C A 12.3 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=5,3,0,6;MQ=49;PV4=0.031,0.0011,0.13,1 PL:DP:SP:GT:GQ 42,0,219:14:15:0/1:45 +chr11 59586639 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 59588298 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 59591045 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 59599374 . t tGGAGTGTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59625110 . t tGGGTGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 59626571 . A C 47 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=2,13,9,0;MQ=48;PV4=4.2e-05,0.00075,1.2e-05,0.37 PL:DP:SP:GT:GQ 77,0,255:24:44:0/1:80 +chr11 59645389 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 59690279 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 59735313 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59743548 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59778387 . C CTCT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 59795665 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59813497 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59814623 . A G 16.1 . DP=10;AF1=0.5008;CI95=0.5,0.5;DP4=0,2,0,4;MQ=48;PV4=1,0.21,0.12,1 PL:DP:SP:GT:GQ 46,0,25:6:0:0/1:28 +chr11 59824895 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59828576 . A C 6.98 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=5,0,3,0;MQ=47;PV4=1,0.23,0.029,0.41 PL:DP:SP:GT:GQ 36,0,76:8:0:0/1:39 +chr11 59828581 . G T 26 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=3,0,4,0;MQ=47;PV4=1,1,0.062,0.01 PL:DP:SP:GT:GQ 56,0,36:7:0:0/1:39 +chr11 59830103 . A G 99 . DP=48;AF1=1;CI95=1,1;DP4=0,0,2,38;MQ=49 PL:DP:SP:GT:GQ 155,120,0:40:0:1/1:99 +chr11 59837721 . TTA TTATGAAAATA 13.7 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,10,0,2;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 51,0,255:14:0:0/1:54 +chr11 59856263 . G C 7.25 . DP=11;AF1=0.543;CI95=0.5,1;DP4=1,0,0,4;MQ=49;PV4=0.2,0.26,0.3,1 PL:DP:SP:GT:GQ 36,0,8:5:0:0/1:11 +chr11 59858036 . C G 35 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=48;PV4=1,0.034,0.16,1 PL:DP:SP:GT:GQ 65,0,66:6:0:0/1:65 +chr11 59880343 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 59917408 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 59945564 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59947252 . C T 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=9,0,14,1;MQ=47;PV4=1,7.6e-06,0.00013,1 PL:DP:SP:GT:GQ 155,0,180:24:0:0/1:99 +chr11 59947635 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59952176 . C CTGCGCACCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59954254 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59960341 . aga aGACGAGATGCTga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59989053 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59992686 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 59997335 . T C 22 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 60020176 . TGAACA T 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60035232 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 60054806 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 60059509 . CCCACC CCCACCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60073702 . A T 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=47 PL:DP:SP:GT:GQ 141,36,0:12:0:1/1:99 +chr11 60075614 . C T 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=2,3,0,4;MQ=48;PV4=0.44,0.13,0.25,0.41 PL:DP:SP:GT:GQ 32,0,110:9:4:0/1:35 +chr11 60102366 . A C 13.2 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=2,1,3,0;MQ=49;PV4=1,1,0.013,1 PL:DP:SP:GT:GQ 43,0,40:6:0:0/1:41 +chr11 60152563 . T A 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,13,4;MQ=47 PL:DP:SP:GT:GQ 194,51,0:17:0:1/1:99 +chr11 60152584 . G A 52 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=8,9,3,6;MQ=49;PV4=0.68,2.6e-11,0.00067,1 PL:DP:SP:GT:GQ 82,0,255:26:2:0/1:85 +chr11 60152681 . T C 20 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,0,1,5;MQ=49;PV4=0.048,0.0032,0.058,1 PL:DP:SP:GT:GQ 50,0,109:10:13:0/1:53 +chr11 60157107 . T G 54.2 . DP=18;AF1=1;CI95=0.5,1;DP4=0,1,0,14;MQ=49;PV4=1,0.026,1,0.43 PL:DP:SP:GT:GQ 87,16,0:15:0:1/1:80 +chr11 60164204 . G A 4.78 . DP=11;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,1,1;MQ=48;PV4=1,0,0.26,1 PL:DP:SP:GT:GQ 33,0,20:3:0:0/1:23 +chr11 60165352 . ATT A 99 . INDEL;DP=36;AF1=1;CI95=1,1;DP4=1,0,13,17;MQ=50;PV4=0.45,1,0.43,1 PL:DP:SP:GT:GQ 255,65,0:31:0:1/1:99 +chr11 60208749 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 60222555 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60224978 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 60231733 . C CAGA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,0.31,1,0.097 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 60233614 . T C 35 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=8,14,12,0;MQ=48;PV4=0.00024,9.3e-05,0.014,0.49 PL:DP:SP:GT:GQ 65,0,255:34:36:0/1:68 +chr11 60236038 . A G 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 60236513 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 60255478 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 60264755 . G A 95 . DP=24;AF1=1;CI95=1,1;DP4=0,0,19,0;MQ=49 PL:DP:SP:GT:GQ 128,57,0:19:0:1/1:99 +chr11 60264947 . C T 99 . DP=52;AF1=1;CI95=1,1;DP4=0,0,16,24;MQ=45 PL:DP:SP:GT:GQ 255,120,0:40:0:1/1:99 +chr11 60265002 . C T 55 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=8,11,13,5;MQ=50;PV4=0.099,4.1e-20,0.12,1 PL:DP:SP:GT:GQ 85,0,255:37:10:0/1:88 +chr11 60265164 . G A 88.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=45 PL:DP:SP:GT:GQ 121,18,0:6:0:1/1:90 +chr11 60268679 . G C 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,5,26;MQ=49 PL:DP:SP:GT:GQ 213,93,0:31:0:1/1:99 +chr11 60268736 . C A 75 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 108,24,0:8:0:1/1:96 +chr11 60274640 . T C 31.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 64,12,0:4:0:1/1:72 +chr11 60282773 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60285575 . A G 99 . DP=27;AF1=1;CI95=0.5,1;DP4=1,1,14,6;MQ=47;PV4=1,0.33,0.15,1 PL:DP:SP:GT:GQ 185,14,0:22:0:1/1:70 +chr11 60289988 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 60291413 . C T 7.8 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,6,3,1;MQ=50;PV4=0.56,1.1e-05,0.0063,1 PL:DP:SP:GT:GQ 37,0,255:14:3:0/1:40 +chr11 60309853 . T C 6.98 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr11 60309947 . A T 30.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 63,12,0:4:0:1/1:72 +chr11 60326626 . AAT AATGAGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60387532 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60404843 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 60440931 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 60443238 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60463160 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 60467096 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 60472758 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60474882 . CA CAA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 60478147 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 60481149 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60538706 . G A 10.4 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,0.026,0.23,0.13 PL:DP:SP:GT:GQ 40,0,104:8:0:0/1:43 +chr11 60538716 . G C 3.54 . DP=9;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.00031,0.0062,1 PL:DP:SP:GT:GQ 31,0,78:5:0:0/1:34 +chr11 60540877 . C G 5.46 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=7,2,0,3;MQ=48;PV4=0.045,0.098,0.039,0.26 PL:DP:SP:GT:GQ 34,0,201:12:13:0/1:37 +chr11 60552650 . T A 5.46 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,32:2:0:0/1:33 +chr11 60557981 . AG AGCGCGG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,1,1,0.41 PL:DP:SP:GT:GQ 38,0,98:4:0:0/1:41 +chr11 60559805 . A G 83 . DP=41;AF1=1;CI95=1,1;DP4=1,1,4,29;MQ=49;PV4=0.27,0.00046,0.31,1 PL:DP:SP:GT:GQ 116,46,0:35:6:1/1:99 +chr11 60560478 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60561613 . C T 72 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=2,22,1,13;MQ=49;PV4=1,5.3e-10,0.0003,1 PL:DP:SP:GT:GQ 102,0,255:38:0:0/1:99 +chr11 60563787 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60566136 . TA T 17.3 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 60567275 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 60567525 . CCTGGG C 7.35 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,5;MQ=50;PV4=1,0.00049,1,1 PL:DP:SP:GT:GQ 44,0,213:15:0:0/1:47 +chr11 60586105 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 60609687 . GG GGACG 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.29 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr11 60617646 . T C 85.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=48 PL:DP:SP:GT:GQ 118,18,0:6:0:1/1:90 +chr11 60623453 . A ATGAT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60635091 . T C 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 60638461 . C T 54 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49 PL:DP:SP:GT:GQ 87,24,0:8:0:1/1:96 +chr11 60638470 . A G 24.2 . DP=21;AF1=0.7303;CI95=0.5,1;DP4=0,1,0,5;MQ=48;PV4=1,0.44,0.3,1 PL:DP:SP:GT:GQ 53,0,2:6:0:0/1:3 +chr11 60665270 . G C 4.79 . DP=5;AF1=0.5039;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0.17,1,0.17 PL:DP:SP:GT:GQ 33,0,18:3:0:0/1:21 +chr11 60669829 . A C 16.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,1,0.062,1 PL:DP:SP:GT:GQ 46,0,47:6:0:0/1:46 +chr11 60670444 . A C 4.13 . DP=9;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 60676820 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 60690759 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 60696110 . GGCGCC GGCGCCGCGCC 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=49;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 41,0,56:3:0:0/1:44 +chr11 60705454 . A G,C 75.1 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,3,4;MQ=47 PL:DP:SP:GT:GQ 108,18,104,0,6,104:7:0:1/1:90 +chr11 60711016 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 60719532 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 60742231 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60750004 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 60750347 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60750553 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60760427 . A AGGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60773131 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 60774970 . g gTTATC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60776334 . A G 28 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 +chr11 60781375 . G A 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0.33,0.0049,1 PL:DP:SP:GT:GQ 31,0,108:4:0:0/1:34 +chr11 60781400 . T A 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=5,3,3,0;MQ=49;PV4=0.49,0.046,0.0002,1 PL:DP:SP:GT:GQ 33,0,223:11:3:0/1:36 +chr11 60783135 . A G 99 . DP=42;AF1=1;CI95=1,1;DP4=1,1,32,3;MQ=49;PV4=0.21,0.013,0.29,1 PL:DP:SP:GT:GQ 146,51,0:37:7:1/1:99 +chr11 60789835 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 60791351 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 60793111 . t tCA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 60834669 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 60859418 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 60871033 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60882177 . agg aGGAGCAGgg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60891310 . T C 14.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr11 60892606 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,1,2,26;MQ=46;PV4=1,1,0.094,1 PL:DP:SP:GT:GQ 224,60,0:29:0:1/1:99 +chr11 60893235 . C T 24.1 . DP=34;AF1=0.5102;CI95=0.5,0.5;DP4=1,1,2,3;MQ=50;PV4=1,0.43,0.29,1 PL:DP:SP:GT:GQ 54,0,14:7:0:0/1:17 +chr11 60906224 . G A 14.2 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=16,11,10,0;MQ=49;PV4=0.018,0.0061,0.0015,1 PL:DP:SP:GT:GQ 44,0,255:37:17:0/1:47 +chr11 61015883 . T G 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=46;PV4=1,0.079,0.0076,1 PL:DP:SP:GT:GQ 32,0,75:4:0:0/1:35 +chr11 61044381 . A T 4.39 . DP=2;AF1=0.5553;CI95=0.5,1;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,7:2:0:0/1:10 +chr11 61055734 . T G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61065907 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61079617 . GCA G 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 61087981 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61089013 . A ACAC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.16 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 61108974 . G A 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr11 61110169 . A C 78.2 . DP=53;AF1=1;CI95=0.5,1;DP4=0,1,2,7;MQ=49;PV4=1,1,0.26,1 PL:DP:SP:GT:GQ 111,16,0:10:0:1/1:80 +chr11 61117807 . C A 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=1,1,2,0;MQ=49;PV4=1,0.1,1,0.3 PL:DP:SP:GT:GQ 30,0,70:4:0:0/1:33 +chr11 61120844 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61121223 . G T 11.3 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,1,1,0.3 PL:DP:SP:GT:GQ 41,0,41:6:0:0/1:41 +chr11 61123661 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61123965 . A G 25 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 61179285 . G A 53.1 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=49 PL:DP:SP:GT:GQ 86,18,0:6:0:1/1:90 +chr11 61189043 . T C 27 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=4,26,7,1;MQ=49;PV4=0.00019,0.0074,5.2e-06,0.15 PL:DP:SP:GT:GQ 57,0,255:38:37:0/1:60 +chr11 61197592 . A C 30 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=49;PV4=1,1,0.0053,1 PL:DP:SP:GT:GQ 60,0,84:13:0:0/1:63 +chr11 61223542 . T TGCGGCGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61224249 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 61243844 . t tTAA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 61252138 . A G 7.05 . DP=5;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,2,0;MQ=48;PV4=0.33,1,0.11,1 PL:DP:SP:GT:GQ 36,0,14:3:0:0/1:17 +chr11 61252175 . T G 26 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,4;MQ=48;PV4=0.33,0.097,0.17,1 PL:DP:SP:GT:GQ 56,0,55:6:0:0/1:55 +chr11 61253973 . A G 83 . DP=13;AF1=1;CI95=1,1;DP4=0,0,8,1;MQ=49 PL:DP:SP:GT:GQ 116,27,0:9:0:1/1:99 +chr11 61280720 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 61311040 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61314516 . T A 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,39:2:0:0/1:34 +chr11 61314836 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61319000 . C G 18.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 61321931 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 61323541 . G GCC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 61363773 . T G 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 61374504 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61378717 . C CTCCGTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61379375 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61404211 . A G 15.1 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=45;PV4=0.33,0.094,0.29,1 PL:DP:SP:GT:GQ 45,0,41:3:0:0/1:43 +chr11 61404698 . TT TTGT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,37:2:0:0/1:39 +chr11 61418635 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61472619 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61487592 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61490772 . G T 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 61496429 . G C 5.46 . DP=46;AF1=0.4999;CI95=0.5,0.5;DP4=10,15,5,0;MQ=49;PV4=0.042,0.039,7.3e-10,1 PL:DP:SP:GT:GQ 34,0,255:30:14:0/1:37 +chr11 61503697 . TGGG TGCGGG 7.36 . INDEL;DP=13;AF1=0.501;CI95=0.5,0.5;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,24:2:0:0/1:27 +chr11 61508191 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 61519933 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 61524111 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 61530743 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61548378 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 61548559 . A G 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,11,7;MQ=49 PL:DP:SP:GT:GQ 197,54,0:18:0:1/1:99 +chr11 61549025 . G A 79.2 . DP=13;AF1=1;CI95=0.5,1;DP4=0,1,9,1;MQ=48;PV4=0.18,1,1,1 PL:DP:SP:GT:GQ 112,17,0:11:0:1/1:85 +chr11 61551356 . T C 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,7,3;MQ=43 PL:DP:SP:GT:GQ 255,30,0:10:0:1/1:99 +chr11 61553669 . C A 12.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.35,0.35,0.08 PL:DP:SP:GT:GQ 42,0,50:6:0:0/1:44 +chr11 61560081 . G A 11.6 . DP=35;AF1=0.543;CI95=0.5,1;DP4=0,1,1,3;MQ=50;PV4=1,0.031,1,1 PL:DP:SP:GT:GQ 41,0,8:5:0:0/1:11 +chr11 61562288 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61571348 . C G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61593772 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 61596093 . CC CCGAGC,CCGTCTTC 9.94 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 91,47,47,44,0,44:2:0:1/1:41 +chr11 61600459 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61602701 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 61615803 . C G 37 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=6,8,1,7;MQ=48;PV4=0.19,1.4e-06,0.071,1 PL:DP:SP:GT:GQ 67,0,255:22:7:0/1:70 +chr11 61617147 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61617163 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 61624414 . T C 30 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=48;PV4=1,0.037,2.7e-09,1 PL:DP:SP:GT:GQ 60,0,158:9:0:0/1:63 +chr11 61629807 . G GGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61644287 . C G 5.29 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 61645798 . A ATCG 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,0.44,1,0.33 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 61666748 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61666895 . C G 3.01 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.19,0.21,1 PL:DP:SP:GT:GQ 30,0,49:4:0:0/1:33 +chr11 61674913 . G C 4.13 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=3,3,3,0;MQ=48;PV4=0.46,0.085,0.046,1 PL:DP:SP:GT:GQ 32,0,161:9:3:0/1:35 +chr11 61681320 . A ATACAAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61725599 . ATCCTCC ATCCTCCGCCTCCTCC 5.08 . INDEL;DP=35;AF1=0.5;CI95=0.5,0.5;DP4=7,4,3,1;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,176:15:0:0/1:44 +chr11 61725608 . CTCCTCC CTCCTCCTCTTCCTCC 13.7 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=5,12,3,1;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 51,0,231:21:6:0/1:54 +chr11 61725613 . CC CCTC 13.7 . INDEL;DP=44;AF1=0.5;CI95=0.5,0.5;DP4=10,15,3,1;MQ=50;PV4=0.3,1,1,0.36 PL:DP:SP:GT:GQ 51,0,255:29:5:0/1:54 +chr11 61732811 . AGTATGAC AGTATGACGTATGAC 99 . INDEL;DP=58;AF1=0.5004;CI95=0.5,0.5;DP4=7,0,30,6;MQ=50;PV4=0.57,1,1,1 PL:DP:SP:GT:GQ 255,0,28:43:2:0/1:31 +chr11 61732817 . AC ACGTATGTC 99 . INDEL;DP=61;AF1=0.5;CI95=0.5,0.5;DP4=13,3,22,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 255,0,177:43:0:0/1:99 +chr11 61744744 . TGCGGAGGGC TGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61768740 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 61773440 . T TGGCTTGTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61813932 . G C 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 61829465 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61859028 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61895741 . A G 49.6 . DP=29;AF1=0.5939;CI95=0.5,1;DP4=0,1,2,4;MQ=49;PV4=1,0.099,0.17,1 PL:DP:SP:GT:GQ 79,0,5:7:0:0/1:7 +chr11 61906299 . A G 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=46 PL:DP:SP:GT:GQ 156,24,0:8:0:1/1:96 +chr11 61906374 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,9,10;MQ=43 PL:DP:SP:GT:GQ 255,57,0:19:0:1/1:99 +chr11 61907631 . T A 20 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 61914617 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 61916128 . A C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61916299 . A G 3.01 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,0.0017,1,1 PL:DP:SP:GT:GQ 30,0,57:4:0:0/1:33 +chr11 61916337 . T A 41 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=48;PV4=1,0.32,0.00097,0.48 PL:DP:SP:GT:GQ 71,0,88:10:0:0/1:74 +chr11 61960763 . TC TCC 99 . INDEL;DP=10;AF1=0.7303;CI95=0.5,1;DP4=1,0,8,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 152,0,2:9:0:0/1:3 +chr11 61963024 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 61963879 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61967109 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61973243 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62009464 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 62016793 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62021872 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62033529 . a aCATAAAGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=47 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 62074693 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62078884 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62087406 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 62096198 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62098407 . G A 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=3,3,5,0;MQ=19;PV4=0.18,0.00052,0.15,1 PL:DP:SP:GT:GQ 33,0,76:11:7:0/1:36 +chr11 62098726 . C T 55 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,7,1,8;MQ=47;PV4=1,7.8e-08,1,1 PL:DP:SP:GT:GQ 85,0,210:17:0:0/1:88 +chr11 62124743 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62139872 . C A 7.59 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 62154710 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 62173681 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 62190448 . C G 25 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 62199317 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62258167 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 62273469 . ga gAACTGCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 62285338 . C G 29 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=5,2,0,6;MQ=49;PV4=0.021,0.093,0.044,1 PL:DP:SP:GT:GQ 59,0,140:13:17:0/1:62 +chr11 62292882 . G T 23.3 . DP=28;AF1=0.5336;CI95=0.5,1;DP4=1,0,1,3;MQ=49;PV4=0.4,0.099,0.25,1 PL:DP:SP:GT:GQ 53,0,9:5:0:0/1:12 +chr11 62293948 . G A 16.1 . DP=81;AF1=0.5;CI95=0.5,0.5;DP4=30,23,9,14;MQ=23;PV4=0.21,3.6e-26,0.043,1 PL:DP:SP:GT:GQ 46,0,236:76:7:0/1:49 +chr11 62294088 . GAGAA GAGAAGAA 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 62311881 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62319638 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62334521 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62344879 . TC TCGCCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 62365665 . G A 28 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=48 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 +chr11 62370296 . CG CGTG 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.42 PL:DP:SP:GT:GQ 41,0,49:3:0:0/1:43 +chr11 62371110 . CT CTCAAT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr11 62376953 . CAGAGA CAGAGAGA 5.08 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,8,1,1;MQ=50;PV4=0.35,1,1,0.002 PL:DP:SP:GT:GQ 41,0,182:11:5:0/1:44 +chr11 62379578 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 62384118 . C T 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,1;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 31,0,82:4:0:0/1:34 +chr11 62384869 . T C 4.88 . DP=29;AF1=0.5206;CI95=0.5,1;DP4=0,1,1,2;MQ=50;PV4=1,0.064,1,1 PL:DP:SP:GT:GQ 33,0,11:4:0:0/1:14 +chr11 62394866 . T G 58.3 . DP=25;AF1=0.5336;CI95=0.5,1;DP4=0,2,0,8;MQ=48;PV4=1,1,0.018,0.2 PL:DP:SP:GT:GQ 88,0,9:10:0:0/1:12 +chr11 62401716 . A G 18 . DP=21;AF1=0.6671;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,0.21,0.35,0.2 PL:DP:SP:GT:GQ 47,0,3:6:0:0/1:5 +chr11 62416069 . G A 4.77 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.096,0.16,1 PL:DP:SP:GT:GQ 33,0,68:4:0:0/1:36 +chr11 62430659 . T A 4.61 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 62483436 . A T 10.4 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.17,0.18,1 PL:DP:SP:GT:GQ 40,0,87:7:0:0/1:43 +chr11 62489924 . C G 6.98 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.34,0.04,1 PL:DP:SP:GT:GQ 36,0,76:10:0:0/1:39 +chr11 62489929 . T G 20.7 . DP=15;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,4;MQ=47;PV4=1,1,0.23,0.42 PL:DP:SP:GT:GQ 50,0,5:5:0:0/1:7 +chr11 62490219 . G A 21 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,11,1,4;MQ=49;PV4=0.31,0.0067,0.0044,1 PL:DP:SP:GT:GQ 51,0,201:16:0:0/1:54 +chr11 62494231 . TCCGCCG TCCG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 62494630 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 62496519 . T C 8.64 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=3,10,3,3;MQ=50;PV4=0.32,1.1e-06,1,1 PL:DP:SP:GT:GQ 38,0,255:19:5:0/1:41 +chr11 62520842 . CA CACTCTTCACCTA 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 62524868 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62560244 . A C 14.2 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,5;MQ=49;PV4=1,0.028,0.24,0.14 PL:DP:SP:GT:GQ 44,0,42:8:0:0/1:43 +chr11 62563353 . G A 18.8 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 62593085 . C G 3.55 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 62603213 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 62628503 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62644968 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 62647240 . T TCC 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 62650561 . C CTCTCCTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 62652063 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=1,0,16,11;MQ=46;PV4=1,1,0.025,1 PL:DP:SP:GT:GQ 255,58,0:28:0:1/1:99 +chr11 62652779 . C T 11.3 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr11 62655685 . G C 14.2 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,3;MQ=49;PV4=0.17,0.0011,0.00087,0.43 PL:DP:SP:GT:GQ 44,0,210:9:8:0/1:47 +chr11 62702506 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62718370 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 62722783 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 62744075 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62747145 . A G 41.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 62748772 . ATCC ATCCTCC 3.8 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,2;MQ=50;PV4=1,1,1,0.0081 PL:DP:SP:GT:GQ 39,0,113:8:0:0/1:42 +chr11 62748773 . TCC TCCCCC 8.18 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,2;MQ=50;PV4=1,1,1,0.061 PL:DP:SP:GT:GQ 45,0,128:9:0:0/1:48 +chr11 62766431 . A T 99 . DP=36;AF1=1;CI95=1,1;DP4=0,1,14,12;MQ=47;PV4=0.48,0.0027,0.2,1 PL:DP:SP:GT:GQ 248,31,0:27:0:1/1:99 +chr11 62767551 . AG AGGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 62799277 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 62799988 . G T 10.4 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,1,0.0046,0.46 PL:DP:SP:GT:GQ 40,0,76:9:0:0/1:43 +chr11 62800515 . G T 14.2 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,3;MQ=49;PV4=0.4,0.00042,0.079,0.48 PL:DP:SP:GT:GQ 44,0,124:6:4:0/1:47 +chr11 62814965 . G A 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 62815333 . A T 3.54 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,30:2:0:0/1:30 +chr11 62815381 . A G 99 . DP=15;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,5,6;MQ=48;PV4=0.46,0.075,0.095,0.46 PL:DP:SP:GT:GQ 142,0,19:13:3:0/1:22 +chr11 62815510 . G C 56.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:DP:SP:GT:GQ 89,12,0:4:0:1/1:72 +chr11 62848588 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 62866590 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 62883435 . G A 20 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=41 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 62910891 . C A 12.3 . DP=14;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,1,2;MQ=48;PV4=1,0.15,1,0.021 PL:DP:SP:GT:GQ 42,0,16:4:0:0/1:19 +chr11 62928919 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 62931484 . T C 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,5,9;MQ=45 PL:DP:SP:GT:GQ 255,42,0:14:0:1/1:99 +chr11 62933565 . G C 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,7,4;MQ=44 PL:DP:SP:GT:GQ 244,33,0:11:0:1/1:99 +chr11 62943944 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 62944810 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62946900 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 62951041 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,11,1;MQ=44 PL:DP:SP:GT:GQ 200,36,0:12:0:1/1:99 +chr11 62951064 . C A 91 . DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=46 PL:DP:SP:GT:GQ 124,48,0:16:0:1/1:99 +chr11 62951312 . G C 57.5 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=45 PL:DP:SP:GT:GQ 90,12,0:4:0:1/1:72 +chr11 62951837 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62984697 . T C 50 . DP=6;AF1=0.502;CI95=0.5,0.5;DP4=1,0,5,0;MQ=46;PV4=1,0.064,1,0.062 PL:DP:SP:GT:GQ 80,0,21:6:0:0/1:24 +chr11 62996682 . G C 47.2 . DP=22;AF1=0.5263;CI95=0.5,1;DP4=1,0,5,0;MQ=46;PV4=1,0.34,0.14,1 PL:DP:SP:GT:GQ 77,0,10:6:0:0/1:13 +chr11 62996836 . T C 25.2 . DP=28;AF1=0.5207;CI95=0.5,1;DP4=1,0,2,2;MQ=49;PV4=1,0.12,0.29,1 PL:DP:SP:GT:GQ 55,0,11:5:0:0/1:14 +chr11 63011157 . G T 22 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 63011204 . A C 29 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=48 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr11 63035380 . c cTTCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63044020 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63058063 . C G 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,1,23;MQ=49 PL:DP:SP:GT:GQ 135,72,0:24:0:1/1:99 +chr11 63064823 . T C 33.5 . DP=42;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 63064970 . T G 67.5 . DP=41;AF1=0.9998;CI95=0.5,1;DP4=1,0,1,7;MQ=48;PV4=0.22,0.3,0.2,1 PL:DP:SP:GT:GQ 97,2,0:9:0:1/1:37 +chr11 63065156 . G A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,13,24;MQ=48;PV4=0.37,0.36,0.23,1 PL:DP:SP:GT:GQ 255,87,0:38:0:1/1:99 +chr11 63066903 . T C 19.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 63067138 . T G 23 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr11 63071683 . T C 7.8 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=4,9,0,6;MQ=48;PV4=0.26,0.037,0.018,1 PL:DP:SP:GT:GQ 37,0,218:19:6:0/1:40 +chr11 63072310 . C T 41.5 . DP=59;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 63078522 . A G 4.21 . DP=8;AF1=0.5161;CI95=0.5,0.5;DP4=0,1,2,0;MQ=49;PV4=0.33,1,0.33,1 PL:DP:SP:GT:GQ 32,0,12:3:0:0/1:15 +chr11 63078625 . A ATGCACG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63095493 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 63109381 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63121123 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 63130034 . A G 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=48 PL:DP:SP:GT:GQ 146,51,0:17:0:1/1:99 +chr11 63137935 . G C 99 . DP=45;AF1=1;CI95=1,1;DP4=1,0,8,31;MQ=48;PV4=0.22,0.26,0.22,1 PL:DP:SP:GT:GQ 228,95,0:40:0:1/1:99 +chr11 63137996 . T C 51.3 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=45 PL:DP:SP:GT:GQ 84,15,0:5:0:1/1:75 +chr11 63141287 . G A 31.1 . DP=37;AF1=0.5129;CI95=0.5,0.5;DP4=0,1,1,3;MQ=48;PV4=1,0.24,0.16,1 PL:DP:SP:GT:GQ 61,0,13:5:0:0/1:16 +chr11 63146448 . C G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63174890 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 63176367 . G A 33.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 63177242 . ATTTTTT ATTTTTTT 11.3 . INDEL;DP=14;AF1=1;CI95=0.5,1;DP4=1,0,6,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 49,4,0:7:0:1/1:45 +chr11 63185132 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 63233708 . CAA CA 19.5 . INDEL;DP=49;AF1=0.5;CI95=0.5,0.5;DP4=2,2,1,2;MQ=50;PV4=1,1,1,0.1 PL:DP:SP:GT:GQ 57,0,78:7:0:0/1:60 +chr11 63233710 . A G 3.01 . DP=46;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,2,1;MQ=50;PV4=1,0.073,0.19,1 PL:DP:SP:GT:GQ 30,0,53:6:0:0/1:33 +chr11 63236052 . C G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,37:2:0:0/1:32 +chr11 63258338 . A T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63258416 . T C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63313644 . T C 21.5 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 54,12,0:4:0:1/1:72 +chr11 63314680 . T TCTCCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63326209 . G A 20 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,5;MQ=49;PV4=1,0.084,0.064,1 PL:DP:SP:GT:GQ 50,0,151:16:0:0/1:53 +chr11 63328600 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 63357919 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=46 PL:DP:SP:GT:GQ 154,54,0:18:0:1/1:99 +chr11 63369784 . g gTT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 63381099 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63384138 . t tCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63388596 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63405015 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 63413962 . aaaataaata aaaata 85.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 125,9,0:3:0:1/1:63 +chr11 63413968 . aatat a 20.5 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 58,0,43:4:0:0/1:46 +chr11 63458428 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63487433 . G T 4.77 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=3,6,2,3;MQ=48;PV4=1,0.3,0.17,0.4 PL:DP:SP:GT:GQ 33,0,167:14:0:0/1:36 +chr11 63487435 . A C 20 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=9,4,0,6;MQ=48;PV4=0.011,0.0037,0.35,1 PL:DP:SP:GT:GQ 50,0,255:19:20:0/1:53 +chr11 63488005 . A C 10.4 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=49;PV4=1,0.14,0.037,0.17 PL:DP:SP:GT:GQ 40,0,96:7:0:0/1:43 +chr11 63489980 . c cTCCTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63495318 . a aGACAGTCTCT 10.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 63500223 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63528425 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 63543691 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63545882 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63610847 . C CTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63656487 . TC TCAGCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63662348 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 63664634 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 63666536 . G C 85 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=3,19,15,0;MQ=49;PV4=8.7e-08,0.00067,6.7e-07,0.19 PL:DP:SP:GT:GQ 115,0,255:37:71:0/1:99 +chr11 63668287 . C T 8.64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,4,1,1;MQ=48;PV4=0.33,0.011,0,0.2 PL:DP:SP:GT:GQ 38,0,135:6:0:0/1:41 +chr11 63668556 . C CTA 7.62 . INDEL;DP=19;AF1=0.543;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 63668557 . C T 29.5 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 62,12,0:4:0:1/1:72 +chr11 63680297 . A G 16.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr11 63681421 . C T 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,1;MQ=49;PV4=1,0.015,0.21,0.19 PL:DP:SP:GT:GQ 32,0,80:4:0:0/1:35 +chr11 63681513 . T C 17.8 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 63695894 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63702844 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 63714564 . T TGGTTGCGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 63729785 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 63734346 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63764764 . C A 6.2 . DP=4;AF1=0.5009;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.22,0.077,1 PL:DP:SP:GT:GQ 35,0,24:3:0:0/1:27 +chr11 63765035 . C G 3.01 . DP=17;AF1=0.4997;CI95=0.5,0.5;DP4=1,2,0,2;MQ=46;PV4=1,0.26,0.11,1 PL:DP:SP:GT:GQ 30,0,75:5:0:0/1:33 +chr11 63766448 . G T 3.55 . DP=4;AF1=0.5018;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,21:2:0:0/1:24 +chr11 63796955 . CC CCCTGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63813695 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 63838627 . t tGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63839669 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 63841166 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 63853279 . g gACGTGAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63855132 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63859124 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 63860658 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63872245 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63883985 . T C 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=6,14,8,9;MQ=48;PV4=0.33,1.5e-15,1.8e-06,0.18 PL:DP:SP:GT:GQ 182,0,255:37:5:0/1:99 +chr11 63884611 . C A 4.13 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,0,2;MQ=49;PV4=0.33,0.13,0.092,1 PL:DP:SP:GT:GQ 32,0,64:4:5:0/1:35 +chr11 63885034 . C CACCA 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 63885588 . C G 26 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,1,4,0;MQ=48;PV4=0.43,1,0.23,0.37 PL:DP:SP:GT:GQ 56,0,42:7:0:0/1:45 +chr11 63885632 . A G 7.15 . DP=35;AF1=0.5263;CI95=0.5,1;DP4=1,0,4,0;MQ=49;PV4=1,0.046,0.34,1 PL:DP:SP:GT:GQ 36,0,10:5:0:0/1:13 +chr11 63885704 . C T 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=2,9,0,23;MQ=46;PV4=0.098,2.5e-06,4.8e-09,1 PL:DP:SP:GT:GQ 172,0,236:34:10:0/1:99 +chr11 63961574 . T A 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 63961850 . T G 13.2 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,4;MQ=49;PV4=0.49,0.035,0.065,0.39 PL:DP:SP:GT:GQ 43,0,176:11:3:0/1:46 +chr11 63962152 . T C 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,12;MQ=47;PV4=1,4.9e-05,6.9e-05,1 PL:DP:SP:GT:GQ 130,0,214:24:0:0/1:99 +chr11 63976670 . C T 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,43:2:0:0/1:36 +chr11 63978150 . C A 17.3 . DP=9;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.17,0.072 PL:DP:SP:GT:GQ 47,0,10:4:0:0/1:13 +chr11 63978202 . GG GGTTTG 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 63980341 . c cTGT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 63990941 . A C 11.4 . DP=8;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.28,0.24,0.36 PL:DP:SP:GT:GQ 41,0,13:4:0:0/1:16 +chr11 63990996 . ACCC ACC 52.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,5;MQ=50;PV4=1,3.4e-05,1,0.031 PL:DP:SP:GT:GQ 90,0,40:7:0:0/1:43 +chr11 63991801 . T C 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,6,1,13;MQ=46;PV4=1,0.13,1.5e-06,1 PL:DP:SP:GT:GQ 224,0,177:21:0:0/1:99 +chr11 63993370 . G A 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0,0,0.2 PL:DP:SP:GT:GQ 34,0,83:3:0:0/1:37 +chr11 63997338 . T C 50.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=46 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 +chr11 64000410 . C G 19.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,6;MQ=49;PV4=1,0.002,0.0074,1 PL:DP:SP:GT:GQ 49,0,192:17:0:0/1:52 +chr11 64004624 . CTTGTTTGT CTTGT 99 . INDEL;DP=16;AF1=1;CI95=0.5,1;DP4=1,0,11,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 227,16,0:12:0:1/1:80 +chr11 64004944 . TC TCCC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.077 PL:DP:SP:GT:GQ 41,0,82:3:0:0/1:44 +chr11 64006070 . GCA G 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 64010631 . TG TGAG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,82:3:0:0/1:44 +chr11 64011441 . T C 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,5,14;MQ=48 PL:DP:SP:GT:GQ 216,57,0:19:0:1/1:99 +chr11 64013716 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64022459 . A G 47.1 . DP=22;AF1=0.5102;CI95=0.5,0.5;DP4=0,1,4,1;MQ=46;PV4=0.33,0.14,0.21,1 PL:DP:SP:GT:GQ 77,0,14:6:0:0/1:17 +chr11 64024048 . G C 7.8 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,0;MQ=48;PV4=1,0.037,0.072,1 PL:DP:SP:GT:GQ 37,0,79:4:0:0/1:40 +chr11 64031434 . CG CGCAG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 64031840 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64039066 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 64056752 . C T 3.01 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,1,0.22,0.43 PL:DP:SP:GT:GQ 30,0,42:7:0:0/1:33 +chr11 64062354 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64064935 . GCAGAA GCAGAATCAGAA 5.11 . INDEL;DP=22;AF1=0.505;CI95=0.5,0.5;DP4=2,0,1,0;MQ=49;PV4=1,1,1,0.41 PL:DP:SP:GT:GQ 41,0,17:3:0:0/1:20 +chr11 64081736 . T C,A 6.98 . DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 49,16,36,13,0,36:2:0:1/1:41 +chr11 64082807 . C T 99 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=46;PV4=1,0.0014,2.4e-07,1 PL:DP:SP:GT:GQ 132,0,167:12:0:0/1:99 +chr11 64084325 . T G 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.1,0.058,0.0041 PL:DP:SP:GT:GQ 41,0,68:6:0:0/1:44 +chr11 64085074 . T A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64088069 . T C 5.29 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 64088435 . A G 14.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr11 64088612 . T A 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 64100502 . a aGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64111669 . T G 9.52 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=9,3,0,4;MQ=49;PV4=0.019,0.00071,8.3e-05,1 PL:DP:SP:GT:GQ 39,0,255:16:17:0/1:42 +chr11 64116843 . A C 22 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 64124595 . C T 50 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,9,0,9;MQ=49;PV4=1,0.0008,0.0044,1 PL:DP:SP:GT:GQ 80,0,207:19:0:0/1:83 +chr11 64147055 . a aGC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 64149085 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 64151896 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64157484 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 64189799 . t tTCACGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64222469 . tgc tGCCAgc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64225380 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 64242904 . TGGT TGGTGGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64249132 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64272170 . AG AGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64323271 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 64323783 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64339111 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64343007 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 64349299 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 64349763 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 64349765 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 64359857 . C T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 64360274 . T C 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=12,7,14,7;MQ=49;PV4=1,2.3e-12,0.017,0.19 PL:DP:SP:GT:GQ 176,0,255:40:0:0/1:99 +chr11 64365299 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 64366165 . C T 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 64377398 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 64391188 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64396737 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 64398304 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64407182 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 64412851 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64415998 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64419119 . C G 24 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,3;MQ=48;PV4=0.43,0.28,0.0042,1 PL:DP:SP:GT:GQ 54,0,102:7:4:0/1:57 +chr11 64419487 . C A 47 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=3,10,8,0;MQ=49;PV4=0.001,0.17,5.6e-09,1 PL:DP:SP:GT:GQ 77,0,206:21:30:0/1:80 +chr11 64434938 . C CGA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 64440574 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64453269 . G T 4.77 . DP=31;AF1=0.4999;CI95=0.5,0.5;DP4=4,4,1,2;MQ=49;PV4=1,0.15,0.0088,1 PL:DP:SP:GT:GQ 33,0,188:11:0:0/1:36 +chr11 64458567 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 64465403 . T C 69 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=46;PV4=1,0.18,0.00049,1 PL:DP:SP:GT:GQ 99,0,59:6:0:0/1:62 +chr11 64472208 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 64472541 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 64478302 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 64479579 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64482531 . g gTGATCGTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64483230 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 64484222 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64496300 . C CGA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.083 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 64496587 . T C 12 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 64497161 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64503496 . A G 22 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 64504614 . G C 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 64508929 . T G 7.8 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=46;PV4=0.33,0.034,0.27,1 PL:DP:SP:GT:GQ 37,0,41:3:0:0/1:39 +chr11 64514397 . T C 99 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=8,7,5,6;MQ=48;PV4=1,0.2,3.1e-05,1 PL:DP:SP:GT:GQ 178,0,255:26:0:0/1:99 +chr11 64519345 . G A 36 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,9,0;MQ=49;PV4=1,1.5e-06,1,1 PL:DP:SP:GT:GQ 66,0,191:18:0:0/1:69 +chr11 64521124 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64522181 . TC TCAAC 9.04 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,11,4,0;MQ=50;PV4=0.0027,1,1,0.071 PL:DP:SP:GT:GQ 46,0,145:16:26:0/1:49 +chr11 64525644 . G T 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 64536866 . T C 99 . DP=37;AF1=1;CI95=0.5,1;DP4=1,0,5,11;MQ=48;PV4=0.35,0.0025,0.13,1 PL:DP:SP:GT:GQ 157,11,0:17:0:1/1:66 +chr11 64537587 . C G 13.2 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,2;MQ=41;PV4=0.33,0.026,0.17,1 PL:DP:SP:GT:GQ 43,0,39:3:0:0/1:41 +chr11 64543927 . GT GTT 99 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=11,1,11,1;MQ=50;PV4=1,1,1,0.006 PL:DP:SP:GT:GQ 190,0,158:24:0:0/1:99 +chr11 64544135 . C T 4.13 . DP=32;AF1=0.4998;CI95=0.5,0.5;DP4=0,20,0,10;MQ=50;PV4=1,3.2e-19,0.08,1 PL:DP:SP:GT:GQ 32,0,244:30:0:0/1:35 +chr11 64557132 . C T 60 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,1,4,4;MQ=50;PV4=0.28,0.002,0.18,0.49 PL:DP:SP:GT:GQ 90,0,177:15:5:0/1:93 +chr11 64559898 . T C 14.2 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,2;MQ=48;PV4=1,0.06,1.5e-05,1 PL:DP:SP:GT:GQ 44,0,128:6:0:0/1:47 +chr11 64569158 . G GCA 6.55 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,38:2:0:0/1:40 +chr11 64570914 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 64572018 . T C 38.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 71,15,0:5:0:1/1:75 +chr11 64572557 . A G 99 . DP=21;AF1=0.5939;CI95=0.5,1;DP4=1,1,4,9;MQ=47;PV4=1,1,0.088,1 PL:DP:SP:GT:GQ 185,0,5:15:0:0/1:7 +chr11 64572602 . G A 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=11,7,3,8;MQ=48;PV4=0.13,0.00036,4.8e-12,0.023 PL:DP:SP:GT:GQ 208,0,255:29:9:0/1:99 +chr11 64575027 . C T 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 33,0,38:7:0:0/1:35 +chr11 64594490 . A G 34.1 . DP=33;AF1=0.5102;CI95=0.5,0.5;DP4=1,1,6,1;MQ=50;PV4=0.42,0.22,0.31,1 PL:DP:SP:GT:GQ 64,0,14:9:4:0/1:17 +chr11 64596855 . G C 10.5 . DP=11;AF1=0.505;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.25,0.45 PL:DP:SP:GT:GQ 40,0,17:5:0:0/1:20 +chr11 64598944 . A G 15.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.28,0.14,1 PL:DP:SP:GT:GQ 45,0,39:5:0:0/1:41 +chr11 64606177 . C T 46.1 . DP=38;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 79,18,0:6:0:1/1:90 +chr11 64606765 . T C 28.5 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 +chr11 64608172 . GCCCCCC GCCCCC 33.5 . INDEL;DP=25;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=50 PL:DP:SP:GT:GQ 74,54,0:18:0:1/1:99 +chr11 64612977 . CT CTACTCAGCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64619345 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64622419 . T G 94.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=44 PL:DP:SP:GT:GQ 127,15,0:5:0:1/1:75 +chr11 64627626 . G T 4.95 . DP=5;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 33,0,9:3:0:0/1:12 +chr11 64627635 . TCT TCTAGCT 4.52 . INDEL;DP=8;AF1=0.5207;CI95=0.5,0.5;DP4=1,0,0,1;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,11:2:0:0/1:14 +chr11 64634183 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 64658693 . C A 4.61 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 64663959 . C T 4.13 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,2;MQ=49;PV4=1,0.43,0.014,1 PL:DP:SP:GT:GQ 32,0,64:5:0:0/1:35 +chr11 64669417 . T C 30.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=47 PL:DP:SP:GT:GQ 63,12,0:4:0:1/1:72 +chr11 64673862 . G A 20 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,5;MQ=49;PV4=1,0.0019,0.0012,1 PL:DP:SP:GT:GQ 50,0,181:13:0:0/1:53 +chr11 64674917 . AAG AAGAG 3.25 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.36 PL:DP:SP:GT:GQ 38,0,93:4:0:0/1:41 +chr11 64678036 . T C 3.01 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,30:2:0:0/1:30 +chr11 64678312 . CCACAG CCACAGCACAG 7.37 . INDEL;DP=3;AF1=0.5032;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,19:2:0:0/1:22 +chr11 64680062 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64684570 . T G 33 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=8,5,0,8;MQ=49;PV4=0.0068,0.021,0.0012,0.057 PL:DP:SP:GT:GQ 63,0,239:21:22:0/1:66 +chr11 64687503 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64694192 . G A 8.64 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=48;PV4=1,0.34,0.04,1 PL:DP:SP:GT:GQ 38,0,68:8:0:0/1:41 +chr11 64698106 . T A 6.04 . DP=5;AF1=0.6242;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,4:3:0:0/1:6 +chr11 64699217 . C A 3.01 . DP=26;AF1=0.4997;CI95=0.5,0.5;DP4=12,3,0,5;MQ=50;PV4=0.0036,9.2e-05,0.011,0.27 PL:DP:SP:GT:GQ 30,0,255:20:24:0/1:33 +chr11 64702230 . AGGGG AGG 10.8 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,1,2,0;MQ=50;PV4=1,0.37,1,0.25 PL:DP:SP:GT:GQ 48,0,150:7:0:0/1:51 +chr11 64703163 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 64705895 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 64727256 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 64735825 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 64739387 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 64740637 . G GCACTTGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64795844 . TAGAAT TAGAATGACACAGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64799726 . ACT A 3.25 . INDEL;DP=16;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 64799729 . GT GTGAAGAT 11.8 . INDEL;DP=16;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 64801995 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 64806067 . CA CAGA 22.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=6,3,0,2;MQ=50;PV4=0.18,1,1,0.01 PL:DP:SP:GT:GQ 60,0,255:11:7:0/1:63 +chr11 64807131 . C T 6.98 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,0.45,0.25,1 PL:DP:SP:GT:GQ 36,0,50:8:0:0/1:39 +chr11 64811491 . GCA GCACCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64813286 . A ACGCTATATAGCGAAT 99 . INDEL;DP=18;AF1=1;CI95=1,1;DP4=0,0,12,1;MQ=50 PL:DP:SP:GT:GQ 255,39,0:13:0:1/1:99 +chr11 64825507 . GC GCCTTC 7.35 . INDEL;DP=8;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,34:2:0:0/1:37 +chr11 64846929 . G A 50 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,0,0,8;MQ=48;PV4=0.002,0.0036,0.0079,1 PL:DP:SP:GT:GQ 80,0,71:12:27:0/1:73 +chr11 64850798 . CAGA CAGAAGTGAGA 7.35 . INDEL;DP=7;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,31:2:0:0/1:34 +chr11 64851453 . CTT CT 76 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=50 PL:DP:SP:GT:GQ 116,12,0:4:0:1/1:72 +chr11 64854794 . G T 9.52 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=9,2,0,4;MQ=49;PV4=0.011,0.00028,0.00027,0.46 PL:DP:SP:GT:GQ 39,0,255:15:20:0/1:42 +chr11 64854868 . C T 3.01 . DP=15;AF1=0.4997;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.0087,0.056,1 PL:DP:SP:GT:GQ 30,0,111:5:0:0/1:33 +chr11 64874369 . ga gACTCCCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64874612 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64880743 . C T 25 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=48;PV4=1,0.13,0.011,1 PL:DP:SP:GT:GQ 55,0,86:6:0:0/1:58 +chr11 64888116 . G C 22 . DP=18;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,4,0;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 52,0,22:6:0:0/1:25 +chr11 64888882 . C G 11.3 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.11,0.19,1 PL:DP:SP:GT:GQ 41,0,59:6:0:0/1:44 +chr11 64890987 . ac aCTCGCCGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64898357 . GCC GCCC 99 . INDEL;DP=10;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=50 PL:DP:SP:GT:GQ 154,24,0:8:0:1/1:96 +chr11 64904380 . t tGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65046384 . C G 9.52 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,4;MQ=48;PV4=0.14,0.014,0.29,0.093 PL:DP:SP:GT:GQ 39,0,101:7:8:0/1:42 +chr11 65049811 . A C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65057450 . t tCTATCC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65060718 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 65062965 . GG GGTG 3.25 . INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.42 PL:DP:SP:GT:GQ 38,0,101:4:0:0/1:41 +chr11 65062970 . AA AAGCTA 5.08 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.37 PL:DP:SP:GT:GQ 41,0,47:3:0:0/1:43 +chr11 65088509 . G T 7.8 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=10,4,0,6;MQ=48;PV4=0.011,0.09,0.0034,1 PL:DP:SP:GT:GQ 37,0,229:20:20:0/1:40 +chr11 65107762 . CC CCCGC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 65130063 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 65130276 . g gTGCCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65144075 . T C 99 . DP=42;AF1=1;CI95=1,1;DP4=1,0,5,31;MQ=48;PV4=0.16,0.38,0.16,1 PL:DP:SP:GT:GQ 255,83,0:37:0:1/1:99 +chr11 65158939 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 65178620 . G A 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:DP:SP:GT:GQ 151,15,0:5:0:1/1:75 +chr11 65192727 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65259203 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 65266514 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 65267927 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65268466 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65279813 . tg tGTCAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65283997 . ag aGCCGg 7.35 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr11 65292983 . CC CCGC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 41,0,54:3:0:0/1:44 +chr11 65308254 . CAG C 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 65308777 . C T 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,13;MQ=46;PV4=0.38,0.037,4.1e-06,0.35 PL:DP:SP:GT:GQ 174,0,199:21:0:0/1:99 +chr11 65315357 . CCAC CCACAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65319751 . G A 78 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,8;MQ=47;PV4=1,0.017,0.034,0.17 PL:DP:SP:GT:GQ 108,0,67:11:0:0/1:70 +chr11 65321316 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 65324427 . GT GTCGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65327353 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 65337705 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 65338034 . A G 58 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,3,3,2;MQ=48;PV4=1,0.0062,0.023,0.21 PL:DP:SP:GT:GQ 88,0,220:12:0:0/1:91 +chr11 65338181 . G A 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,1;MQ=48;PV4=1,0.052,0,1 PL:DP:SP:GT:GQ 31,0,91:3:0:0/1:34 +chr11 65341522 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 65349849 . A T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 65373621 . A G 9.31 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 65380765 . T A 4.13 . DP=30;AF1=0.4998;CI95=0.5,0.5;DP4=6,9,0,5;MQ=49;PV4=0.26,0.0067,0.07,1 PL:DP:SP:GT:GQ 32,0,255:20:6:0/1:35 +chr11 65382545 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 65410298 . a aTC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 65422084 . A C 4.13 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=3,4,0,3;MQ=48;PV4=0.47,1,0.4,1 PL:DP:SP:GT:GQ 32,0,101:10:3:0/1:35 +chr11 65425185 . ct cTAATCGATt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65427346 . G A 6.2 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=0,9,0,4;MQ=50;PV4=1,5.9e-05,0.0045,1 PL:DP:SP:GT:GQ 35,0,204:13:0:0/1:38 +chr11 65429769 . C T 4.13 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.14,0.056,1 PL:DP:SP:GT:GQ 32,0,74:5:0:0/1:35 +chr11 65443238 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65454706 . A C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 65480768 . A G 44.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 76,6,0:2:0:1/1:49 +chr11 65480791 . A G 15.9 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr11 65481166 . T C 62 . DP=31;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49 PL:DP:SP:GT:GQ 95,24,0:8:0:1/1:96 +chr11 65483941 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 65494987 . C T 53.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 86,18,0:6:0:1/1:90 +chr11 65495176 . AC ACGC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.41 PL:DP:SP:GT:GQ 38,0,71:4:0:0/1:41 +chr11 65495331 . G GGCA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.2 PL:DP:SP:GT:GQ 41,0,62:3:0:0/1:44 +chr11 65513062 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65543325 . actc aCTCTCctc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65553047 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 65570291 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 65627583 . C CCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65627976 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65628469 . CAC CACAAAC 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65632262 . G T 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=3,11,3,15;MQ=49;PV4=1,2.5e-08,0.0074,1 PL:DP:SP:GT:GQ 163,0,255:32:0:0/1:99 +chr11 65633465 . G A 8.64 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,5,5,0;MQ=48;PV4=0.0079,0.088,0.2,0.36 PL:DP:SP:GT:GQ 38,0,96:10:21:0/1:41 +chr11 65635693 . A C 6.98 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,4,0;MQ=46;PV4=1,0.035,0.053,1 PL:DP:SP:GT:GQ 36,0,127:8:0:0/1:39 +chr11 65636053 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=1,0,14,4;MQ=45;PV4=1,1,0.011,1 PL:DP:SP:GT:GQ 255,38,0:19:0:1/1:99 +chr11 65637397 . AGT AGTGGAGTGT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,0,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 65637399 . TT TTTCT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,0.33 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 65637417 . CATG C 4.42 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 65637427 . CC CCGTAC 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,83:4:0:0/1:41 +chr11 65643255 . ccact c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 65646288 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 65649774 . A G 22.1 . DP=44;AF1=0.504;CI95=0.5,0.5;DP4=0,1,2,2;MQ=48;PV4=1,0.072,0.34,0.16 PL:DP:SP:GT:GQ 52,0,18:5:0:0/1:21 +chr11 65649984 . T C 99 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=10,17,4,9;MQ=49;PV4=1,4.1e-07,4.6e-11,1 PL:DP:SP:GT:GQ 160,0,255:40:0:0/1:99 +chr11 65655259 . gcc gCCcc 23.5 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,3;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 61,0,217:19:0:0/1:64 +chr11 65656164 . GGAG GGAGAG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 65664346 . T C 21 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 +chr11 65680662 . G GGGGCTTA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 65681493 . gca gCAGCTATTAca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65685225 . T C 3.02 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65708124 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 65732651 . G A 32.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 65,15,0:5:0:1/1:75 +chr11 65732800 . T C 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 65733289 . G A 20 . DP=34;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 65734444 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65744421 . C T 19.6 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 52,12,0:4:0:1/1:72 +chr11 65746653 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 65765682 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 65765777 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65767153 . A G 21.5 . DP=23;AF1=0.5554;CI95=0.5,1;DP4=1,0,1,3;MQ=47;PV4=0.4,1,0.11,1 PL:DP:SP:GT:GQ 51,0,7:5:0:0/1:10 +chr11 65769998 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 65771050 . TCACTGAGCACTGAGCA TCACTGAGCA 99 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 158,0,44:8:0:0/1:47 +chr11 65771060 . CTGAGCAG C 20.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,1,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 58,0,141:7:0:0/1:61 +chr11 65771203 . G A 4.77 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,0,3;MQ=46;PV4=0.14,0.037,1,1 PL:DP:SP:GT:GQ 33,0,132:8:8:0/1:36 +chr11 65783572 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65788072 . C T 99 . DP=14;AF1=1;CI95=0.5,1;DP4=1,0,5,5;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 186,10,0:11:0:1/1:60 +chr11 65790810 . G A 79.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 112,18,0:6:0:1/1:90 +chr11 65792968 . G A 3.41 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 65793454 . C T 27.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 65793797 . G A 99 . DP=75;AF1=1;CI95=1,1;DP4=0,1,29,32;MQ=44;PV4=1,1,0.0037,1 PL:DP:SP:GT:GQ 255,169,0:62:0:1/1:99 +chr11 65793874 . CAAAA CAAA 98.5 . INDEL;DP=37;AF1=1;CI95=1,1;DP4=0,1,1,20;MQ=50;PV4=1,0.0058,1,1 PL:DP:SP:GT:GQ 139,41,0:22:0:1/1:99 +chr11 65793880 . AG A 68.5 . INDEL;DP=37;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,8;MQ=50;PV4=1,0.23,1,1 PL:DP:SP:GT:GQ 106,0,107:14:0:0/1:99 +chr11 65810490 . C T 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.096,0,1 PL:DP:SP:GT:GQ 31,0,83:3:0:0/1:34 +chr11 65824472 . C T 33.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 65825951 . T A 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr11 65832786 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 65835853 . C G 4.81 . DP=5;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.33,0.17,1 PL:DP:SP:GT:GQ 33,0,15:3:0:0/1:18 +chr11 65838839 . TA TATCCGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65874761 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 65881528 . T TGAC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 65928468 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 65932268 . GT GTCTCTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65946771 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 65976189 . a aCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65983522 . A G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=46 PL:DP:SP:GT:GQ 150,45,0:15:0:1/1:99 +chr11 65995028 . T G 8.65 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=47;PV4=1,1,0.065,1 PL:DP:SP:GT:GQ 38,0,35:4:0:0/1:36 +chr11 65996632 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66030262 . A T 4.13 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66031859 . C T 6.2 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,3,1;MQ=48;PV4=0.4,0.13,0.14,1 PL:DP:SP:GT:GQ 35,0,52:6:4:0/1:38 +chr11 66040053 . A G 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 66048856 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 66083129 . T C 63 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49 PL:DP:SP:GT:GQ 96,24,0:8:0:1/1:96 +chr11 66083782 . G A 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=45 PL:DP:SP:GT:GQ 140,15,0:5:0:1/1:75 +chr11 66084056 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66099987 . C T 47.1 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 80,18,0:6:0:1/1:90 +chr11 66100152 . T C 31 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr11 66101974 . C T 90.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 123,12,0:4:0:1/1:72 +chr11 66107674 . A G 99 . DP=32;AF1=1;CI95=1,1;DP4=0,1,4,21;MQ=44;PV4=1,1,6.8e-05,1 PL:DP:SP:GT:GQ 255,55,0:26:0:1/1:99 +chr11 66108660 . C T 84.4 . DP=13;AF1=1;CI95=0.5,1;DP4=0,1,8,3;MQ=49;PV4=0.33,0.22,0.38,1 PL:DP:SP:GT:GQ 117,13,0:12:0:1/1:65 +chr11 66119050 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 66157797 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66187168 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 66188761 . G T 93.5 . DP=39;AF1=1;CI95=0.5,1;DP4=1,0,5,5;MQ=49;PV4=1,0.21,0.24,1 PL:DP:SP:GT:GQ 125,7,0:11:0:1/1:57 +chr11 66203056 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 66209301 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 66227298 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66240882 . T C 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,4,11;MQ=45 PL:DP:SP:GT:GQ 255,45,0:15:0:1/1:99 +chr11 66241359 . T A 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=1,3,1,2;MQ=48;PV4=1,0.47,0.052,0.097 PL:DP:SP:GT:GQ 31,0,45:7:0:0/1:34 +chr11 66254085 . G T 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,7,13;MQ=49 PL:DP:SP:GT:GQ 209,60,0:20:0:1/1:99 +chr11 66260976 . C CTCTA 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 66272142 . A G 45 . DP=37;AF1=0.504;CI95=0.5,0.5;DP4=1,0,2,4;MQ=49;PV4=0.43,0.0045,1,1 PL:DP:SP:GT:GQ 75,0,18:7:0:0/1:21 +chr11 66272237 . G A 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,9,27;MQ=48 PL:DP:SP:GT:GQ 255,108,0:36:0:1/1:99 +chr11 66282095 . G A 99 . DP=53;AF1=1;CI95=1,1;DP4=0,0,29,16;MQ=43 PL:DP:SP:GT:GQ 255,135,0:45:0:1/1:99 +chr11 66283257 . C T 80.1 . DP=22;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=49 PL:DP:SP:GT:GQ 113,21,0:7:0:1/1:84 +chr11 66283453 . T G 6.79 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 66283456 . AAA AAACTAGAA 7.37 . INDEL;DP=7;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr11 66288490 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 66288733 . G C 99 . DP=34;AF1=1;CI95=1,1;DP4=1,0,26,1;MQ=48;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 190,69,0:28:0:1/1:99 +chr11 66293779 . T C 90.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 123,12,0:4:0:1/1:72 +chr11 66297363 . C T 48.3 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 81,15,0:5:0:1/1:75 +chr11 66298594 . C T 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 66314739 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66322156 . C CAG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 66323946 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 66325907 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 66331458 . A G 47.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=50 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr11 66331657 . T G 7.19 . DP=6;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.2,0.18 PL:DP:SP:GT:GQ 36,0,9:3:0:0/1:12 +chr11 66333991 . A G 19.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 66347520 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66360505 . C CCCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 66373123 . G C 3.01 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,1,1;MQ=49;PV4=1,0.00077,0.048,0.024 PL:DP:SP:GT:GQ 30,0,79:4:0:0/1:33 +chr11 66384487 . T A 24.8 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 66456389 . GC GCTC 3.8 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,38:2:0:0/1:38 +chr11 66458980 . G A 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=44 PL:DP:SP:GT:GQ 184,24,0:8:0:1/1:96 +chr11 66460527 . C T 70.1 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=48 PL:DP:SP:GT:GQ 103,18,0:6:0:1/1:90 +chr11 66467204 . AG AGTG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.13 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 66467901 . G A 7.82 . DP=3;AF1=0.5031;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,19:2:0:0/1:22 +chr11 66473444 . A C 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 66475533 . A T 20 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=49;PV4=1,0.15,0.18,1 PL:DP:SP:GT:GQ 50,0,90:9:0:0/1:53 +chr11 66481772 . C A 31 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,0;MQ=48;PV4=1,0.2,0.0053,1 PL:DP:SP:GT:GQ 61,0,90:10:0:0/1:64 +chr11 66487711 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 66490525 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 66508396 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 66512585 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66565022 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 66577446 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66585452 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66593169 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66617286 . G A 4.77 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=2,10,2,1;MQ=48;PV4=0.15,0.12,0.058,1 PL:DP:SP:GT:GQ 33,0,232:15:8:0/1:36 +chr11 66630072 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66638798 . CG C 6.55 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=4,5,3,0;MQ=50;PV4=0.2,0.4,1,0.094 PL:DP:SP:GT:GQ 43,0,185:12:7:0/1:46 +chr11 66652340 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66653699 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66671688 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66676220 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 66680058 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66686351 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66718028 . ACAAGC A 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 66765565 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66769631 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 66797711 . G C 3.98 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 66807168 . A G 6.79 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 66813634 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66833757 . G C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66834165 . G A 7.8 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,3,0;MQ=47;PV4=0.25,0.0063,0.037,1 PL:DP:SP:GT:GQ 37,0,40:4:0:0/1:38 +chr11 66837965 . T C 88.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=48 PL:DP:SP:GT:GQ 121,21,0:7:0:1/1:84 +chr11 66911082 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 66959675 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67016162 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 67021345 . GG GGGGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67034866 . TGGGG TGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 67050543 . G A 7.8 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,0.25,0.031,0.12 PL:DP:SP:GT:GQ 37,0,69:7:0:0/1:40 +chr11 67051201 . C T 5.46 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=47;PV4=1,0.25,0.15,1 PL:DP:SP:GT:GQ 34,0,60:4:0:0/1:37 +chr11 67051594 . C CTGTGGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67056258 . AGTGG AG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 67059251 . GC GCGTCC 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 67067228 . CAG C 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 67067650 . C T 3.01 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=0,5,0,4;MQ=49;PV4=1,0.15,0.0028,1 PL:DP:SP:GT:GQ 30,0,75:9:0:0/1:33 +chr11 67068846 . C T 12.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,0,0,5;MQ=48;PV4=0.0079,0.00046,0.029,1 PL:DP:SP:GT:GQ 42,0,118:9:21:0/1:45 +chr11 67075404 . CAAA CA 26.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,3;MQ=50;PV4=0.4,1,1,0.39 PL:DP:SP:GT:GQ 64,0,60:6:4:0/1:62 +chr11 67077229 . G A 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,0,0.15 PL:DP:SP:GT:GQ 33,0,66:3:0:0/1:36 +chr11 67117576 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 67119345 . CCT CCTCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr11 67119520 . ACCCC ACC 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 67123661 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 67127738 . a aCAGGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67129252 . c cGACGAA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 67130177 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67135006 . A T 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=43 PL:DP:SP:GT:GQ 197,24,0:8:0:1/1:96 +chr11 67141545 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 67160961 . A G 99 . DP=27;AF1=1;CI95=0.5,1;DP4=1,0,21,0;MQ=46;PV4=1,0.00058,0.024,0.13 PL:DP:SP:GT:GQ 152,16,0:22:0:1/1:80 +chr11 67163628 . A G 99 . DP=70;AF1=1;CI95=1,1;DP4=1,0,30,29;MQ=44;PV4=1,1,0.00046,1 PL:DP:SP:GT:GQ 255,162,0:60:0:1/1:99 +chr11 67164791 . T C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 67166337 . G A 53.8 . DP=44;AF1=1;CI95=0.5,1;DP4=0,2,1,10;MQ=49;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 85,6,0:13:0:1/1:49 +chr11 67172911 . C T 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,4,7;MQ=46 PL:DP:SP:GT:GQ 217,33,0:11:0:1/1:99 +chr11 67174441 . G A 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,1,0;MQ=48;PV4=1,1,0,0.25 PL:DP:SP:GT:GQ 31,0,79:4:0:0/1:34 +chr11 67177279 . G A 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 67179801 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 67192370 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 67196544 . C G 99 . DP=12;AF1=1;CI95=0.5,1;DP4=0,1,4,6;MQ=45;PV4=1,1,0.016,1 PL:DP:SP:GT:GQ 201,7,0:11:0:1/1:57 +chr11 67196859 . C CA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 67200819 . C T 41.5 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 67201615 . C T 28 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 +chr11 67202044 . G A 31.3 . DP=6;AF1=0.543;CI95=0.5,1;DP4=1,0,4,0;MQ=48;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 61,0,8:5:0:0/1:11 +chr11 67202156 . C T 56 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 89,24,0:8:0:1/1:96 +chr11 67218123 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 67234895 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 67254464 . A C 23 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,9,6,0;MQ=48;PV4=0.00087,0.23,0.057,1 PL:DP:SP:GT:GQ 53,0,156:16:31:0/1:56 +chr11 67256776 . C T 7.09 . DP=2;AF1=0.5162;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,12:2:0:0/1:15 +chr11 67257823 . C A 76.1 . DP=39;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=49 PL:DP:SP:GT:GQ 109,21,0:7:0:1/1:84 +chr11 67261497 . G T 3.55 . DP=14;AF1=0.5011;CI95=0.5,0.5;DP4=0,2,1,1;MQ=47;PV4=1,1,1,0.088 PL:DP:SP:GT:GQ 31,0,23:4:0:0/1:25 +chr11 67261507 . C T 8.83 . DP=9;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.17,0.33 PL:DP:SP:GT:GQ 38,0,10:3:0:0/1:13 +chr11 67262845 . C A 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0.023,0,1 PL:DP:SP:GT:GQ 31,0,114:4:0:0/1:34 +chr11 67263144 . C T 33.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 67263767 . A G 6.02 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 67264679 . C T 23 . DP=7;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,3,0;MQ=46;PV4=0.25,0.0043,1,0.29 PL:DP:SP:GT:GQ 53,0,31:4:0:0/1:34 +chr11 67265814 . C A 33.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 67268001 . C CTCT 7.62 . INDEL;DP=2;AF1=0.543;CI95=0.5,1;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 67274147 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67279327 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 67289801 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 67297743 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 67313564 . ga gAAAAAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67352689 . A G 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,6,32;MQ=45 PL:DP:SP:GT:GQ 255,114,0:38:0:1/1:99 +chr11 67352821 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 67353970 . T C 97 . DP=12;AF1=1;CI95=1,1;DP4=0,0,8,1;MQ=47 PL:DP:SP:GT:GQ 130,27,0:9:0:1/1:99 +chr11 67400622 . G A 70.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=48 PL:DP:SP:GT:GQ 103,18,0:6:0:1/1:90 +chr11 67402744 . G A 25.5 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr11 67422511 . ga gAACCCGCACCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67430762 . T C 51 . DP=11;AF1=0.501;CI95=0.5,0.5;DP4=1,1,3,2;MQ=49;PV4=1,1,0.057,1 PL:DP:SP:GT:GQ 81,0,24:7:0:0/1:27 +chr11 67433168 . GC GCTC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.36 PL:DP:SP:GT:GQ 38,0,75:3:0:0/1:41 +chr11 67434416 . C A 48.5 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=49 PL:DP:SP:GT:GQ 81,12,0:4:0:1/1:72 +chr11 67438961 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 67445689 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67450364 . A G 86 . DP=17;AF1=1;CI95=1,1;DP4=0,1,5,9;MQ=15;PV4=1,1,1,1 PL:DP:SP:GT:GQ 119,33,0:15:0:1/1:99 +chr11 67453186 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67455551 . t tCTCTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67470817 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67508202 . T TGAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67513001 . A T 3.02 . DP=2;AF1=0.5023;CI95=0.5,0.5;DP4=0,1,0,1;MQ=35;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,20:2:0:0/1:23 +chr11 67519937 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67553681 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 67554590 . A G 31 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=32 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr11 67559770 . C A 99 . DP=18;AF1=0.5207;CI95=0.5,1;DP4=2,0,5,9;MQ=38;PV4=0.17,0.022,0.061,1 PL:DP:SP:GT:GQ 131,0,11:16:8:0/1:14 +chr11 67564197 . T C 51.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=17 PL:DP:SP:GT:GQ 84,21,0:7:0:1/1:84 +chr11 67565172 . C T 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=22 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 67569004 . C CTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67574625 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67587812 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 67660505 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 67673027 . A G 57 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 89,9,0:3:0:1/1:63 +chr11 67714592 . GG GGAAG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 67764735 . GC GCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 67769952 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67789293 . GC GCC 23.2 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 62,6,0:2:0:1/1:49 +chr11 67799731 . C G 3.23 . DP=47;AF1=0.5552;CI95=0.5,1;DP4=0,1,0,2;MQ=50;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 30,0,7:3:0:0/1:10 +chr11 67800128 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 67804442 . T A 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 67808552 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 67814979 . G C 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,1,13;MQ=47 PL:DP:SP:GT:GQ 172,42,0:14:0:1/1:99 +chr11 67818331 . C G 14.2 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,1,0.00017,1 PL:DP:SP:GT:GQ 44,0,54:10:0:0/1:47 +chr11 67821912 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 67842369 . C T 82 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=48 PL:DP:SP:GT:GQ 115,30,0:10:0:1/1:99 +chr11 67888334 . CG CGAGTG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,91:3:0:0/1:44 +chr11 67915875 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 67925319 . A G 4.13 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=4,4,2,1;MQ=49;PV4=1,0.15,0.0082,1 PL:DP:SP:GT:GQ 32,0,145:11:0:0/1:35 +chr11 67925352 . A T 10.4 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=5,7,5,0;MQ=49;PV4=0.044,0.1,4.7e-08,1 PL:DP:SP:GT:GQ 40,0,219:17:14:0/1:43 +chr11 67938443 . A ATATATTT 7.49 . INDEL;DP=14;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 67938946 . G GNNNNN 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67938947 . G A 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 67957518 . A T 61.3 . DP=60;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=48 PL:DP:SP:GT:GQ 94,15,0:5:0:1/1:75 +chr11 67986700 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 68022244 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68022352 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68029887 . G A 73.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=48 PL:DP:SP:GT:GQ 106,18,0:6:0:1/1:90 +chr11 68084592 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68097178 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68115636 . A C 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=11,0,0,4;MQ=48;PV4=0.00073,0.018,0.031,0.14 PL:DP:SP:GT:GQ 41,0,192:15:31:0/1:44 +chr11 68138686 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68139067 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 68169136 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68171013 . T C 9.49 . DP=32;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 41,9,0:3:0:1/1:63 +chr11 68177510 . C T 99 . DP=46;AF1=1;CI95=1,1;DP4=1,1,12,21;MQ=48;PV4=1,0.0096,0.19,1 PL:DP:SP:GT:GQ 204,42,0:35:0:1/1:99 +chr11 68180350 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 68181088 . G A 3.01 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.045,0.21,1 PL:DP:SP:GT:GQ 30,0,50:4:0:0/1:33 +chr11 68190993 . C A 42 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,0,0,7;MQ=49;PV4=0.00058,5.5e-09,0.0087,1 PL:DP:SP:GT:GQ 72,0,167:13:32:0/1:75 +chr11 68196724 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68196961 . C T 74.1 . DP=24;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=47 PL:DP:SP:GT:GQ 107,21,0:7:0:1/1:84 +chr11 68201040 . G A 99 . DP=21;AF1=1;CI95=1,1;DP4=1,0,6,5;MQ=46;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 201,21,0:12:0:1/1:84 +chr11 68204307 . G T 7.11 . DP=6;AF1=0.5206;CI95=0.5,1;DP4=1,0,2,0;MQ=45;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 36,0,11:3:0:0/1:14 +chr11 68206980 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 68224370 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68263111 . c cCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68271182 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68273501 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68315798 . C A 55.1 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 88,18,0:6:0:1/1:90 +chr11 68326236 . C T 49 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=50 PL:DP:SP:GT:GQ 82,24,0:8:0:1/1:96 +chr11 68330866 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68334726 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68353698 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68358106 . CTTTTATTTT CTTTT 99 . INDEL;DP=14;AF1=1;CI95=0.5,1;DP4=1,0,7,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 182,9,0:8:0:1/1:63 +chr11 68358111 . A G 54.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=46 PL:DP:SP:GT:GQ 87,12,0:4:0:1/1:72 +chr11 68377602 . A C 27.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 59,6,0:2:0:1/1:49 +chr11 68385579 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 68420798 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 68421416 . G A 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 68422867 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68425034 . A T 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 68432689 . GC GCAGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68435261 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 68435408 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 68438092 . GCTTT G 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 68451350 . GG GGTAG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 68453571 . T TACTG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 68455596 . G T 26 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=48;PV4=1,1,0.085,1 PL:DP:SP:GT:GQ 56,0,41:10:0:0/1:44 +chr11 68456227 . AGCG A 4.42 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=49;PV4=1,1,1,0.46 PL:DP:SP:GT:GQ 40,0,58:3:0:0/1:43 +chr11 68456410 . T C 17.1 . DP=16;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.24,0.24,1 PL:DP:SP:GT:GQ 47,0,16:4:0:0/1:19 +chr11 68476011 . A G 35.1 . DP=6;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 65,0,16:4:0:0/1:19 +chr11 68477571 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68478511 . T A 16.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=7,3,0,5;MQ=49;PV4=0.026,0.021,0.019,0.2 PL:DP:SP:GT:GQ 46,0,217:15:16:0/1:49 +chr11 68479039 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 68490121 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68515544 . T TTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68530257 . C T 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,3,21;MQ=47 PL:DP:SP:GT:GQ 210,72,0:24:0:1/1:99 +chr11 68533850 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68548483 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68552486 . G A 67 . DP=31;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 100,24,0:8:0:1/1:96 +chr11 68560798 . G A 8.64 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,5,3,0;MQ=48;PV4=0.17,0.02,0.0025,0.43 PL:DP:SP:GT:GQ 38,0,199:10:8:0/1:41 +chr11 68581070 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68588049 . gctg gCTGTctg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68590049 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68596626 . TC TCTAGAGAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68613019 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 68626844 . c cGAGTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68650408 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 68653530 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 68668465 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 68680924 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68682031 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 68699921 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68700814 . A T 6.98 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=48;PV4=0.33,0.03,0.077,0.26 PL:DP:SP:GT:GQ 36,0,41:3:0:0/1:38 +chr11 68703766 . C A 23 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,5,0,5;MQ=48;PV4=0.23,0.069,0.023,1 PL:DP:SP:GT:GQ 53,0,179:13:6:0/1:56 +chr11 68722699 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 68723289 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68724729 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68731024 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 68748003 . T C 99 . DP=36;AF1=1;CI95=1,1;DP4=1,0,12,16;MQ=49;PV4=0.45,0.043,0.31,1 PL:DP:SP:GT:GQ 216,56,0:29:0:1/1:99 +chr11 68754258 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 68763140 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68764579 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68766634 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68770917 . TGG TGGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68780717 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68786319 . c cCGAGCACAACG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 68803807 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68816745 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 68816801 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68817652 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 68825037 . A C 42 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=14,2,11,2;MQ=50;PV4=1,6.5e-12,0.03,1 PL:DP:SP:GT:GQ 72,0,255:29:0:0/1:75 +chr11 68829403 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 68840412 . C G 20 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=19,9,7,1;MQ=49;PV4=0.4,0.00077,0.00053,0.13 PL:DP:SP:GT:GQ 50,0,255:36:4:0/1:53 +chr11 68846098 . A G 55 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=0,17,1,20;MQ=50;PV4=1,3.5e-17,0.029,1 PL:DP:SP:GT:GQ 85,0,230:38:0:0/1:88 +chr11 68847932 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 68848989 . AC ACCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68867181 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68872325 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68875589 . G GCTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68879969 . AG AGTAATAAAGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68893761 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68894434 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68916599 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68961285 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68979861 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 68991394 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68992695 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 69000011 . t tCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69011028 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69019649 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69037421 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69063476 . C T 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=8,2,10,2;MQ=47;PV4=1,6.4e-08,0.0021,1 PL:DP:SP:GT:GQ 153,0,255:22:0:0/1:99 +chr11 69071168 . T C 40 . DP=8;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,3,0;MQ=41;PV4=0.1,0.16,1,0.31 PL:DP:SP:GT:GQ 70,0,30:5:10:0/1:33 +chr11 69089473 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69141569 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 69168198 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69187360 . g gTTCCTTGGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69194489 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69197083 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 69202292 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69205417 . C T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 69224768 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69231637 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69239470 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69247381 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69269838 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69297897 . G C 4.77 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,29:2:0:0/1:31 +chr11 69302059 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69306502 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 69306900 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 69311120 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69331000 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69368440 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 69400058 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69400905 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69434249 . GGG GGGTAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69440605 . acc aCCGAGGcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69442684 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69472421 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69479690 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69488154 . C A 3.56 . DP=6;AF1=0.503;CI95=0.5,0.5;DP4=0,1,0,5;MQ=50;PV4=1,0,1,1 PL:DP:SP:GT:GQ 31,0,19:6:0:0/1:22 +chr11 69507186 . a aGCTGTGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69512143 . GCACT GCACTACACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69514235 . T G 3.54 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=1,4,0,2;MQ=49;PV4=1,0.048,6.4e-06,1 PL:DP:SP:GT:GQ 31,0,168:7:0:0/1:34 +chr11 69519112 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69532310 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69534444 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69535333 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69544942 . G T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 69552080 . C T 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 69552358 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69574208 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69591749 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69625349 . G T 3.55 . DP=5;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,0.061,0.23,1 PL:DP:SP:GT:GQ 31,0,26:3:0:0/1:28 +chr11 69625511 . T C 30 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,6;MQ=49;PV4=1,2.9e-07,0.00042,1 PL:DP:SP:GT:GQ 60,0,229:19:0:0/1:63 +chr11 69630470 . C CGAGTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69630978 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69632336 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69657607 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69663454 . t tCG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 69672002 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69679605 . C CTG 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 69792182 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69793275 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69805353 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69806451 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69846111 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69852055 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69857990 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69864654 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69866690 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69870256 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69870261 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69912235 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69932836 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 69937215 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69967383 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 69979077 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69996618 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 70004477 . TA TAAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70016922 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 70027358 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70053674 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 70074241 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 70075701 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70080467 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70089246 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 70092750 . C CTTT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 70134802 . t tCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70170166 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 70170629 . T G 8.64 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,0.16,0.015,1 PL:DP:SP:GT:GQ 38,0,51:5:0:0/1:41 +chr11 70170630 . CA CAAA 3.25 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,66:4:0:0/1:41 +chr11 70178323 . GT GTGACTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70201977 . T G 4.77 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=0,10,0,4;MQ=49;PV4=1,0.26,0.27,0.046 PL:DP:SP:GT:GQ 33,0,102:14:0:0/1:36 +chr11 70208350 . G A 92 . DP=34;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=48 PL:DP:SP:GT:GQ 125,24,0:8:0:1/1:96 +chr11 70223538 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 70230980 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70230998 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 70265975 . T G 4.13 . DP=22;AF1=0.4998;CI95=0.5,0.5;DP4=0,8,0,3;MQ=47;PV4=1,0.14,0.029,0.3 PL:DP:SP:GT:GQ 32,0,139:11:0:0/1:35 +chr11 70290048 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 70325061 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 70327827 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 70332694 . T C 4.13 . DP=22;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,0,6;MQ=49;PV4=0.0022,2.6e-06,0.01,0.34 PL:DP:SP:GT:GQ 32,0,165:12:27:0/1:35 +chr11 70347863 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 70349061 . A G 99 . DP=57;AF1=1;CI95=1,1;DP4=0,1,10,38;MQ=46;PV4=1,1,0.017,1 PL:DP:SP:GT:GQ 255,120,0:49:0:1/1:99 +chr11 70360005 . t tG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 70372508 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70383582 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70383896 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 70430236 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 70450393 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 70453602 . CT CTTGGTGAGTGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70456120 . caga cAGAGaga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70469962 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 70475752 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70491980 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 70501474 . g gCCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70507032 . G GTTTTGCCA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 70517741 . CT CTCCATCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70522735 . T G 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,38:2:0:0/1:33 +chr11 70542127 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70545410 . T TCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70545765 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70550978 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70564792 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 70565145 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70609134 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 70614539 . AA AAGCTCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70634907 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 70639898 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70646735 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70676197 . AA AACCTA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 70707993 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70711357 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70716035 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70730419 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70731715 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 70733850 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70736156 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 70743778 . CTTT CTTTTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70851720 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70851821 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 70900409 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70901703 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 70903926 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70924486 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 70976001 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70977166 . CT CTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71018142 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 71051272 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 71053454 . ggctgag gg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71079063 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71086618 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71125567 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 71126604 . gttctt g 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71142614 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71143356 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71150217 . C T 11.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 71152461 . A G 99 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,6;MQ=46;PV4=1,0.18,1.3e-05,0.4 PL:DP:SP:GT:GQ 130,0,213:14:0:0/1:99 +chr11 71154328 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71154494 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 71158892 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 71169547 . G C 99 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=18,28,11,10;MQ=49;PV4=0.43,4.7e-17,7.9e-08,0.099 PL:DP:SP:GT:GQ 145,0,255:67:4:0/1:99 +chr11 71169648 . A G 66 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=4,16,2,4;MQ=49;PV4=0.6,0.0017,1.2e-10,1 PL:DP:SP:GT:GQ 96,0,255:26:2:0/1:99 +chr11 71169672 . C A 25 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,17,0,7;MQ=48;PV4=1,0.012,0.0085,1 PL:DP:SP:GT:GQ 55,0,206:24:0:0/1:58 +chr11 71183477 . C CTT 13.7 . INDEL;DP=20;AF1=0.5;CI95=0.5,0.5;DP4=6,1,2,0;MQ=50;PV4=1,0.22,1,0.015 PL:DP:SP:GT:GQ 51,0,222:9:0:0/1:54 +chr11 71185357 . G A 26 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=49;PV4=1,0.14,0.0033,1 PL:DP:SP:GT:GQ 56,0,112:12:0:0/1:59 +chr11 71185479 . T C 99 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=12,16,13,15;MQ=49;PV4=1,2.4e-27,0.042,1 PL:DP:SP:GT:GQ 170,0,255:56:0:0/1:99 +chr11 71207071 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 71221908 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71252617 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 71292052 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 71333491 . gt gTCACt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71370654 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 71401505 . A C 3.54 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=3,7,2,3;MQ=20;PV4=1,9.2e-06,1,1 PL:DP:SP:GT:GQ 31,0,74:15:0:0/1:34 +chr11 71418058 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 71418162 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71471586 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 71478062 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71511869 . C T 5.85 . DP=13;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,2;MQ=38;PV4=1,0.028,1,1 PL:DP:SP:GT:GQ 34,2,0:3:0:1/1:37 +chr11 71513891 . G GCT 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=37;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 38,0,55:4:0:0/1:41 +chr11 71529217 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71548645 . T C 9.31 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 71571671 . A ATGGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71648996 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 71668231 . T G 8.65 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,1,1,0.25 PL:DP:SP:GT:GQ 38,0,37:6:0:0/1:37 +chr11 71668232 . T G 41 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=8,0,7,0;MQ=46;PV4=1,1,0.067,1 PL:DP:SP:GT:GQ 71,0,82:15:0:0/1:74 +chr11 71668240 . G C 3.01 . DP=23;AF1=0.4997;CI95=0.5,0.5;DP4=9,0,4,0;MQ=48;PV4=1,0.081,0.00099,1 PL:DP:SP:GT:GQ 30,0,164:13:0:0/1:33 +chr11 71668362 . CTT CT 40.4 . INDEL;DP=16;AF1=0.6671;CI95=0.5,1;DP4=0,1,0,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 77,0,3:6:0:0/1:5 +chr11 71686990 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71707465 . T C 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 135,33,0:11:0:1/1:99 +chr11 71712175 . G A 30 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 +chr11 71715215 . C G 8.83 . DP=10;AF1=0.5263;CI95=0.5,1;DP4=1,0,0,2;MQ=47;PV4=0.33,1,0.29,1 PL:DP:SP:GT:GQ 38,0,10:3:0:0/1:13 +chr11 71715694 . T TCTC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,103:4:0:0/1:41 +chr11 71727422 . A C 23 . DP=62;AF1=0.5004;CI95=0.5,0.5;DP4=1,1,1,4;MQ=50;PV4=1,0.08,0.29,1 PL:DP:SP:GT:GQ 53,0,28:7:0:0/1:31 +chr11 71728908 . AGTCAACG AG 99 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,14;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 231,0,130:19:0:0/1:99 +chr11 71729077 . T C 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,1,0;MQ=48;PV4=1,0.15,0,1 PL:DP:SP:GT:GQ 32,0,88:3:0:0/1:35 +chr11 71740290 . A T 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,1,2;MQ=50;PV4=0.46,0.2,0.042,1 PL:DP:SP:GT:GQ 33,0,92:8:3:0/1:36 +chr11 71740378 . AACA AACACA,AA 80.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 147,36,117,27,0,114:4:0:1/1:63 +chr11 71743992 . c cGATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71747015 . A G 6.2 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=0,5,0,3;MQ=49;PV4=1,0.16,0.0045,1 PL:DP:SP:GT:GQ 35,0,101:8:0:0/1:38 +chr11 71759878 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 71815195 . T G 23 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=44 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr11 71827469 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 71835747 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 71837388 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 71852448 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71889154 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71899547 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71902878 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71902882 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71903054 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 71911810 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 71939048 . T A 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 71941212 . A G 29 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,10;MQ=50;PV4=0.49,1.8e-10,0.13,1 PL:DP:SP:GT:GQ 59,0,255:23:3:0/1:62 +chr11 71941381 . A G 70.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 103,12,0:4:0:1/1:72 +chr11 71944248 . C G 9.54 . DP=6;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 39,0,20:3:0:0/1:23 +chr11 71944253 . G T,C 6.02 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 48,18,35,12,0,35:3:0:1/1:49 +chr11 71946479 . C T 6.04 . DP=12;AF1=0.6242;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.41,0.4 PL:DP:SP:GT:GQ 34,0,4:3:0:0/1:6 +chr11 71947013 . GG GGTG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 71968231 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 71977745 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 71992032 . C T 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,1,0;MQ=48;PV4=0.33,1,0,1 PL:DP:SP:GT:GQ 30,0,55:3:0:0/1:33 +chr11 72013862 . A T 3.08 . DP=2;AF1=0.516;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,12:2:0:0/1:15 +chr11 72024697 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 72028746 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 72029446 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 72045900 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72056327 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72064647 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72074322 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 72077454 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72087482 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72089014 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 72114231 . G T 23 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=49;PV4=1,4.2e-06,0.013,1 PL:DP:SP:GT:GQ 53,0,131:9:0:0/1:56 +chr11 72137946 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72157867 . TC TCCCCCTTATCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72171275 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 72192811 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 72249186 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 72255325 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72279699 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 72287273 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 72288650 . TGGGGGG TGGGGG 53.5 . INDEL;DP=22;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=50 PL:DP:SP:GT:GQ 94,21,0:7:0:1/1:84 +chr11 72288664 . C T 99 . DP=17;AF1=1;CI95=0.5,1;DP4=0,1,0,13;MQ=47;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 133,18,0:14:0:1/1:90 +chr11 72288725 . C T 3.98 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 72292353 . GA GAA 33.4 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 73,9,0:3:0:1/1:63 +chr11 72292913 . G A 3.54 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=4,4,3,0;MQ=48;PV4=0.24,0.12,0.009,0.44 PL:DP:SP:GT:GQ 31,0,190:11:6:0/1:34 +chr11 72293039 . G A 42.1 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 75,18,0:6:0:1/1:90 +chr11 72293602 . A G 99 . DP=49;AF1=1;CI95=1,1;DP4=0,1,7,27;MQ=44;PV4=1,1,0.008,1 PL:DP:SP:GT:GQ 255,88,0:35:0:1/1:99 +chr11 72295906 . A G 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,33,0;MQ=49 PL:DP:SP:GT:GQ 140,99,0:33:0:1/1:99 +chr11 72305801 . ctt c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 72308093 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72317758 . CC CCGGTCAACGC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=47 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 72326210 . A G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,1,0,15;MQ=43;PV4=1,1,0,1 PL:DP:SP:GT:GQ 212,25,0:16:0:1/1:99 +chr11 72329389 . CC CCAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72334944 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72344996 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72380043 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 72391909 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72399451 . A G 5.46 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,0.0013,0.14,1 PL:DP:SP:GT:GQ 34,0,132:7:0:0/1:37 +chr11 72404751 . A G 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=4,0,1,1;MQ=49;PV4=0.33,0.25,0.015,0.28 PL:DP:SP:GT:GQ 31,0,94:6:0:0/1:34 +chr11 72405135 . ACACCACCACCACC ACACCACCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72405896 . G GCTATC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 38,0,86:4:0:0/1:41 +chr11 72405935 . CTCA CTCAGTCA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,66:3:0:0/1:44 +chr11 72405937 . CA CAGAA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.15 PL:DP:SP:GT:GQ 41,0,60:3:0:0/1:44 +chr11 72405941 . T A 3.03 . DP=6;AF1=0.5037;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.089,0.33,0.26 PL:DP:SP:GT:GQ 30,0,18:3:0:0/1:21 +chr11 72410820 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72412763 . T A 33 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=11,5,1,5;MQ=49;PV4=0.056,0.21,2.6e-07,1 PL:DP:SP:GT:GQ 63,0,233:22:13:0/1:66 +chr11 72420270 . a aGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 72420932 . C T 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=6,6,6,0;MQ=50;PV4=0.054,9.5e-06,0.082,0.44 PL:DP:SP:GT:GQ 31,0,255:18:13:0/1:34 +chr11 72422969 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72453531 . A AATCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72469499 . G T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72528035 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72536272 . G A 18.8 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 72561703 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72578502 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72606775 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72630537 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72635072 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72662929 . ACT ACTTGAGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72699268 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72710905 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72725169 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72748071 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 72801871 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72816757 . A AAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72841728 . T C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72887210 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72896833 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 72916548 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72916754 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 72945341 . C T 79.6 . DP=83;AF1=0.5939;CI95=0.5,1;DP4=1,1,3,8;MQ=48;PV4=1,0.27,0.24,1 PL:DP:SP:GT:GQ 109,0,5:13:0:0/1:7 +chr11 72948079 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72977284 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72978640 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 72986205 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73000651 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 73022114 . G T 3.54 . DP=40;AF1=0.4998;CI95=0.5,0.5;DP4=12,7,0,7;MQ=50;PV4=0.0064,0.019,0.00035,1 PL:DP:SP:GT:GQ 31,0,255:26:22:0/1:34 +chr11 73023835 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73038435 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 73047717 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73075518 . A C 4.13 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=6,1,0,3;MQ=49;PV4=0.033,0.041,0.0033,1 PL:DP:SP:GT:GQ 32,0,175:10:15:0/1:35 +chr11 73101807 . G T 7.89 . DP=7;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,3,0;MQ=47;PV4=0.25,1,0.13,1 PL:DP:SP:GT:GQ 37,0,13:4:0:0/1:16 +chr11 73106615 . T A 28 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,5;MQ=48;PV4=1,0.49,0.11,1 PL:DP:SP:GT:GQ 58,0,103:14:0:0/1:61 +chr11 73111397 . ca cATAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73113141 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 73117486 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73122026 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73195759 . a aCGT 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 73231490 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 73266150 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 73281696 . T A 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 73299247 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 73309565 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 73312759 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73330338 . a aGTCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73360591 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 73374317 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73420602 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 73427740 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 73448770 . t tCCAAAAA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 73464466 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 73475371 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73496863 . atcact at 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 73531730 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 73531865 . CCCA CCCATGTCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73554784 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 73555852 . C CAGA 7.35 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 73566311 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73582892 . ACCTC A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73589787 . TGGGTAAG TGGGGTAAG 5.14 . INDEL;DP=24;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.33,1,0.037 PL:DP:SP:GT:GQ 41,0,14:4:0:0/1:17 +chr11 73601107 . CA CAGCAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73611349 . G C 46 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=21,29,5,11;MQ=49;PV4=0.56,3.7e-17,0.0033,0.098 PL:DP:SP:GT:GQ 76,0,255:66:3:0/1:79 +chr11 73633399 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73662459 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 73669452 . C T 24 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,5;MQ=49;PV4=1,0.00012,0.0067,1 PL:DP:SP:GT:GQ 54,0,166:10:0:0/1:57 +chr11 73670645 . T C 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=12,9,13,11;MQ=49;PV4=1,5.3e-23,3.9e-14,1 PL:DP:SP:GT:GQ 185,0,255:45:0:0/1:99 +chr11 73674439 . AA AATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73676058 . A G 4.13 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,2;MQ=48;PV4=1,0.37,0,1 PL:DP:SP:GT:GQ 32,0,65:5:0:0/1:35 +chr11 73681135 . G A 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=2,12,4,10;MQ=47;PV4=0.65,0.001,6.1e-11,1 PL:DP:SP:GT:GQ 215,0,255:28:2:0/1:99 +chr11 73684413 . C G 4.77 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,35:2:0:0/1:34 +chr11 73686050 . G T 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,0;MQ=48;PV4=0.33,0.037,0.0022,1 PL:DP:SP:GT:GQ 55,0,63:6:0:0/1:57 +chr11 73689104 . G A 26 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,3,4,1;MQ=50;PV4=0.21,0.028,0.051,1 PL:DP:SP:GT:GQ 56,0,107:9:7:0/1:59 +chr11 73692388 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73702235 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 73712460 . A C 38 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=6,3,7,1;MQ=49;PV4=0.58,0.034,0.00017,1 PL:DP:SP:GT:GQ 68,0,192:17:2:0/1:71 +chr11 73715542 . G A 4.13 . DP=41;AF1=0.4998;CI95=0.5,0.5;DP4=12,1,6,0;MQ=50;PV4=1,6.6e-08,0.014,0.24 PL:DP:SP:GT:GQ 32,0,255:19:0:0/1:35 +chr11 73715723 . GCCCC GCC 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73747052 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73768621 . T G 34 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=3,9,0,7;MQ=49;PV4=0.26,0.059,0.00053,0.12 PL:DP:SP:GT:GQ 64,0,196:19:6:0/1:67 +chr11 73796608 . T C 30 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 +chr11 73816671 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 73820295 . T A 31 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=48;PV4=1,0.43,0.0069,0.2 PL:DP:SP:GT:GQ 61,0,70:10:0:0/1:63 +chr11 73889895 . T A 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 73908989 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 73930544 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73933033 . A ACGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73979557 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 73990365 . A T 9.52 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=46;PV4=1,0.081,0.17,1 PL:DP:SP:GT:GQ 39,0,105:7:0:0/1:42 +chr11 73990370 . C T 6.98 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=7,0,2,0;MQ=48;PV4=1,0.012,0.00028,1 PL:DP:SP:GT:GQ 36,0,186:9:0:0/1:39 +chr11 73998300 . T A 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 74047683 . A G 91 . DP=32;AF1=1;CI95=1,1;DP4=1,0,26,0;MQ=48;PV4=1,0.12,0.25,1 PL:DP:SP:GT:GQ 124,52,0:27:0:1/1:99 +chr11 74049569 . A G 99 . DP=50;AF1=1;CI95=1,1;DP4=1,1,19,19;MQ=48;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 255,87,0:40:0:1/1:99 +chr11 74050838 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 74053547 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=1,0,9,9;MQ=46;PV4=1,0.46,0.012,1 PL:DP:SP:GT:GQ 242,29,0:19:0:1/1:99 +chr11 74057931 . C T 75.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 108,18,0:6:0:1/1:90 +chr11 74080557 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74167715 . ctc cTCTtc 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 74168468 . C T 13.2 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=7,13,0,9;MQ=49;PV4=0.066,0.034,1,1 PL:DP:SP:GT:GQ 43,0,231:29:12:0/1:46 +chr11 74180831 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 74183285 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74185646 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74187696 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74188263 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 74212034 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 74266591 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 74279656 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 74308464 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 74322439 . GT GTCTT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 74329615 . T C 42.3 . DP=46;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=50 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 +chr11 74329861 . T C 4.77 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=2,5,0,4;MQ=49;PV4=0.49,0.15,0.2,1 PL:DP:SP:GT:GQ 33,0,151:11:3:0/1:36 +chr11 74330980 . A G 68 . DP=13;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=49 PL:DP:SP:GT:GQ 101,30,0:10:0:1/1:99 +chr11 74351083 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 74380117 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74387285 . caaat c 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 74395258 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 74403340 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74404021 . C G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74407676 . C T 56 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=47;PV4=1,0.2,0.05,0.47 PL:DP:SP:GT:GQ 86,0,88:10:0:0/1:87 +chr11 74408511 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74410807 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74413885 . G T 4.13 . DP=48;AF1=0.4998;CI95=0.5,0.5;DP4=16,7,0,6;MQ=49;PV4=0.0036,0.07,2.6e-05,1 PL:DP:SP:GT:GQ 32,0,255:29:24:0/1:35 +chr11 74425964 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 74437590 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74441796 . T G 24 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 +chr11 74447638 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 74457056 . A G 3.64 . DP=21;AF1=0.5205;CI95=0.5,0.5;DP4=1,0,1,2;MQ=32;PV4=1,0.49,0.058,0.0081 PL:DP:SP:GT:GQ 31,0,11:4:0:0/1:14 +chr11 74458066 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 74475525 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74507833 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 74511246 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 74514955 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 74522153 . G C 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 74560548 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 74619577 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74627176 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74637559 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 74668790 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 74706065 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 74734875 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74782297 . C T 6.98 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,2,0;MQ=48;PV4=0.4,0.21,0.012,0.3 PL:DP:SP:GT:GQ 36,0,90:5:4:0/1:39 +chr11 74789479 . C CGACTATCGACA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 74790272 . A C 16.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=20 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr11 74800397 . ACC AAGCATTCGCTTCC 7.62 . INDEL;DP=12;AF1=0.543;CI95=0.5,1;DP4=1,0,0,1;MQ=37;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 74800829 . A G 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,20;MQ=47;PV4=1,6.4e-10,7.1e-07,1 PL:DP:SP:GT:GQ 133,0,211:33:0:0/1:99 +chr11 74821941 . tc tCGc 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 74849388 . gtgtc gTGTCAtgtc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 74862376 . CCA CCACA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.089 PL:DP:SP:GT:GQ 41,0,38:3:0:0/1:39 +chr11 74862624 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 74864636 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 74867441 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 74880737 . G T 50 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=5,3,10,0;MQ=48;PV4=0.069,0.012,0.092,0.084 PL:DP:SP:GT:GQ 80,0,171:18:12:0/1:83 +chr11 74889561 . ac aCCCCGTACGACc 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 74893337 . g gTGGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 74904362 . T C 91.2 . DP=40;AF1=0.7303;CI95=0.5,1;DP4=1,1,5,5;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 120,0,2:12:0:0/1:3 +chr11 74907582 . C T 33 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 65,9,0:3:0:1/1:63 +chr11 74909357 . t tGCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 74924818 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74929263 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74937810 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 74947131 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 74949986 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74976632 . C CTCATCCATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 74977185 . C T 5.58 . DP=5;AF1=0.5206;CI95=0.5,1;DP4=1,0,2,0;MQ=45;PV4=1,1,0.077,0.31 PL:DP:SP:GT:GQ 34,0,11:3:0:0/1:14 +chr11 74985005 . G A 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.15,0.061,1 PL:DP:SP:GT:GQ 34,0,63:4:0:0/1:37 +chr11 75029167 . cg cGAg 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 75041728 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75071521 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 75082763 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75098555 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 75103485 . t tAGATATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75112797 . G T 11.3 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,4;MQ=49;PV4=0.43,0.2,1,1 PL:DP:SP:GT:GQ 41,0,55:7:0:0/1:44 +chr11 75113329 . CCA CCACA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75152243 . C T 70.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=48 PL:DP:SP:GT:GQ 103,18,0:6:0:1/1:90 +chr11 75155514 . G T 6.98 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,3;MQ=49;PV4=1,0.093,0.34,1 PL:DP:SP:GT:GQ 36,0,91:6:0:0/1:39 +chr11 75160575 . G A 19 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr11 75160588 . C A 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,0,2;MQ=47;PV4=0.4,0.11,0.23,0.19 PL:DP:SP:GT:GQ 34,0,130:6:4:0/1:37 +chr11 75160636 . T A 23 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,4;MQ=49;PV4=0.43,0.065,0.11,1 PL:DP:SP:GT:GQ 53,0,93:7:0:0/1:56 +chr11 75160898 . TGTGAG TG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75166510 . T C 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,1;MQ=47;PV4=1,0.026,0.3,1 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr11 75232324 . ACC ACCCCTTTTCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75233397 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75235827 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75235871 . C CAG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75236817 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 75266841 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75272346 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 75277842 . A T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75277871 . C G 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,0,2;MQ=48;PV4=0.4,0.11,0.00034,1 PL:DP:SP:GT:GQ 34,0,104:5:4:0/1:37 +chr11 75289141 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75311090 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 75330197 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75339110 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75352600 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75378389 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 75401405 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 75415238 . T A 5.48 . DP=2;AF1=0.5039;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,18:2:0:0/1:21 +chr11 75416788 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75438711 . C A 8.64 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,3;MQ=48;PV4=1,0.077,0.059,1 PL:DP:SP:GT:GQ 38,0,121:8:0:0/1:41 +chr11 75439759 . AG AGAGG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75455278 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 75490814 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 75497223 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75501207 . C G 22 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.15,0.045,1 PL:DP:SP:GT:GQ 52,0,76:6:0:0/1:55 +chr11 75501337 . A T 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,4;MQ=47;PV4=1,0.11,0.1,1 PL:DP:SP:GT:GQ 48,0,104:8:0:0/1:51 +chr11 75510007 . AA AATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75511604 . T G 4.13 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,3;MQ=48;PV4=1,0.037,0.039,0.005 PL:DP:SP:GT:GQ 32,0,59:5:0:0/1:35 +chr11 75528243 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 75532184 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 75585108 . AGT AGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75610386 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75610394 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75622634 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75634706 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 75640093 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75651075 . AAAT A 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 75704388 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75704616 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 75740414 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 75770898 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75788257 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75791909 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75799147 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75840822 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 75851857 . C G 8.64 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=20,9,0,7;MQ=49;PV4=0.0014,0.00049,2.1e-07,0.31 PL:DP:SP:GT:GQ 38,0,255:36:29:0/1:41 +chr11 75868464 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75868467 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75873964 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75874815 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75879772 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 75894204 . AG AGAAGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75895536 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 75916895 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75921788 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75922459 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75928422 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75930426 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 75935525 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75955307 . AT ATGCCAGGGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr11 75974502 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 76009463 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76013880 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76039258 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 76042981 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76063276 . C CTCTGG 7.35 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 76088315 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76110913 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76134699 . G GATGTACATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76136547 . A T 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,1;MQ=47;PV4=1,0.45,0,1 PL:DP:SP:GT:GQ 33,0,74:3:0:0/1:36 +chr11 76145881 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76175313 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76183924 . A G 29 . DP=32;AF1=1;CI95=1,1;DP4=0,1,0,25;MQ=50;PV4=1,5.8e-10,0.42,1 PL:DP:SP:GT:GQ 62,55,0:26:0:1/1:99 +chr11 76227182 . G A 74 . DP=35;AF1=1;CI95=1,1;DP4=1,0,27,2;MQ=50;PV4=1,0.042,0.42,1 PL:DP:SP:GT:GQ 107,66,0:30:0:1/1:99 +chr11 76300466 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76304837 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76307941 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76341796 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76347096 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76370517 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 76370792 . A G 7.5 . DP=22;AF1=0.5939;CI95=0.5,1;DP4=1,0,0,3;MQ=49;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 36,0,5:4:0:0/1:7 +chr11 76371032 . AGCC A 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,1;MQ=50;PV4=0.25,1,1,0.2 PL:DP:SP:GT:GQ 38,0,82:4:0:0/1:41 +chr11 76372052 . A G 24.5 . DP=14;AF1=0.5718;CI95=0.5,1;DP4=1,0,2,2;MQ=50;PV4=1,0.26,0.34,1 PL:DP:SP:GT:GQ 54,0,6:5:0:0/1:8 +chr11 76372564 . T C 99 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,5;MQ=44;PV4=1,1,0,1 PL:DP:SP:GT:GQ 131,0,5:6:0:0/1:7 +chr11 76391315 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76392921 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 76404382 . AAAG A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76405965 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76419073 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76470819 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 76474264 . t tCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76491933 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76506572 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 76521357 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76544173 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76584598 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 76594009 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76637730 . C G 51 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,7;MQ=48;PV4=1,0.021,0.046,1 PL:DP:SP:GT:GQ 81,0,194:19:0:0/1:84 +chr11 76671808 . GCA G 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 76681582 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 76696092 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76705094 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 76709795 . G A 94 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=9,0,6,0;MQ=47;PV4=1,0.075,0.00013,0.49 PL:DP:SP:GT:GQ 124,0,208:15:0:0/1:99 +chr11 76731050 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76750186 . C CT 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76773713 . gaga gAGAGATaga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76780203 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 76783985 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 76785769 . G GTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76793044 . ACAT A 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 76796362 . agt aGTgt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 76824636 . ca cAGTGACTTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76827360 . A G 44 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=49 PL:DP:SP:GT:GQ 77,27,0:9:0:1/1:99 +chr11 76834712 . A G 65 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,0,8,0;MQ=48;PV4=1,4.4e-06,4.1e-05,0.39 PL:DP:SP:GT:GQ 95,0,175:15:0:0/1:98 +chr11 76860336 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76877889 . T TTCGTCC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 76884730 . G GGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76893081 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 76944049 . C T 37 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=12,3,11,0;MQ=49;PV4=0.24,3.7e-12,1.2e-06,1 PL:DP:SP:GT:GQ 67,0,255:26:6:0/1:70 +chr11 76951736 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 76979900 . C G 65.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 98,18,0:6:0:1/1:90 +chr11 76980179 . C A 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=0,5,0,3;MQ=49;PV4=1,0.023,0.037,1 PL:DP:SP:GT:GQ 32,0,80:8:0:0/1:35 +chr11 77061551 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 77092253 . T A 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77150166 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 77154333 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77204703 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 77218259 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 77228851 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77241688 . cat cATTat 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77250610 . g gTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77254896 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77284042 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77298011 . t tCGCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77301341 . G A 40 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=7,14,3,6;MQ=49;PV4=1,1.7e-06,0.0068,0.32 PL:DP:SP:GT:GQ 70,0,255:30:0:0/1:73 +chr11 77301689 . C T 3.01 . DP=38;AF1=0.4997;CI95=0.5,0.5;DP4=2,18,1,5;MQ=50;PV4=1,0.0007,0.00027,0.067 PL:DP:SP:GT:GQ 30,0,255:26:0:0/1:33 +chr11 77301883 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77316882 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 77317755 . t tTA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 77333742 . G T 4.13 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=47;PV4=0.33,0.46,0.013,1 PL:DP:SP:GT:GQ 32,0,33:4:5:0/1:32 +chr11 77335982 . C A 37.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 70,18,0:6:0:1/1:90 +chr11 77340816 . T G 3.01 . DP=15;AF1=0.4997;CI95=0.5,0.5;DP4=10,0,0,3;MQ=49;PV4=0.0035,0.016,6.9e-05,0.15 PL:DP:SP:GT:GQ 30,0,184:13:25:0/1:33 +chr11 77345384 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77359133 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 77378388 . T C 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=9,13,8,7;MQ=49;PV4=0.52,1.7e-15,4e-06,1 PL:DP:SP:GT:GQ 143,0,255:37:3:0/1:99 +chr11 77378505 . A G 99 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=6,16,4,13;MQ=47;PV4=1,0.46,7.8e-18,1 PL:DP:SP:GT:GQ 255,0,255:39:0:0/1:99 +chr11 77379507 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77389063 . CTAATT CT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,0.47,1,1 PL:DP:SP:GT:GQ 38,0,96:4:0:0/1:41 +chr11 77402323 . T G 6.02 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 77408459 . AG AGCCCCCCTCAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77409568 . T C 99 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=17,25,15,7;MQ=49;PV4=0.064,1.9e-20,6.8e-18,1 PL:DP:SP:GT:GQ 156,0,255:64:12:0/1:99 +chr11 77409643 . TT TTGTCTTGTGAACCGT 99 . INDEL;DP=35;AF1=1;CI95=1,1;DP4=0,0,13,14;MQ=50 PL:DP:SP:GT:GQ 245,81,0:27:0:1/1:99 +chr11 77420187 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77428212 . c cCAGGTGTGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77432034 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 77440727 . T G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77446051 . T C 17.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,7;MQ=24;PV4=1,9e-07,0.35,1 PL:DP:SP:GT:GQ 47,0,81:14:0:0/1:50 +chr11 77447192 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 77463350 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 77475707 . A T 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=0,12,4,0;MQ=49;PV4=0.00055,0.00037,0.056,0.44 PL:DP:SP:GT:GQ 32,0,209:16:33:0/1:35 +chr11 77485859 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77544558 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77553638 . T C 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=13,5,11,0;MQ=48;PV4=0.13,3.2e-06,2e-17,0.5 PL:DP:SP:GT:GQ 163,0,255:29:9:0/1:99 +chr11 77571646 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77583266 . G A 66 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=6,2,6,2;MQ=49;PV4=1,1.6e-06,0.036,0.34 PL:DP:SP:GT:GQ 96,0,242:16:0:0/1:99 +chr11 77597132 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77600716 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 77613688 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77614691 . C T 4.77 . DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,30:2:0:0/1:31 +chr11 77627321 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77632462 . G A 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=2,3,0,3;MQ=49;PV4=0.46,0.0013,1,1 PL:DP:SP:GT:GQ 33,0,174:8:3:0/1:36 +chr11 77654360 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77669940 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 77705182 . C CCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77705510 . G T,C 16.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 62,20,47,14,0,47:3:0:1/1:49 +chr11 77705733 . GC GCC 63.5 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,8;MQ=50;PV4=1,1,1,0.02 PL:DP:SP:GT:GQ 101,0,115:22:0:0/1:99 +chr11 77705734 . CGGGGG CGGGGGG 7.35 . INDEL;DP=29;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,8;MQ=50;PV4=1,1,1,0.024 PL:DP:SP:GT:GQ 44,0,65:22:0:0/1:47 +chr11 77736065 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77767426 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77768630 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77775466 . C G 23 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,4;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 53,0,35:5:0:0/1:38 +chr11 77783747 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 77811990 . T C 82 . DP=11;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=48 PL:DP:SP:GT:GQ 115,27,0:9:0:1/1:99 +chr11 77820670 . T C 11.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.039,0.079,0.42 PL:DP:SP:GT:GQ 41,0,78:6:0:0/1:44 +chr11 77823862 . T C 3.64 . DP=7;AF1=0.5205;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,1,0.26,0.093 PL:DP:SP:GT:GQ 31,0,11:4:0:0/1:14 +chr11 77823869 . TC TCCCAC 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,80:4:0:0/1:41 +chr11 77836103 . g gCCACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77851131 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77866071 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 77883882 . act aCTct 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 77909980 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 77915923 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77920674 . G A 4.13 . DP=26;AF1=0.4998;CI95=0.5,0.5;DP4=3,7,0,5;MQ=49;PV4=0.51,0.15,0.007,0.44 PL:DP:SP:GT:GQ 32,0,170:15:3:0/1:35 +chr11 77920999 . A G 3.02 . DP=2;AF1=0.501;CI95=0.5,0.5;DP4=1,0,0,1;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,23:2:0:0/1:25 +chr11 77925380 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 77936025 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 77936113 . AC ACAGTC 7.38 . INDEL;DP=10;AF1=0.504;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr11 77938049 . A T 56 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,6;MQ=46;PV4=0.015,0.21,0.072,0.39 PL:DP:SP:GT:GQ 86,0,119:12:18:0/1:89 +chr11 77951394 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77973694 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 77974741 . A ACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78053544 . T A 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 78068357 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 78081491 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78096812 . T TGGAGC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,103:4:0:0/1:41 +chr11 78098020 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 78106963 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78126566 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 78128099 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 78138204 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 78150901 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78169373 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78186527 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78204073 . CACAGATAC CAC 99 . INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 195,18,0:6:0:1/1:90 +chr11 78204406 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 78216272 . C T 3.8 . DP=3;AF1=0.8276;CI95=0.5,1;DP4=1,0,0,2;MQ=39;PV4=0.33,0.084,1,0.33 PL:DP:SP:GT:GQ 30,0,1:3:0:1/1:5 +chr11 78223089 . AAAGAA AAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78277122 . T C 12 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 78277277 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,3,11;MQ=48 PL:DP:SP:GT:GQ 173,42,0:14:0:1/1:99 +chr11 78279790 . T G 6.23 . DP=7;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 35,0,17:3:0:0/1:20 +chr11 78283442 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78294425 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 78342357 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 78358037 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 78367706 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78369897 . A ACGTCG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78372279 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 78381687 . T TCTTTATGTGAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 78394910 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 78395542 . ATC ATCCCTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78398161 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78407693 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78407705 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78410540 . tcag t 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 78419770 . CT CTGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78424168 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78437333 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78437432 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78453708 . T TGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78463126 . C CGAA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78470980 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78474573 . A ACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78554359 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 78576068 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78583668 . G GGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78603447 . G GTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78603924 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78610830 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 78620863 . G GGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78632599 . GAC G 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 78636164 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78637244 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 78676788 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78724266 . AC ACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78738155 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 78751248 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 78775981 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78803149 . agcc aGCCgcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78813849 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78839557 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 78887943 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 78904933 . C CGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78975835 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 79013831 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79024110 . A AGC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 79046486 . TAAA T 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 79059790 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79070685 . T TCTAATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79088464 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 79125744 . A ACG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 79152027 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 79164203 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 79170137 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 79175951 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 79241644 . cc cCGCGTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79326770 . a aGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79329433 . T G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 79336965 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 79351503 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79369879 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 79385202 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 79426232 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 79444798 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79448390 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 79492521 . A AGTCGGGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79513789 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79536416 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79541397 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 79552592 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79556187 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79616905 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79648899 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79687920 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 79698795 . T C 4.19 . DP=4;AF1=0.5127;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 32,0,13:3:0:0/1:16 +chr11 79720155 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 79731733 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 79752425 . G GAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79779040 . C CTAAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79781037 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79801866 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 79853354 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79869696 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 79870486 . A ACG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79894890 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79937596 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 79970664 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79976489 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 80005528 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 80007172 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 80011863 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80023222 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80066006 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 80105017 . GGA GGATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80134455 . TACAGA T 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80141934 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 80152786 . T TTC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 80163291 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 80192427 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 80197664 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 80221540 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 80223610 . ATA ATAGTA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 80237880 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 80275498 . at aTAGTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80296721 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80298701 . C G 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 80322351 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 80328298 . c cAGTAGTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80366038 . C CCGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80383847 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80385135 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 80398762 . C T,G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 48,21,30,18,0,30:2:0:1/1:41 +chr11 80399104 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80439283 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 80450565 . T A 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 80456681 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 80470140 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80494084 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80526977 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 80565294 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 80602228 . CT CTCCTGGTAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80603045 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 80641044 . ac aCATc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80647925 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 80665612 . A AGTGTG 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 80684304 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80752669 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80764816 . A ATCGGACCCGTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80780206 . t tCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80811442 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 80818347 . A ACGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80843059 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80851262 . G GCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80942366 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81003491 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81042689 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81078869 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 81080512 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81131742 . G GAATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 81165129 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81180580 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81204652 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81214791 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81235566 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81260434 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 81366269 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81366352 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81368229 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 81380584 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81415701 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 81446057 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81451366 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 81534008 . ta tATCCCTCCGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 81542699 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 81583722 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 81616727 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81638749 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 81640048 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81670392 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 81681159 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81703992 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81723736 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81724348 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81732089 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 81807317 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81816256 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81818493 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 81837412 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81890264 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81895417 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 81898250 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 81944728 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 81949290 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 81957167 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81964149 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 81985753 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 82051191 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 82058582 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82067581 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 82074085 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 82090087 . tggccacc t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82090428 . t tGACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82126336 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 82141893 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 82146934 . T TCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82149693 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 82171518 . ct cTAAGGGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82196454 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 82221799 . G GTA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 82224418 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 82235946 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82239110 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 82253459 . C CGCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82303930 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82321953 . CC CCAGATGAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82331088 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 82339838 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 82394736 . A G 4.77 . DP=2;AF1=0.5007;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,25:2:0:0/1:27 +chr11 82399806 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82420083 . C G 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 82424839 . A ATG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 82433112 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 82444556 . C T 4.77 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,0,3;MQ=50;PV4=0.4,0.099,0.19,0.22 PL:DP:SP:GT:GQ 33,0,60:6:4:0/1:36 +chr11 82464407 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 82484587 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82488744 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82511662 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 82546915 . G C,T 13.6 . DP=9;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,4;MQ=46;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 65,22,36,29,0,48:5:0:0/1:10 +chr11 82570064 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82583661 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 82583668 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 82641157 . A G 7.8 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.00084,0,0.061 PL:DP:SP:GT:GQ 37,0,108:5:0:0/1:40 +chr11 82644904 . G A 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=18,2,10,7;MQ=49;PV4=0.052,3.3e-07,0.00025,1 PL:DP:SP:GT:GQ 189,0,255:37:13:0/1:99 +chr11 82648906 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 82663618 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82704197 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82729584 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 82730583 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 82736935 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82744056 . G GAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82774125 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 82799473 . AAT AATGGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82808324 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82843553 . C A 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 82863829 . a aGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82868349 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 82878833 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 82905670 . G T 4.13 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,3,0;MQ=46;PV4=1,1,0.065,1 PL:DP:SP:GT:GQ 32,0,42:6:0:0/1:35 +chr11 82917222 . T G 6.2 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.17,0.037,1 PL:DP:SP:GT:GQ 35,0,51:7:0:0/1:38 +chr11 82921538 . C T 14.7 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 47,12,0:4:0:1/1:72 +chr11 82924221 . G T 5.46 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=6,0,1,2;MQ=49;PV4=0.083,0.0048,0.0046,1 PL:DP:SP:GT:GQ 34,0,156:9:11:0/1:37 +chr11 82924358 . T C 18.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=39 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 82928487 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 82932598 . ttgt tTGtgt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 82947606 . A G 6.2 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,43:2:0:0/1:37 +chr11 82955266 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82976874 . G C 16.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=50;PV4=1,1.4e-05,0,0.4 PL:DP:SP:GT:GQ 46,0,181:13:0:0/1:49 +chr11 82987021 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 83025757 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83030582 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 83032086 . a aTGTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 83044310 . t tAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 83046302 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83074939 . T C 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 83098407 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 83136810 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 83180522 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83184822 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 83200228 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83208724 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 83213713 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83213723 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83214648 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83242456 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83244173 . T G 18.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=38 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 83261455 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83287491 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83308529 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83315469 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83373230 . AAT AATCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 83389906 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83392064 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 83421576 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83427322 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83434414 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83479583 . TTA TTATA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 83479956 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83489379 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 83501343 . A G 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0.029,0,1 PL:DP:SP:GT:GQ 34,0,83:3:0:0/1:37 +chr11 83560788 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83608248 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83624115 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83625304 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83630067 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83633784 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83649818 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83656452 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 83671895 . T TTAAGGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 83673805 . A C 6.02 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 83681015 . TA TAAGGCCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 83691458 . G C 80.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:DP:SP:GT:GQ 113,15,0:5:0:1/1:75 +chr11 83703453 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83704681 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83737295 . A T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83747797 . AATAG A 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 83766558 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83773693 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 83791775 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83826550 . AG AGGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 83840805 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83855082 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83858782 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83901506 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83916889 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 83929901 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83938587 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83953410 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 83985247 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83992996 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83996593 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 84023537 . a aCTTTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84025845 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 84082341 . A C 3.07 . DP=2;AF1=0.5126;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,13:2:0:0/1:16 +chr11 84124725 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 84173002 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 84194970 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84231798 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84239109 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 84257129 . G A 17.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,3;MQ=49;PV4=1,0.22,0.1,0.29 PL:DP:SP:GT:GQ 47,0,83:6:0:0/1:50 +chr11 84274234 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 84294935 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 84309057 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 84430224 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84448528 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 84471638 . CACT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84506485 . c cTTTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84523838 . GA GAGGTCTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84543628 . C CAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84576320 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 84577448 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84589412 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 84612394 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 84637918 . t tAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84645520 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 84646337 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 84656005 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 84743230 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 84769892 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84783740 . a aGATGATTTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84784329 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 84801032 . A AGACACAAGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84815069 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84830248 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84845037 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84857320 . g gCCTCT 7.62 . INDEL;DP=3;AF1=0.543;CI95=0.5,1;DP4=0,1,0,1;MQ=37;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 84872358 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 84875918 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 84885329 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 84923376 . T A 11.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 84977885 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84979190 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84980646 . tgtaag tg 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 85131396 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 85170983 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85235149 . g gTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85241119 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85251696 . t tGCATGC 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 85294772 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85313453 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85347228 . T C 8.64 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,1,0,4;MQ=46;PV4=0.048,0.043,0.0085,0.41 PL:DP:SP:GT:GQ 38,0,140:9:13:0/1:41 +chr11 85347306 . A G 12.3 . DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,1,0.079,1 PL:DP:SP:GT:GQ 42,0,34:6:0:0/1:36 +chr11 85360000 . a aTT 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 85367289 . C T 56 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=48;PV4=1,0.011,0.068,1 PL:DP:SP:GT:GQ 86,0,96:8:0:0/1:89 +chr11 85371776 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85373746 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85384199 . C CTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85386796 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85394821 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85403388 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85403432 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85418590 . GAACA G 6.55 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,13;MQ=50;PV4=1,1.2e-05,1,1 PL:DP:SP:GT:GQ 43,0,155:20:0:0/1:46 +chr11 85418591 . AACAGACA AACA 83.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 121,0,145:9:0:0/1:99 +chr11 85425925 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85428627 . G C 23 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,17,0,10;MQ=50;PV4=1,1.1e-09,0.099,0.061 PL:DP:SP:GT:GQ 53,0,237:27:0:0/1:56 +chr11 85435730 . C T 99 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=19,10,9,4;MQ=48;PV4=1,0.012,5.1e-21,1 PL:DP:SP:GT:GQ 227,0,255:42:0:0/1:99 +chr11 85436352 . G A 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=7,12,6,18;MQ=46;PV4=0.51,0.026,2.4e-13,1 PL:DP:SP:GT:GQ 255,0,255:43:3:0/1:99 +chr11 85436500 . T C 20 . DP=65;AF1=0.5;CI95=0.5,0.5;DP4=15,20,6,3;MQ=49;PV4=0.27,1.8e-11,5.2e-06,1 PL:DP:SP:GT:GQ 50,0,255:44:6:0/1:53 +chr11 85436699 . A G 99 . DP=46;AF1=1;CI95=1,1;DP4=0,1,7,10;MQ=49;PV4=1,0.31,0.38,1 PL:DP:SP:GT:GQ 166,28,0:18:0:1/1:99 +chr11 85447611 . T C 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=1,12,1,6;MQ=48;PV4=1,0.0084,1.7e-07,1 PL:DP:SP:GT:GQ 139,0,255:20:0:0/1:99 +chr11 85448591 . G C 7.8 . DP=14;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,0.35,0.21,1 PL:DP:SP:GT:GQ 37,0,27:6:0:0/1:30 +chr11 85454557 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85463759 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85491207 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 85496107 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85497688 . G GTCCTTCAGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85503352 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85505298 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 85515294 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85519058 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 85535362 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 85547490 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85593756 . C A 4.13 . DP=25;AF1=0.4998;CI95=0.5,0.5;DP4=0,12,0,4;MQ=49;PV4=1,0.00053,0.019,1 PL:DP:SP:GT:GQ 32,0,214:16:0:0/1:35 +chr11 85610106 . TA TAGTCTGATAAA 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85644220 . T A 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 85646097 . CG CGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85675510 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 85703855 . TAT TATACTAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85753527 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85785452 . gtg gTGTGAtg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85797588 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85802327 . ga gATCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85826594 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85833807 . c cGG 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 85842767 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85854150 . TGA TGACGAAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85870064 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85870067 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85894631 . a aGCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85906933 . GC GCCC 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,0.16 PL:DP:SP:GT:GQ 38,0,92:4:0:0/1:41 +chr11 85910756 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85919859 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85920938 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 85935020 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 85951493 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85953498 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85954831 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 85977117 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,3;MQ=45 PL:DP:SP:GT:GQ 216,30,0:10:0:1/1:99 +chr11 85989378 . T A 5.46 . DP=14;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,2,0;MQ=46;PV4=1,0.16,0.23,1 PL:DP:SP:GT:GQ 34,0,27:3:0:0/1:29 +chr11 85989684 . GGCTG GG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 85994151 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86003702 . g gGGGCAAC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 86036168 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86086388 . C T 11.3 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.02,0,0.27 PL:DP:SP:GT:GQ 41,0,41:3:0:0/1:41 +chr11 86097059 . A C 7.8 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,0.27,0.16,1 PL:DP:SP:GT:GQ 37,0,52:6:0:0/1:40 +chr11 86097064 . A T 19.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=48;PV4=1,0.2,0.16,0.066 PL:DP:SP:GT:GQ 49,0,85:9:0:0/1:52 +chr11 86110322 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86123467 . G A 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=3,11,12,13;MQ=48;PV4=0.17,4.9e-06,0.00079,0.43 PL:DP:SP:GT:GQ 224,0,255:39:8:0/1:99 +chr11 86125848 . CGA CGAGA 5.09 . INDEL;DP=10;AF1=0.501;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.061 PL:DP:SP:GT:GQ 41,0,24:3:0:0/1:27 +chr11 86135189 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86157318 . C A 30 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=17,2,8,0;MQ=49;PV4=1,0.088,1.6e-07,1 PL:DP:SP:GT:GQ 60,0,222:27:0:0/1:63 +chr11 86160146 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 86161388 . C G 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=6,10,3,11;MQ=49;PV4=0.44,2.5e-09,0.00011,0.27 PL:DP:SP:GT:GQ 130,0,255:30:4:0/1:99 +chr11 86172078 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 86174129 . G C 40.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=43 PL:DP:SP:GT:GQ 72,6,0:2:0:1/1:49 +chr11 86198539 . TTTC TCCAATGGACTTC,TTTCGGTTC 7.35 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 52,11,44,8,0,41:2:0:1/1:41 +chr11 86209327 . CA CATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86214593 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 86216974 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86235204 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86243822 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 86265389 . CTC CTCAGAAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86280034 . t tTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86283598 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86307719 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 86320161 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 86320165 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86335805 . T TGGA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 86340596 . A C 3.54 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,35:2:0:0/1:33 +chr11 86346383 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86351180 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86359639 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86376877 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86424214 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 86453137 . CTC CTCAGATCGTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86466122 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 86528204 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 86529130 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86532422 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86533235 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86562043 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 86568992 . C A 20.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr11 86577180 . ACA ACATGGTGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86610994 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 86611766 . caga cAGAaga 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 86631747 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86645449 . c cTTTT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 86646377 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 86662797 . T G 6.98 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,3;MQ=48;PV4=1,0.18,0.1,0.1 PL:DP:SP:GT:GQ 36,0,71:6:0:0/1:39 +chr11 86662868 . G A 6.98 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=4,3,4,0;MQ=50;PV4=0.24,0.038,0.16,0.37 PL:DP:SP:GT:GQ 36,0,182:11:6:0/1:39 +chr11 86691005 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 86720249 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86730675 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86736503 . A G 3.01 . DP=7;AF1=0.4997;CI95=0.5,0.5;DP4=1,3,2,0;MQ=48;PV4=0.4,0.019,0.035,0.38 PL:DP:SP:GT:GQ 30,0,145:6:4:0/1:33 +chr11 86777178 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86806071 . C G 26.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 +chr11 86806279 . CAA CA 18.3 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr11 86807104 . C A 24.1 . DP=6;AF1=0.5129;CI95=0.5,0.5;DP4=0,1,1,3;MQ=49;PV4=1,0.11,0.25,1 PL:DP:SP:GT:GQ 54,0,13:5:0:0/1:16 +chr11 86807157 . A ATATGG 3.96 . INDEL;DP=4;AF1=0.5336;CI95=0.5,1;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,9:2:0:0/1:12 +chr11 86854469 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 86858553 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 86865146 . a aTGGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86961039 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 86965007 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86970175 . T C 8.64 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,0.25,0.21,0.43 PL:DP:SP:GT:GQ 38,0,54:4:0:0/1:41 +chr11 86999351 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87020504 . A C 10.4 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 40,0,52:7:0:0/1:43 +chr11 87032215 . T C 13.9 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 87036285 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87059812 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 87065853 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87075558 . CA CACAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87146830 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87151348 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 87151719 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87192077 . C T 7.8 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,42:2:0:0/1:39 +chr11 87192254 . G GGGAAAA 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87199260 . a aAAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87206766 . GA GATGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87209305 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87233000 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87240081 . C T 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 87267117 . CT CTTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87274345 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 87274366 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 87277161 . G GCTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87313801 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 87416513 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87428825 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87455638 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 87458726 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87468325 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 87487383 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 87551027 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87555745 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87560425 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 87571913 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87576403 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87607199 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 87611540 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 87745272 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87758501 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87794956 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 87806285 . c cGT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87816142 . tc tCAAACACGGc 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 87828765 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87856208 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 87858697 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87882936 . GTCAC GTCACCACTCAC 15.6 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,7,2,0;MQ=50;PV4=0.028,0.13,0.026,1 PL:DP:SP:GT:GQ 53,0,183:9:16:0/1:56 +chr11 87887050 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87893921 . cc cCATTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87906013 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87916432 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87981772 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 87995407 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88010998 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88011213 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88020714 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 88022331 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 88027732 . TTCTAT TT 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,46:3:0:0/1:40 +chr11 88045583 . A G 99 . DP=34;AF1=1;CI95=1,1;DP4=1,1,15,13;MQ=48;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 255,48,0:30:0:1/1:99 +chr11 88045815 . CTTT CTTTT 12.5 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 88045818 . T TG 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 88063115 . c cGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88067501 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 88093114 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 88105196 . tttagcatt ttt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88105312 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88135408 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88141270 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88142353 . A G 19.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,10,1,5;MQ=42;PV4=0.37,6.9e-05,0.13,0.21 PL:DP:SP:GT:GQ 49,0,180:16:0:0/1:52 +chr11 88144025 . cttccttttccttttc cttccttttc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88251639 . AA AATTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88273472 . T TGTGTACAAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88294006 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88295214 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88322895 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 88330322 . A C 20 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,0.14,0.019,0.15 PL:DP:SP:GT:GQ 50,0,53:8:0:0/1:51 +chr11 88338165 . G A 40 . DP=34;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=47 PL:DP:SP:GT:GQ 72,9,0:3:0:1/1:63 +chr11 88392016 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 88425860 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 88442817 . C T 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 88451977 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88466860 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 88483894 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 88501104 . t tCTCACACA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 88603484 . GAA GAATTTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88614821 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 88616797 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 88638124 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88667321 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 88680454 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88700525 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88775116 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88780565 . T TTA 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.075 PL:DP:SP:GT:GQ 38,0,109:4:0:0/1:41 +chr11 88795201 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 88801015 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 88815456 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 88870174 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 88885981 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 88943130 . g gTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88954094 . G GGGTCAACTC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 88955860 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 89063351 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89070598 . T C 6.98 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr11 89073269 . G A 6.98 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.22,0.17,1 PL:DP:SP:GT:GQ 36,0,45:4:0:0/1:38 +chr11 89073358 . A G 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,1;MQ=41;PV4=1,0,1,1 PL:DP:SP:GT:GQ 31,0,64:3:0:0/1:34 +chr11 89088210 . TT TTGT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 89124541 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 89133211 . C G 3.02 . DP=2;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,22:2:0:0/1:24 +chr11 89133256 . C T 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0.48,0,1 PL:DP:SP:GT:GQ 34,0,77:3:0:0/1:37 +chr11 89133449 . C T 8.65 . DP=7;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.13,0.41,1 PL:DP:SP:GT:GQ 38,0,32:3:0:0/1:34 +chr11 89169022 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89173977 . T A 3.15 . DP=5;AF1=0.5333;CI95=0.5,1;DP4=0,1,0,2;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 30,0,9:3:0:0/1:12 +chr11 89223297 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89250158 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89251436 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89265264 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 89302833 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89305296 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89340263 . T TTTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89346122 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89375297 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89384205 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 89395288 . A G 7.97 . DP=2;AF1=0.5263;CI95=0.5,1;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,10:2:0:0/1:13 +chr11 89409227 . G GCA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 89431890 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 89449174 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 89484043 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89502007 . Ggagagagagagagagagagagagagaga Ggagagagagagagagagagagagaga 3.25 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=34;PV4=1,0.43,0.41,1 PL:DP:SP:GT:GQ 38,0,74:5:0:0/1:41 +chr11 89507723 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 89518939 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 89531540 . C T 25 . DP=5;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,2;MQ=46;PV4=1,0.051,0.18,0.3 PL:DP:SP:GT:GQ 55,0,30:4:0:0/1:33 +chr11 89534841 . A G,C 6.02 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 49,19,35,13,0,35:3:0:1/1:49 +chr11 89552260 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89583858 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89588116 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 89588809 . T TAGAAAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89590900 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89622365 . TG TGCACAG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.14 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 89645144 . TTGCA T 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 89676371 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89680157 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89681744 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89693663 . TG TGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89715029 . TC TCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89727082 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 89786347 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 89829385 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89860170 . T A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 89861634 . g gTGCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89862761 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89868064 . T A 37 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,6;MQ=49;PV4=1,0.068,0.12,0.32 PL:DP:SP:GT:GQ 67,0,42:8:0:0/1:45 +chr11 89892347 . A T 3.56 . DP=5;AF1=0.503;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.12,0.17,1 PL:DP:SP:GT:GQ 31,0,19:3:0:0/1:22 +chr11 89896807 . C G 4.13 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=45;PV4=1,0.4,0.17,1 PL:DP:SP:GT:GQ 32,0,38:4:0:0/1:34 +chr11 89896815 . T G 20.8 . DP=12;AF1=0.95;CI95=0.5,1;DP4=0,1,0,5;MQ=49;PV4=1,1,1,0.42 PL:DP:SP:GT:GQ 49,0,0:6:0:1/1:10 +chr11 89896817 . T G 4.8 . DP=12;AF1=0.5049;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,1,0.074,1 PL:DP:SP:GT:GQ 33,0,17:5:0:0/1:20 +chr11 89902216 . T TTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89927013 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89927358 . g gCTGCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89962327 . ag aGGGTCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 90016648 . A C 7.8 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,2,3,0;MQ=48;PV4=0.1,0.01,0.25,1 PL:DP:SP:GT:GQ 37,0,71:5:10:0/1:40 +chr11 90062968 . TC TCGAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 90127096 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90152780 . a aATG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 90183735 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 90199487 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 90207088 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 90340851 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 90377423 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 90390950 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 90420134 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90428375 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90428768 . a aCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 90534941 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 90557083 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 90572065 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90578250 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 90581384 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 90588378 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90648205 . A ACTGATG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 90681435 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 90691580 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 90721388 . a aGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 90722057 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 90735855 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90741438 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 90746475 . gcac g 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 90765391 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 90812041 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 90829622 . t tGTGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 90831921 . c cTCATAACCCACAAG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 90832027 . T TTTC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 90849279 . C G 28.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr11 90849496 . T C 11.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr11 90922713 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 90970693 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 91013711 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91071278 . aa aAGGTAGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91076860 . AA AAGGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91085181 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91188777 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 91206687 . gaa gAAACGGAaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91208877 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 91237010 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91252306 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 91264608 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91264612 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91285620 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 91321957 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91346317 . A G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 91356404 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 91388372 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 91420613 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91430788 . G GTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91437126 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91445093 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 91498456 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91586985 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 91593484 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 91599551 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 91608738 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91615400 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91615514 . TT TTCCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91672743 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 91690271 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 91782498 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 91796380 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 91878718 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 91893856 . TC TCCACACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91894257 . CCT CCTGAGGTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91909058 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91911006 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 91923510 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91926758 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 91932527 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 91961185 . AACTT A 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 91965829 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 92028976 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 92034539 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92038969 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92041582 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 92042406 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 92064400 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 92080449 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 92085280 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92103124 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92112854 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92146118 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92153064 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92153350 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 92174044 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92181227 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 92216326 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 92226819 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92242941 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92246881 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92288922 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92311079 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 92312989 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 92325870 . ataactg a 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 92344252 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92345755 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 92351203 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 92370502 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92394135 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92398300 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92398691 . C CAAGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 92404448 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 92487319 . t tAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 92496947 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92531138 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92555065 . A G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92576822 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92577031 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92580886 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92610332 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92649930 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92659521 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92664425 . A AGGATTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 92680065 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 92704527 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 92704829 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92717588 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 92739494 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92771646 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 92806994 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92821529 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92828018 . g gAGGTGACGTA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 92830868 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 92832727 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 92843079 . c cGG 5.08 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 92849774 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92865769 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92888621 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 92903319 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92912370 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92916151 . T TAA 7.35 . INDEL;DP=4;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,26:2:0:0/1:29 +chr11 92928271 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 92932662 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 92946618 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92952040 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 93001414 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93009192 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 93026706 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93067603 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93083192 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93084155 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93088512 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 93126167 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 93212254 . C T 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=44 PL:DP:SP:GT:GQ 174,36,0:12:0:1/1:99 +chr11 93215128 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 93221813 . cggg cg 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 93273562 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 93280609 . a aAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93292925 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93292935 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93298785 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 93343318 . C A 8.64 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,0;MQ=49;PV4=0.1,0.12,0.079,1 PL:DP:SP:GT:GQ 38,0,72:6:10:0/1:41 +chr11 93351328 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93370619 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 93371382 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 93378106 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93383564 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93396639 . t tCTGGCGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93403405 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93404405 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93439700 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93447949 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 93464087 . A G 6.4 . DP=5;AF1=0.5335;CI95=0.5,1;DP4=1,0,2,0;MQ=47;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 35,0,9:3:0:0/1:12 +chr11 93465238 . T G 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,1;MQ=45;PV4=1,0.052,0.26,0.089 PL:DP:SP:GT:GQ 36,0,41:3:0:0/1:38 +chr11 93465394 . A ATG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.024 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 93466791 . T C 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,3;MQ=48;PV4=0.14,0.085,0.038,1 PL:DP:SP:GT:GQ 48,0,40:7:8:0/1:42 +chr11 93469531 . A G 28 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.019,0.24,1 PL:DP:SP:GT:GQ 58,0,58:6:0:0/1:58 +chr11 93494714 . T G 5.46 . DP=38;AF1=0.4999;CI95=0.5,0.5;DP4=12,2,0,5;MQ=50;PV4=0.0018,0.022,2.1e-05,0.32 PL:DP:SP:GT:GQ 34,0,218:19:27:0/1:37 +chr11 93499648 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 93516018 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93527095 . T TGGGGAC 5.1 . INDEL;DP=9;AF1=0.5031;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,19:3:0:0/1:22 +chr11 93527219 . T C 59.1 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 92,18,0:6:0:1/1:90 +chr11 93527239 . T A 31 . DP=18;AF1=0.502;CI95=0.5,0.5;DP4=0,1,0,4;MQ=47;PV4=1,0.053,0.19,1 PL:DP:SP:GT:GQ 61,0,21:5:0:0/1:24 +chr11 93530682 . A T 20.1 . DP=19;AF1=0.502;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.051,1 PL:DP:SP:GT:GQ 50,0,21:5:0:0/1:24 +chr11 93530848 . A G 13.2 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=3,6,4,0;MQ=49;PV4=0.07,0.052,1.7e-07,1 PL:DP:SP:GT:GQ 43,0,207:13:12:0/1:46 +chr11 93535035 . A C 13.3 . DP=6;AF1=0.508;CI95=0.5,0.5;DP4=0,1,3,0;MQ=48;PV4=0.25,0.17,1,0.21 PL:DP:SP:GT:GQ 43,0,15:4:0:0/1:18 +chr11 93539022 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 93540706 . A C 41 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=7,0,0,5;MQ=47;PV4=0.0013,0.0084,5.1e-05,1 PL:DP:SP:GT:GQ 71,0,170:12:29:0/1:74 +chr11 93540914 . T G 11.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr11 93544697 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93557297 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93557302 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93569643 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93583751 . G T 23.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 55,6,0:2:0:1/1:49 +chr11 93623035 . C CATA 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93623054 . T A 27.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 93628713 . TCAACA TCA 3.25 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,44:2:0:0/1:40 +chr11 93634834 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93668292 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93674731 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 93698187 . AT ATTAGTCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93703590 . C CGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93717719 . t tAG 11.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 93751506 . A G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93765053 . C CCCGCCAACA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 93811521 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93848194 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93862493 . A C 49.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=49 PL:DP:SP:GT:GQ 82,18,0:6:0:1/1:90 +chr11 93886838 . G C 33.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 93913458 . T C 54.4 . DP=35;AF1=1;CI95=0.5,1;DP4=0,1,0,8;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 87,13,0:9:0:1/1:65 +chr11 93913677 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 93921929 . T C 5.46 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93962706 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 94000893 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94018091 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94091125 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 94098961 . a aCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94136484 . AG AGGAAGCAACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94138278 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94170484 . T C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 94177856 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94182437 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 94194214 . G T 4.77 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.27,0.0013,0.071 PL:DP:SP:GT:GQ 33,0,57:5:0:0/1:36 +chr11 94197260 . A G 3.01 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.024,1.2e-05,0.25 PL:DP:SP:GT:GQ 30,0,163:10:0:0/1:33 +chr11 94201069 . T G 3.07 . DP=6;AF1=0.5126;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.33,1,0.17 PL:DP:SP:GT:GQ 30,0,13:3:0:0/1:16 +chr11 94204888 . A C 8.64 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,3;MQ=49;PV4=0.1,0.004,0,1 PL:DP:SP:GT:GQ 38,0,68:5:10:0/1:41 +chr11 94212048 . C T 5.46 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=2,8,0,3;MQ=49;PV4=1,0.0097,0.00065,1 PL:DP:SP:GT:GQ 34,0,255:13:0:0/1:37 +chr11 94219120 . C G 7.8 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,1;MQ=47;PV4=0.4,0.033,0.11,0.48 PL:DP:SP:GT:GQ 37,0,105:5:0:0/1:40 +chr11 94225875 . CT CTGAGAAAGACGT 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 94225920 . C T 49 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=15,2,2,4;MQ=49;PV4=0.021,0.00057,2.3e-05,1 PL:DP:SP:GT:GQ 79,0,255:23:17:0/1:82 +chr11 94228680 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 94284136 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 94300671 . G T 3.54 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,2,0;MQ=48;PV4=0.4,0.0029,0.002,1 PL:DP:SP:GT:GQ 31,0,82:5:4:0/1:34 +chr11 94308319 . C T 6.02 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 94310420 . T A 3.41 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 94316039 . C G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94326627 . G A 54 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,6,0;MQ=48;PV4=1,0.00011,0.00073,0.46 PL:DP:SP:GT:GQ 84,0,93:9:0:0/1:86 +chr11 94339403 . T TCC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 94340852 . T C 3.6 . DP=12;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,1,1,0.026 PL:DP:SP:GT:GQ 31,0,13:3:0:0/1:16 +chr11 94340853 . T C 22 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.063,0.48,0.35 PL:DP:SP:GT:GQ 52,0,55:7:0:0/1:53 +chr11 94342137 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94349610 . TA TAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94351066 . T TAAGA 5.08 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 94353242 . A G 5.46 . DP=32;AF1=0.4999;CI95=0.5,0.5;DP4=15,2,0,6;MQ=49;PV4=0.00028,0.0039,0.0034,1 PL:DP:SP:GT:GQ 34,0,255:23:36:0/1:37 +chr11 94354019 . T C 11.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.0022,0.14,0.28 PL:DP:SP:GT:GQ 41,0,77:5:0:0/1:44 +chr11 94363634 . t tCAGGGTGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94378708 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 94420690 . a aTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94425398 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94442375 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94458818 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 94476852 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 94499954 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 94519521 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94561921 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 94562403 . tg tGAACCAGAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94597739 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94600348 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 94659285 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94689779 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94697764 . CCA CCAGGGAGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94708495 . T A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 94714056 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94717162 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 94731414 . TC TCGGTAGC 3.25 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,108:4:0:0/1:41 +chr11 94733639 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 94759055 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94771882 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 94775712 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94808381 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94835236 . t tGGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94836209 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 94838948 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 94845282 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94851686 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 94854575 . t tGGGAGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94861847 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 94878460 . TA TAGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94884841 . T TAC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 94917522 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94926397 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 94928098 . CA CAGTGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94933078 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 94993803 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 95089279 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 95103700 . TTT TTTGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95167568 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95191810 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 95191843 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95251183 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 95287973 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 95292395 . Tttcttctt TTTCttcttctt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95297519 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95301867 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 95319735 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 95346694 . c cTCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95370150 . cctgt c 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95374554 . C G 43.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 75,6,0:2:0:1/1:49 +chr11 95423374 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 95462946 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 95482165 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 95498464 . ag aGACGGAGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95509037 . C G 3.54 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,2,0;MQ=49;PV4=1,0.025,6.4e-06,1 PL:DP:SP:GT:GQ 31,0,150:7:0:0/1:34 +chr11 95519195 . A T 29 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,0.042,0.00051,1 PL:DP:SP:GT:GQ 59,0,146:8:0:0/1:62 +chr11 95521648 . A G 20 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=48;PV4=1,0.042,0.00029,1 PL:DP:SP:GT:GQ 50,0,157:9:0:0/1:53 +chr11 95525787 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 95532771 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 95546829 . T G 18.5 . DP=11;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,3;MQ=48;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 48,0,7:4:0:0/1:10 +chr11 95550875 . A AAAGGTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95552672 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 95555630 . A C 4.26 . DP=9;AF1=0.5262;CI95=0.5,1;DP4=1,0,2,0;MQ=47;PV4=1,1,0.38,0.23 PL:DP:SP:GT:GQ 32,0,10:3:0:0/1:13 +chr11 95555635 . A C 19.5 . DP=7;AF1=0.5554;CI95=0.5,1;DP4=1,0,3,0;MQ=46;PV4=1,1,0.13,0.093 PL:DP:SP:GT:GQ 49,0,7:4:0:0/1:10 +chr11 95555864 . A ATGCCTTTAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95562327 . G A 3.01 . DP=24;AF1=0.4997;CI95=0.5,0.5;DP4=15,1,7,0;MQ=50;PV4=1,1.9e-10,1,0.42 PL:DP:SP:GT:GQ 30,0,255:23:0:0/1:33 +chr11 95641180 . a aGCTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95646048 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 95677019 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 95683550 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 95705756 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 95781868 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95785901 . ACA ACACTCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95813020 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 95816127 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 95826554 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 95827497 . G A 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 95829177 . A AAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 95838458 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 95846274 . A ATTTTGTTACG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 95848291 . GTT GTTCACCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95867472 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95892281 . T TAATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95904498 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 95927601 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 95973764 . TCT TCTCTACAATACCT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 95973779 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 96004367 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 96008721 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 96073935 . T TCTGTGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 96085191 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 96092376 . C T 71 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=47;PV4=1,0.019,0.0058,1 PL:DP:SP:GT:GQ 101,0,107:7:0:0/1:99 +chr11 96106649 . TA TATCA 7.44 . INDEL;DP=4;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,13:2:0:0/1:16 +chr11 96123734 . TG TGG 99 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=7,0,7,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 138,0,109:14:0:0/1:99 +chr11 96125435 . CTTT CT 18.5 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=50;PV4=1,0.19,1,0.056 PL:DP:SP:GT:GQ 56,0,41:3:0:0/1:44 +chr11 96126824 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 96177649 . T G 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 96178256 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 96180738 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 96185133 . GTAAT GT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 96185490 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 96207027 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 96242523 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 96439101 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 96496399 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 96523186 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 96527887 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 96545227 . a aGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 96669743 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 96675736 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 96681976 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 96752273 . aaag aAAGACTaag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 96808128 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 96830418 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 96866072 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 96876939 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 96904596 . TT TTCAGTAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97025600 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97087433 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97096729 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97125615 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97125909 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97130552 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97137923 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 97156987 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97175306 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 97183824 . GTCTT G 9.05 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 97201908 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 97210023 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97220218 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97236190 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97249718 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 97279071 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 97280900 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97290413 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97330870 . T TGCGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97341246 . T TATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97349617 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97359339 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97373522 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97460649 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 97481851 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97523247 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 97549851 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 97602760 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97613898 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 97626041 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 97649508 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97650667 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97664368 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97676787 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97687338 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97687576 . C G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97689764 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 97692883 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97701623 . ct cTCGATGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97751924 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 97757745 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97806147 . C CGCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97813716 . a aGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97816012 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 97875040 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 97898728 . A G 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 97942150 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97964811 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 98016057 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98031128 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98031130 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98095256 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98120779 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98141662 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98184600 . tt tTGAGTCGt 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 98239415 . ac aCGATc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 98241466 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98250444 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 98254864 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98292052 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98295403 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 98300613 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98303045 . at aTACGTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 98303786 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 98322702 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98342958 . c cCAA 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 98356457 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 98383829 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 98389028 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 98426948 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98436183 . C CA 44.7 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=26 PL:DP:SP:GT:GQ 85,15,0:5:0:1/1:75 +chr11 98436527 . A C 38 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=43 PL:DP:SP:GT:GQ 70,9,0:3:0:1/1:63 +chr11 98479904 . a aAT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 98493055 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 98494093 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98495066 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 98522874 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98551363 . tcagca tca 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 98586534 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 98599345 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98676249 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 98676872 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98757861 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98812358 . C CGACTCAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 98827129 . A AGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 98858766 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 98888560 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 98889795 . tcct tCCTTGCCcct 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 98900756 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98969613 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 98982364 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 99002956 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 99042929 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99051964 . tg tGCTCGCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99076074 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 99088699 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 99176446 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 99198444 . CT CTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99221394 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 99221404 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 99234246 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 99281246 . GT GTCTCAGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99309283 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 99313549 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 99374146 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 99413726 . A AACTAAACCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99478847 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99526214 . C CGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99532367 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 99533278 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 99534087 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99565134 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 99580730 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 99585946 . T TGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99602395 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 99613669 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 99619169 . cag cAGTTCGGGag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99620497 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 99628539 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 99658620 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99715541 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99721246 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 99726016 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 99761887 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99838530 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 99848381 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99904881 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 99939951 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 99947939 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 99952378 . TG TGGGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 99969198 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 99969913 . c cTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99979496 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100001122 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100039510 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100045207 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100058340 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 100063075 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 100064525 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 100075147 . a aCAGAGTGTAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100077365 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100086680 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100179531 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100194357 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 100216337 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 100225651 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100228171 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100250200 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100263327 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 100377454 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 100422701 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 100423623 . C CGT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 100459077 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 100502297 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100515763 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 100530741 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100541448 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 100585283 . TTTTG TTTTGATTTG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100611475 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 100619041 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100647699 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100647704 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100669586 . AAGC A 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 100692401 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 100701460 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100723802 . T TGTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100739393 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100743467 . TTC TTCATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100747674 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100780335 . g gCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100863354 . C A 91 . DP=61;AF1=0.5013;CI95=0.5,0.5;DP4=1,1,4,6;MQ=49;PV4=1,0.029,0.15,1 PL:DP:SP:GT:GQ 121,0,23:12:0:0/1:26 +chr11 100863496 . TGT TGCACCCGTGT 7.35 . INDEL;DP=8;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,34:2:0:0/1:37 +chr11 100920902 . A ACGGTGT 6.56 . INDEL;DP=2;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,22:2:0:0/1:25 +chr11 100923191 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 100933143 . T TAGTCAC 7.35 . INDEL;DP=5;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 100970034 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 100985747 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 100985751 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100994950 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100995707 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 101005442 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 101014593 . TTA TTAGAGCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101016818 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 101058890 . T TCTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101064861 . A AGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101090478 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 101090487 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 101117074 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 101120586 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101129037 . TC TCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 101148468 . a aAAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101154269 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101176749 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101196692 . t tATAGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101205196 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 101219286 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 101232653 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 101237510 . tt tTGAAAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101310323 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101323856 . TAAGAAG TAAG 99 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,6,1,5;MQ=50;PV4=1,0.14,1,0.26 PL:DP:SP:GT:GQ 200,0,161:12:0:0/1:99 +chr11 101325076 . A C 3.04 . DP=2;AF1=0.5061;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,16:2:0:0/1:19 +chr11 101326648 . aa aATAGAGGCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101341418 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101344177 . G A 18.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=50;PV4=1,1.1e-09,0.097,0.23 PL:DP:SP:GT:GQ 48,0,132:9:0:0/1:51 +chr11 101347093 . A G 38 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,1;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 68,0,98:6:0:0/1:71 +chr11 101359750 . G A 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=10,6,5,7;MQ=48;PV4=0.45,2.4e-05,5.9e-07,1 PL:DP:SP:GT:GQ 184,0,255:28:4:0/1:99 +chr11 101363617 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101368926 . TC TCACGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101369947 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 101386444 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 101464721 . T C 26 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.25,0,1 PL:DP:SP:GT:GQ 56,0,67:4:0:0/1:59 +chr11 101519416 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101622649 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 101623144 . g gTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101703087 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 101737389 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101771248 . G A 99 . DP=29;AF1=1;CI95=1,1;DP4=1,0,12,12;MQ=44;PV4=1,0.0026,5.9e-07,0.033 PL:DP:SP:GT:GQ 255,25,0:25:0:1/1:99 +chr11 101778195 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101786916 . T TGGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101795573 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101818917 . T TCTGTCTCCTC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 101833950 . C T 10.4 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,4,0,3;MQ=49;PV4=0.5,1,1.3e-05,0.18 PL:DP:SP:GT:GQ 40,0,97:9:3:0/1:43 +chr11 101834076 . A G 85 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=17,2,0,11;MQ=48;PV4=1.4e-06,1.2e-05,6.3e-08,0.33 PL:DP:SP:GT:GQ 115,0,255:30:58:0/1:99 +chr11 101843069 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 101857758 . G A 32.5 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 65,12,0:4:0:1/1:72 +chr11 101868319 . C G 45.1 . DP=13;AF1=0.505;CI95=0.5,0.5;DP4=2,0,4,0;MQ=45;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 75,0,17:6:0:0/1:20 +chr11 101879489 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 101954065 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 101960224 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101981834 . CA CAAACCACCAA 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,84:4:0:0/1:41 +chr11 101981836 . T C 6.2 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,3,0;MQ=49;PV4=1,0.2,1,1 PL:DP:SP:GT:GQ 35,0,65:6:0:0/1:38 +chr11 101985610 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 102088976 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 102166546 . GA GATA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr11 102177053 . AA AACGGAACA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.45 PL:DP:SP:GT:GQ 38,0,92:4:0:0/1:41 +chr11 102187304 . C A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102195121 . A C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 102195276 . T C 13.2 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,3,1,3;MQ=49;PV4=0.55,0.15,0.0036,1 PL:DP:SP:GT:GQ 43,0,141:11:3:0/1:46 +chr11 102196176 . TTG TTGTG 7.62 . INDEL;DP=15;AF1=0.543;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 102196177 . TGG TGTTCCGG 12.7 . INDEL;DP=14;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 102196178 . G GTTACACCT 3.81 . INDEL;DP=14;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 102196181 . CTAAAATTAAT CCGTTAAAATTAAT 5.09 . INDEL;DP=12;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,22:3:0:0/1:25 +chr11 102201848 . G A 71 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=1,1,7,2;MQ=49;PV4=0.49,0.011,0.43,0.3 PL:DP:SP:GT:GQ 101,0,41:11:3:0/1:44 +chr11 102207851 . G A 44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 76,9,0:3:0:1/1:63 +chr11 102221742 . GA GAGCA 7.35 . INDEL;DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 102272277 . G T 63 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=15,9,5,3;MQ=49;PV4=1,7e-06,4.1e-06,1 PL:DP:SP:GT:GQ 93,0,255:32:0:0/1:96 +chr11 102296839 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102300899 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102336846 . A T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102348854 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 102359768 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102365830 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102367543 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 102382609 . t tGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 102388274 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102422534 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102422544 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 102452250 . AAAG AAAGCTTTACCAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 102460034 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 102464101 . AG AGTG 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.077 PL:DP:SP:GT:GQ 41,0,69:3:0:0/1:44 +chr11 102477395 . A G 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=20,12,6,8;MQ=49;PV4=0.33,7.1e-06,4e-16,1 PL:DP:SP:GT:GQ 174,0,255:46:5:0/1:99 +chr11 102489389 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102489402 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 102490966 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 102493774 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102504259 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 102516326 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 102544162 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102546595 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 102559606 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 102567057 . A T 3.01 . DP=22;AF1=0.4997;CI95=0.5,0.5;DP4=7,2,4,0;MQ=50;PV4=1,0.014,0.07,1 PL:DP:SP:GT:GQ 30,0,196:13:0:0/1:33 +chr11 102567626 . C G 4.77 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=0,8,0,4;MQ=50;PV4=1,1.3e-08,0.014,1 PL:DP:SP:GT:GQ 33,0,200:12:0:0/1:36 +chr11 102573396 . C G 54.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 87,15,0:5:0:1/1:75 +chr11 102573451 . T C 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,0,13,0;MQ=46;PV4=1,0.00027,0.00038,0.091 PL:DP:SP:GT:GQ 154,0,141:19:0:0/1:99 +chr11 102575152 . A T 13.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr11 102584023 . T A 29 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr11 102584464 . AGG AG 31.5 . INDEL;DP=8;AF1=0.5064;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 69,0,16:4:0:0/1:19 +chr11 102584607 . T C 5.46 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.003,0.16,1 PL:DP:SP:GT:GQ 34,0,168:11:0:0/1:37 +chr11 102592049 . Ttgtgtgtgtgtgtgtgtgtgt TTGTGtgtgtgtgtgtgtgtgtgtgt 43 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=28 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 +chr11 102593248 . T C 3.6 . DP=58;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,1,1;MQ=50;PV4=1,0.33,0.33,1 PL:DP:SP:GT:GQ 31,0,13:3:0:0/1:16 +chr11 102595492 . G A 34.5 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,6,0;MQ=49;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 66,7,0:7:0:1/1:57 +chr11 102600198 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102604705 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 102645932 . A C 4.13 . DP=9;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,0,2;MQ=49;PV4=0.1,0.12,0.073,1 PL:DP:SP:GT:GQ 32,0,94:5:10:0/1:35 +chr11 102647310 . T G 95 . DP=24;AF1=0.5002;CI95=0.5,0.5;DP4=3,0,17,0;MQ=47;PV4=1,0.079,0.091,1 PL:DP:SP:GT:GQ 125,0,32:20:0:0/1:35 +chr11 102654833 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 102660388 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 102665032 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 102665813 . A C 16.2 . DP=12;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,3,0;MQ=47;PV4=1,0.32,1,0.49 PL:DP:SP:GT:GQ 46,0,13:4:0:0/1:16 +chr11 102668790 . ACAGCAGCAGCAGCAG ACAGCAGCAGCAG 6.55 . INDEL;DP=26;AF1=0.5;CI95=0.5,0.5;DP4=5,12,1,1;MQ=50;PV4=1,0.18,1,1 PL:DP:SP:GT:GQ 43,0,255:19:0:0/1:46 +chr11 102709425 . A G 14.2 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=3,9,0,6;MQ=50;PV4=0.51,9.7e-08,0.018,1 PL:DP:SP:GT:GQ 44,0,255:18:3:0/1:47 +chr11 102709459 . TTC T 6.55 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,2;MQ=50;PV4=1,0.089,1,1 PL:DP:SP:GT:GQ 43,0,148:7:0:0/1:46 +chr11 102709461 . CAGAG CAG 88.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=50;PV4=1,0.26,0.2,1 PL:DP:SP:GT:GQ 126,0,115:9:0:0/1:99 +chr11 102710029 . A G 4.14 . DP=7;AF1=0.5024;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,1,0.21,0.35 PL:DP:SP:GT:GQ 32,0,20:4:0:0/1:23 +chr11 102713046 . C T 50 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,9;MQ=49;PV4=1,2.1e-06,0.01,1 PL:DP:SP:GT:GQ 80,0,171:16:0:0/1:83 +chr11 102751518 . A C 5.46 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=47;PV4=1,0.17,0.13,0.37 PL:DP:SP:GT:GQ 34,0,76:7:0:0/1:37 +chr11 102751686 . T C 19.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=49;PV4=1,0.18,0.3,1 PL:DP:SP:GT:GQ 49,0,61:7:0:0/1:52 +chr11 102791210 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102820965 . G A 99 . DP=61;AF1=0.5;CI95=0.5,0.5;DP4=10,10,14,18;MQ=48;PV4=0.78,5.8e-12,2.8e-11,0.078 PL:DP:SP:GT:GQ 255,0,255:52:1:0/1:99 +chr11 102822733 . C T 28.2 . DP=24;AF1=0.5263;CI95=0.5,1;DP4=0,1,4,0;MQ=48;PV4=0.2,0.37,0.26,1 PL:DP:SP:GT:GQ 58,0,10:5:0:0/1:13 +chr11 102824810 . T A 4.77 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,43:2:0:0/1:36 +chr11 102841670 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 102846818 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 102937178 . T C 6.2 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=8,2,4,0;MQ=49;PV4=1,0.018,0.0068,1 PL:DP:SP:GT:GQ 35,0,243:14:0:0/1:38 +chr11 102946342 . ct cTTCGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 102962426 . C G 6.21 . DP=3;AF1=0.5024;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0,0.11,1 PL:DP:SP:GT:GQ 35,0,20:3:0:0/1:23 +chr11 102994337 . T TTGTGCACTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103003625 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 103012034 . t tCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103065057 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103096249 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103101359 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 103211146 . TA TACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103218063 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 103330165 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 103369864 . aagaa aAGAAGCACagaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103387319 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 103389521 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103405193 . agt aGTCCgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103407061 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103457620 . catta c 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 103473245 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103489601 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103497216 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 103504650 . C G 3.01 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,31:2:0:0/1:30 +chr11 103560810 . at aTTt 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 103580068 . T TAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103589202 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 103597897 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 103602221 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 103683649 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 103703907 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 103704331 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103741659 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103767948 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 103818344 . G C 46 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,7,0;MQ=49;PV4=1,1.5e-06,0.075,1 PL:DP:SP:GT:GQ 76,0,165:13:0:0/1:79 +chr11 103820849 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103830580 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 103835471 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103842082 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103875337 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 103877383 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 103883207 . C T 3.41 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 103932394 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103964105 . A AGCTCCCGAAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103975516 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104012525 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 104030781 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 104117340 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104146751 . CCTC CCTCGCTTTTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104156817 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 104200269 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 104214397 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 104232202 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 104238132 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104239558 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 104295883 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104295888 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104303951 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 104311937 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 104335046 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 104350763 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 104359141 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104375662 . AG AGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104388744 . A AAG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 104428654 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104482548 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 104484514 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 104488049 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104517540 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104522375 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104522849 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104556379 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104588593 . ga gACTCCATa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104608406 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104680458 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104703791 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 104748029 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 104763288 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 104774183 . A G 5.48 . DP=5;AF1=0.5031;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0.061,0.2,1 PL:DP:SP:GT:GQ 34,0,19:3:0:0/1:22 +chr11 104780559 . C G 40.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 73,15,0:5:0:1/1:75 +chr11 104819327 . T C 10.8 . DP=22;AF1=0.5554;CI95=0.5,1;DP4=1,0,4,0;MQ=50;PV4=1,0.056,1,1 PL:DP:SP:GT:GQ 40,0,7:5:0:0/1:10 +chr11 104869708 . G C 52 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,10,1,5;MQ=48;PV4=1,0.00099,0.0022,0.29 PL:DP:SP:GT:GQ 82,0,255:19:0:0/1:85 +chr11 104872981 . C T 26.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 59,12,0:4:0:1/1:72 +chr11 104876710 . TT TTGTTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104877717 . C G 10.4 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.17,0.11,1 PL:DP:SP:GT:GQ 40,0,87:5:0:0/1:43 +chr11 104877927 . T C 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=5,5,4,5;MQ=48;PV4=1,0.022,3.4e-05,1 PL:DP:SP:GT:GQ 151,0,252:19:0:0/1:99 +chr11 104897326 . T TAC 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 104902498 . A ACACTCTGAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104902848 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104917422 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 104918110 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104963849 . C T 93 . DP=15;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,0,9;MQ=46;PV4=1,1,0.0058,1 PL:DP:SP:GT:GQ 123,0,29:11:0:0/1:32 +chr11 104972190 . C T 29 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,12,0,6;MQ=48;PV4=1,0.17,0.0035,1 PL:DP:SP:GT:GQ 59,0,172:19:0:0/1:62 +chr11 104986626 . a aCGTCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105049278 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 105162564 . aac aACCCCac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105250156 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 105264924 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 105289394 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 105299505 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 105313833 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 105351769 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 105357932 . c cCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105367152 . AAG AAGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105370710 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 105377906 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 105412217 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 105438635 . tttac t 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 105470139 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 105487913 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 105490625 . TA TACAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105495863 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 105524093 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 105539474 . t tACGGTG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105566284 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 105576365 . a aAGACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105583540 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 105588179 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 105602945 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 105623784 . T C 36 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=10,2,4,1;MQ=48;PV4=1,0.017,0.00013,0.23 PL:DP:SP:GT:GQ 66,0,237:17:0:0/1:69 +chr11 105641720 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 105649425 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 105666343 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 105684855 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 105702594 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 105804572 . TT TTTCAGT 5.08 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 41,0,56:3:0:0/1:44 +chr11 105804740 . TCCA TCCAACCCA 7.36 . INDEL;DP=6;AF1=0.502;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,21:2:0:0/1:24 +chr11 105814532 . tT tTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105841205 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 105849593 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 105860478 . ttgct tt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105893520 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 105899207 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 105939451 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 105948410 . A C 14.2 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,0.1,0.0019,0.43 PL:DP:SP:GT:GQ 44,0,137:9:0:0/1:47 +chr11 105950499 . G GTGCA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr11 106039161 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 106054012 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 106084600 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 106141603 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 106162850 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106165359 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106170412 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 106191710 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 106246848 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 106251655 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106258429 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 106271943 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 106280213 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 106283916 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 106317077 . G GACCGAGAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106340933 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 106366277 . a aTGTTCAC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106396764 . tt tTCCTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106451671 . a aCCACC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 106517034 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 106521845 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 106523386 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 106571145 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 106583774 . a aCACACGCGTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106598086 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 106602013 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 106638369 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 106701423 . atg aTGATCtg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106819208 . a aCTAT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 106828296 . t tACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106836592 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 106843739 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 106844084 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 106856686 . C CGCAA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,66:3:0:0/1:44 +chr11 106875472 . G T 3.41 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 106878004 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106878056 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106895918 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 106895987 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 106930951 . T TTTACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106971908 . aa aAAAGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106997922 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107004826 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 107007470 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 107022338 . t tGTTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107029354 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107049981 . A ACCATACACAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107082414 . C CGAGAAATGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107177858 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 107259997 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107274696 . A AGGG 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,1;MQ=50;PV4=0.25,1,1,0.34 PL:DP:SP:GT:GQ 38,0,93:4:0:0/1:41 +chr11 107275035 . C A 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 107275143 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,1,10,19;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 207,71,0:30:0:1/1:99 +chr11 107312401 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107321476 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 107341528 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 107377181 . aa aACa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107380904 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107382947 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 107393955 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 107403202 . TAGAG TAG 42.5 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,3;MQ=50;PV4=1,1.3e-09,1,1 PL:DP:SP:GT:GQ 80,0,223:14:0:0/1:83 +chr11 107422503 . TG TGGCCAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 107441550 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107448891 . GAGA G 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 107449997 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107484667 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 107524081 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107530225 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 107578440 . G GTGCTCACGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107578721 . C G 67 . DP=20;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=50 PL:DP:SP:GT:GQ 100,54,0:18:0:1/1:99 +chr11 107601343 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107607312 . T C 26.3 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 59,15,0:5:0:1/1:75 +chr11 107641822 . AG AGACAACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107654089 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 107673629 . GAGAAG GAG 42.5 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,0.036,1,0.39 PL:DP:SP:GT:GQ 80,0,80:4:0:0/1:80 +chr11 107673710 . G A 41 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=11,0,11,0;MQ=49;PV4=1,1.1e-09,1.8e-07,1 PL:DP:SP:GT:GQ 71,0,212:22:0:0/1:74 +chr11 107673925 . C T 7.8 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,7;MQ=50;PV4=1,4e-12,1,1 PL:DP:SP:GT:GQ 37,0,206:16:0:0/1:40 +chr11 107676260 . C T 62 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,10,0,8;MQ=49;PV4=1,0.0014,0.0092,1 PL:DP:SP:GT:GQ 92,0,219:19:0:0/1:95 +chr11 107677399 . CAAA CAAAA 72.7 . INDEL;DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 113,15,0:5:0:1/1:75 +chr11 107677400 . AA AACA 7.35 . INDEL;DP=10;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 107677656 . T C 51 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,3;MQ=48;PV4=1,0.0039,0,1 PL:DP:SP:GT:GQ 81,0,190:10:0:0/1:84 +chr11 107679566 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 107693451 . G GTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107695161 . t tATGAAACACG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 107719222 . a aTTTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107750412 . tt tTGAGAGCATCCGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107768307 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107768956 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107798370 . AAGA AAGAGA 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 107817110 . G C 3.02 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107824922 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107853670 . gg gGTCAGTAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107904646 . C T 7.59 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 107905946 . gt gTCCt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 107917087 . A G 4.61 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 107923354 . A C 5.47 . DP=6;AF1=0.5012;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0.048,0.068 PL:DP:SP:GT:GQ 34,0,23:4:0:0/1:26 +chr11 108014661 . GTA GTAGTATA 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 108018121 . ACC ACCC 99 . INDEL;DP=49;AF1=0.5;CI95=0.5,0.5;DP4=14,14,4,11;MQ=50;PV4=0.2,1,1,1 PL:DP:SP:GT:GQ 207,0,255:43:7:0/1:99 +chr11 108042558 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 108047153 . C T 19.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.068,1,0.18 PL:DP:SP:GT:GQ 49,0,72:7:0:0/1:52 +chr11 108059000 . T C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 108068307 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 108093208 . A T 5.46 . DP=41;AF1=0.4999;CI95=0.5,0.5;DP4=14,5,2,3;MQ=49;PV4=0.29,2e-06,0.00045,1 PL:DP:SP:GT:GQ 34,0,255:24:5:0/1:37 +chr11 108098459 . TAA T 99 . INDEL;DP=19;AF1=0.5;CI95=0.5,0.5;DP4=5,5,2,4;MQ=50;PV4=0.63,0.0057,1,0.42 PL:DP:SP:GT:GQ 143,0,255:16:2:0/1:99 +chr11 108158296 . T G 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 108183167 . A G 88.2 . DP=25;AF1=1;CI95=0.5,1;DP4=1,0,8,2;MQ=49;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 121,17,0:11:0:1/1:85 +chr11 108183250 . T TCTAAGTGA 5.08 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,68:3:0:0/1:44 +chr11 108183253 . GA GGTCATTAA 3.25 . INDEL;DP=13;AF1=0.5002;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,31:4:0:0/1:33 +chr11 108190712 . T C 5.46 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,5,0;MQ=49;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 34,0,50:10:0:0/1:37 +chr11 108199995 . A G 13.2 . DP=11;AF1=0.5025;CI95=0.5,0.5;DP4=0,2,0,3;MQ=45;PV4=1,1,0.047,1 PL:DP:SP:GT:GQ 43,0,20:5:0:0/1:23 +chr11 108206531 . A C 22 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 108223235 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 108224658 . A C 9.52 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.1,0.0081,1 PL:DP:SP:GT:GQ 39,0,81:6:0:0/1:42 +chr11 108225483 . C T 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,2,0;MQ=49;PV4=1,0.0011,0.026,1 PL:DP:SP:GT:GQ 30,0,189:9:0:0/1:33 +chr11 108225629 . T G 9.31 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 108225661 . A G 99 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,6;MQ=46;PV4=1,0.0001,0.00011,1 PL:DP:SP:GT:GQ 139,0,151:11:0:0/1:99 +chr11 108253737 . A T 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,4,1;MQ=47;PV4=1,0.27,0.27,0.024 PL:DP:SP:GT:GQ 32,0,59:10:0:0/1:35 +chr11 108275971 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 108276091 . C G 67 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,6,0;MQ=47;PV4=1,3.1e-05,0.084,1 PL:DP:SP:GT:GQ 97,0,148:11:0:0/1:99 +chr11 108303718 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108312830 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 108345515 . G GA 99 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=22,2,9,2;MQ=50;PV4=0.57,1,1,1 PL:DP:SP:GT:GQ 188,0,209:35:2:0/1:99 +chr11 108352160 . C T 63.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 96,15,0:5:0:1/1:75 +chr11 108361385 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 108380335 . T C 87 . DP=52;AF1=1;CI95=1,1;DP4=1,1,1,25;MQ=49;PV4=0.14,0.47,0.061,1 PL:DP:SP:GT:GQ 120,40,0:28:9:1/1:99 +chr11 108384207 . C T 8.64 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=6,15,1,6;MQ=49;PV4=0.64,0.00039,1.9e-07,1 PL:DP:SP:GT:GQ 38,0,255:28:2:0/1:41 +chr11 108384712 . CAAA CACCGCTGAAA 5.08 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.13 PL:DP:SP:GT:GQ 41,0,39:3:0:0/1:40 +chr11 108409784 . T A 96 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=8,18,6,13;MQ=50;PV4=1,1.5e-24,0.029,0.17 PL:DP:SP:GT:GQ 126,0,255:45:0:0/1:99 +chr11 108412574 . T A 4.13 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,0.38,1,0.085 PL:DP:SP:GT:GQ 32,0,32:6:0:0/1:32 +chr11 108420487 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108429510 . GTTT GTTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 108483800 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 108512302 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 108523188 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 108547920 . A G 4.77 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=11,3,6,0;MQ=49;PV4=0.52,0.021,0.18,1 PL:DP:SP:GT:GQ 33,0,205:20:3:0/1:36 +chr11 108548002 . T A 56 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,9;MQ=48;PV4=1,0.062,0.00044,0.27 PL:DP:SP:GT:GQ 86,0,138:18:0:0/1:89 +chr11 108557283 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 108560262 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108578172 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 108586283 . A ACATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 108594656 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 108645966 . GAA GAAGTGAGGGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 108653137 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 108664535 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 108685527 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 108696328 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 108707279 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108711918 . T G 5.46 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=42;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,37:2:0:0/1:35 +chr11 108711979 . A G 24.1 . DP=7;AF1=0.505;CI95=0.5,0.5;DP4=1,0,4,0;MQ=49;PV4=1,0.041,0.25,1 PL:DP:SP:GT:GQ 54,0,17:5:0:0/1:20 +chr11 108722851 . C G 10.2 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 108744092 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 108755547 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 108756638 . T TTG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 108761767 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 108801924 . C CTA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 108805299 . t tTCTTTGG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 108814451 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 108855677 . A T 3.06 . DP=2;AF1=0.5099;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,14:2:0:0/1:17 +chr11 108860957 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108935532 . t tTG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 108948519 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 108980689 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 109043843 . A ATAGAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109065707 . t tCACCTGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109107720 . AT ATTGTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109123217 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 109125541 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109284906 . G GTCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109304792 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 109312119 . AA AATTTATTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109338204 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109376245 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 109390091 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 109401890 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 109437486 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 109482609 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 109493817 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 109518935 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109521678 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109557461 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 109563050 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 109573463 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 109575261 . T A 3.6 . DP=2;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,13:2:0:0/1:16 +chr11 109579145 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 109601277 . TAGAA TAGAAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109622357 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 109640514 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 109685097 . G T 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 109685395 . a aTCTCTTCTCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109687628 . A ACG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 109688240 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109710644 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 109732677 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 109758738 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 109780897 . t tGTCTTACAACAC 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 109823354 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 109835529 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 109836387 . a aGCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109901290 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 109916770 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 109920383 . C T 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 109920437 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109927798 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 109956056 . C CCGGGGCTCTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109994735 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 110036057 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 110048881 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110058326 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 110106746 . C T 33.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=50 PL:DP:SP:GT:GQ 66,21,0:7:0:1/1:84 +chr11 110108215 . A T 3.02 . DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0,1 PL:DP:SP:GT:GQ 30,0,26:4:0:0/1:28 +chr11 110128570 . T TTGTGG 7.38 . INDEL;DP=4;AF1=0.504;CI95=0.5,0.5;DP4=1,0,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr11 110131076 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 110134704 . C G 4.18 . DP=14;AF1=0.51;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0.33,0.33,0.32 PL:DP:SP:GT:GQ 32,0,14:3:0:0/1:17 +chr11 110138427 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 110179510 . C CAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110201647 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110230515 . t tCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110236202 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 110236782 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 110305087 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110332826 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110333030 . AATATATATA AATATATATATA 76.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=9,0,5,0;MQ=50;PV4=1,0.42,0.095,0.033 PL:DP:SP:GT:GQ 114,0,180:14:0:0/1:99 +chr11 110346100 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110351251 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 110353593 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110361302 . c cCGTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110380705 . G GCGCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110390706 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110394319 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110413638 . g gATGTCTCTA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 110438376 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110453009 . G A 34 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 66,9,0:3:0:1/1:63 +chr11 110453845 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110492712 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 110500329 . CTTAT C 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 110504927 . G GCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110506408 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 110515705 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110516821 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110587543 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110587851 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 110643124 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110646246 . cagt c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 110647016 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110659577 . A T 25.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=16 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr11 110664120 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110675387 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110678322 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 110699999 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 110723786 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110734480 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 110756036 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110768869 . ATTT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110781665 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110789951 . G GTA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 110974293 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110976504 . TG TGGCG 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 111007101 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111018128 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 111024450 . G GGA 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 111036163 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111044287 . T TTCTAAGCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111078884 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 111100220 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111145399 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 111152211 . A G 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.27,0.053,1 PL:DP:SP:GT:GQ 33,0,49:4:0:0/1:36 +chr11 111156176 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111168437 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 111180977 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 111181530 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 111221601 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111225273 . CC CCTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111234041 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 111245071 . G GCGCGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111253530 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 111265582 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111270439 . T TAA 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 111270574 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 111293790 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111293795 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111295847 . T C 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 111314465 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111314997 . g gTCTAACTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111316610 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111338478 . T C 5.48 . DP=8;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.05,0,1 PL:DP:SP:GT:GQ 34,0,20:3:0:0/1:23 +chr11 111339478 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111360612 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 111374294 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 111383033 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111384182 . T C 5.46 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=3,3,3,0;MQ=49;PV4=0.46,0.14,0.13,1 PL:DP:SP:GT:GQ 34,0,160:9:3:0/1:37 +chr11 111420364 . A G 99 . DP=52;AF1=1;CI95=1,1;DP4=1,0,16,30;MQ=44;PV4=0.36,1,0.00041,1 PL:DP:SP:GT:GQ 255,121,0:47:0:1/1:99 +chr11 111428425 . G GGA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,80:3:0:0/1:44 +chr11 111487106 . C G,A 99 . DP=29;AF1=1;CI95=1,1;DP4=0,0,3,21;MQ=48 PL:DP:SP:GT:GQ 207,69,204,0,53,204:24:0:1/1:99 +chr11 111495760 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 111508741 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 111523098 . A ACAGTAT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111556547 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 111573684 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111591199 . A G 22 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=3,1,4,0;MQ=48;PV4=1,0.25,0.013,1 PL:DP:SP:GT:GQ 52,0,79:8:0:0/1:55 +chr11 111600236 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 111609094 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111645561 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111651778 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 111665622 . T TCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111715232 . A C 13.2 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=48;PV4=1,0.41,0.017,1 PL:DP:SP:GT:GQ 43,0,44:7:0:0/1:43 +chr11 111724133 . C T 49 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=5,4,7,2;MQ=49;PV4=0.62,2.3e-06,0.016,1 PL:DP:SP:GT:GQ 79,0,255:18:2:0/1:82 +chr11 111724320 . A C 4.77 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=50;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 33,0,33:6:0:0/1:33 +chr11 111729048 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111754591 . A G 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.059,0.22,1 PL:DP:SP:GT:GQ 32,0,51:6:0:0/1:35 +chr11 111779473 . T C 17.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=4,1,5,0;MQ=49;PV4=1,0.0014,0.24,1 PL:DP:SP:GT:GQ 47,0,143:10:0:0/1:50 +chr11 111784388 . C A 21 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,3,0,4;MQ=49;PV4=0.44,0.16,0.016,0.4 PL:DP:SP:GT:GQ 51,0,117:9:4:0/1:54 +chr11 111795085 . C G 22 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,8,0,5;MQ=48;PV4=0.52,0.0067,0.48,1 PL:DP:SP:GT:GQ 52,0,228:15:3:0/1:55 +chr11 111815817 . a aCTCGACGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111827990 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111829957 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111832138 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 111845043 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 111894756 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 111907927 . AAC AACAC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,75:3:0:0/1:44 +chr11 111908162 . T C 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=7,11,3,14;MQ=49;PV4=0.26,2.7e-10,0.017,1 PL:DP:SP:GT:GQ 148,0,255:35:6:0/1:99 +chr11 111916000 . TA T 5.09 . INDEL;DP=16;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,2;MQ=50;PV4=1,0.13,1,1 PL:DP:SP:GT:GQ 41,0,22:3:0:0/1:25 +chr11 111916001 . AGG AG 99 . INDEL;DP=13;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=50 PL:DP:SP:GT:GQ 154,36,0:12:0:1/1:99 +chr11 111920681 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111933088 . A G 22 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,2.1e-06,0,1 PL:DP:SP:GT:GQ 52,0,138:6:0:0/1:55 +chr11 111955257 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111959541 . A C 6.99 . DP=8;AF1=0.5012;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,1,0.025,1 PL:DP:SP:GT:GQ 36,0,23:4:0:0/1:26 +chr11 111959715 . C T,A 49.3 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=49 PL:DP:SP:GT:GQ 84,17,74,2,0,74:6:0:1/1:75 +chr11 111973529 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111982916 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111992698 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112017444 . T TCGAAGTAGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 112017552 . c cCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112033576 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112033586 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112038920 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 112041128 . TTTTGTCCTGTT TTT 99 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 153,12,0:4:0:1/1:72 +chr11 112050950 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112064431 . T C 37 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,1,0,1 PL:DP:SP:GT:GQ 67,0,58:4:0:0/1:60 +chr11 112065367 . A C 38.8 . DP=15;AF1=0.95;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 67,0,0:6:0:1/1:10 +chr11 112065483 . A C 69.5 . DP=35;AF1=1;CI95=0.5,1;DP4=1,0,1,8;MQ=49;PV4=0.2,1,0.23,1 PL:DP:SP:GT:GQ 102,12,0:10:0:1/1:72 +chr11 112072930 . G A 88.5 . DP=15;AF1=1;CI95=0.5,1;DP4=1,0,3,7;MQ=49;PV4=0.36,0.0045,0.012,1 PL:DP:SP:GT:GQ 119,4,0:11:0:1/1:45 +chr11 112081297 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112087101 . T A 75 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 108,33,0:11:0:1/1:99 +chr11 112088499 . A C 74 . DP=9;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=49 PL:DP:SP:GT:GQ 107,24,0:8:0:1/1:96 +chr11 112098494 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 112099410 . T C 24 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=49;PV4=1,5.5e-06,0.054,1 PL:DP:SP:GT:GQ 54,0,169:11:0:0/1:57 +chr11 112132155 . gt gTAACt 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112138161 . C T 35 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37 PL:DP:SP:GT:GQ 67,9,0:3:0:1/1:63 +chr11 112145996 . A AGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112164118 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 112172959 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 112183909 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112185291 . t tCANNNNN 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112205656 . GAG GAGTAG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 112240591 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112270344 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 112303990 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112317008 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 112318374 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112319876 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112336085 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 112336956 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 112348758 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112409551 . T A 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 112415250 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 112435112 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 112458232 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 112462610 . TG TGGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112465898 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 112477498 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112488587 . C CTAGTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112501801 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 112515201 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 112533739 . A ACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112588749 . T A 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 112589937 . GAC GACCAC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 112594906 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 112600123 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 112621739 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 112656753 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112656772 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 112677905 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112679923 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112683851 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 112695651 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 112701080 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 112709321 . T TAA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 112720136 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 112727502 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 112807581 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 112811211 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 112899533 . T TGGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112904645 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 112912548 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112933972 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 112944708 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 112967619 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113000808 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113001063 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113017608 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113020011 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 113027525 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113054194 . A C 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 113103165 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113115707 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 113170073 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113200558 . A G 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=8,0,9,0;MQ=47;PV4=1,0.00017,5e-06,1 PL:DP:SP:GT:GQ 160,0,189:17:0:0/1:99 +chr11 113220914 . C G 6.98 . DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 36,0,28:5:0:0/1:30 +chr11 113226161 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113229032 . ggagt g 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 113230869 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 113234466 . G A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113235864 . A G 17.1 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.17,0.16,0.32 PL:DP:SP:GT:GQ 47,0,70:4:0:0/1:50 +chr11 113236144 . ttct tTCTAGtct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113236210 . A AACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113237717 . A G 5.51 . DP=2;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,1;MQ=32;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,15:2:0:0/1:18 +chr11 113251337 . ag aGGGTCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113252675 . T TCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 113254930 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113263633 . G C,A 20.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=45 PL:DP:SP:GT:GQ 61,15,51,9,0,51:3:0:1/1:49 +chr11 113279116 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113281397 . C T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 113283477 . A G 81 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,11,1,8;MQ=49;PV4=1,1.2e-06,3.7e-07,1 PL:DP:SP:GT:GQ 111,0,249:21:0:0/1:99 +chr11 113294369 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 113314678 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 113343638 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113364392 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113366583 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113367868 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113388075 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113404661 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 113416299 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 113421183 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113476808 . t tAAACGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113570044 . T C 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 113604425 . T G 14.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,0,0,4;MQ=49;PV4=0.029,0.00021,0.057,0.017 PL:DP:SP:GT:GQ 44,0,112:8:15:0/1:47 +chr11 113618968 . G C 56.5 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=47 PL:DP:SP:GT:GQ 89,12,0:4:0:1/1:72 +chr11 113668418 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 113670052 . T A 86.1 . DP=65;AF1=1;CI95=0.5,1;DP4=0,1,11,2;MQ=49;PV4=0.21,0.24,0.23,1 PL:DP:SP:GT:GQ 119,18,0:14:0:1/1:90 +chr11 113674619 . A G 3.01 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,1,0.037,0.41 PL:DP:SP:GT:GQ 30,0,42:5:0:0/1:33 +chr11 113679119 . C T 99 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=13,12,4,7;MQ=48;PV4=0.48,0.00013,9.5e-23,1 PL:DP:SP:GT:GQ 216,0,255:36:3:0/1:99 +chr11 113683249 . C A 41 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,8;MQ=49;PV4=1,0.18,0.1,1 PL:DP:SP:GT:GQ 71,0,74:13:0:0/1:72 +chr11 113685409 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 113698120 . T A 7.8 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0,0.17,1 PL:DP:SP:GT:GQ 37,0,41:3:0:0/1:39 +chr11 113702278 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 113718517 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 113744378 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 113750861 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 113775551 . GAGAAG GAG 23.5 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.25,1,0.38 PL:DP:SP:GT:GQ 61,0,41:3:0:0/1:44 +chr11 113791486 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113792913 . G GAGGTCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113846229 . A T 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113857249 . C A 22 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=8,4,7,0;MQ=49;PV4=0.25,0.09,0.42,0.21 PL:DP:SP:GT:GQ 52,0,177:19:6:0/1:55 +chr11 113865078 . ATGAC A 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 113893094 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 113906265 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113915486 . C CCTGTACG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 113961280 . TTGGAG T 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113970346 . CTCAA C 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 113973095 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113990464 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 113994357 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113995112 . C G 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 114002008 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 114009805 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114057792 . T G 58 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,9;MQ=48;PV4=1,0.14,0.056,1 PL:DP:SP:GT:GQ 88,0,76:14:0:0/1:79 +chr11 114068173 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114076425 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 114079863 . C CCA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 114091303 . g gATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114093725 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 114099751 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 114123099 . TG TGCGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 114140057 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 114156695 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114163563 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 114167476 . T C 4.77 . DP=40;AF1=0.4999;CI95=0.5,0.5;DP4=2,24,1,6;MQ=50;PV4=0.52,8.8e-12,2.6e-05,1 PL:DP:SP:GT:GQ 33,0,255:33:3:0/1:36 +chr11 114188768 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 114255093 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 114270427 . C CCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114272574 . T A 26 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=3,6,0,6;MQ=49;PV4=0.23,0.028,0.0015,0.29 PL:DP:SP:GT:GQ 56,0,207:15:6:0/1:59 +chr11 114273481 . A T 3.12 . DP=7;AF1=0.5261;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,1,0,1 PL:DP:SP:GT:GQ 30,0,10:3:0:0/1:13 +chr11 114275651 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114278195 . A G 8.64 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,2,0;MQ=48;PV4=0.33,0.018,0.092,1 PL:DP:SP:GT:GQ 38,0,76:4:5:0/1:41 +chr11 114308387 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 114324026 . A G 51 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=7,0,3,0;MQ=48;PV4=1,0.31,0,1 PL:DP:SP:GT:GQ 81,0,169:10:0:0/1:84 +chr11 114324444 . G A 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,4;MQ=49;PV4=0.47,1.9e-05,0.24,0.22 PL:DP:SP:GT:GQ 55,0,91:10:3:0/1:58 +chr11 114329600 . C CAA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,42:2:0:0/1:43 +chr11 114330018 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 114381276 . a aCCTCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114388432 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114388640 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 114409844 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 114422352 . G A 47 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 79,9,0:3:0:1/1:63 +chr11 114430047 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114437308 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 114437889 . A G 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr11 114442103 . A G 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=4,7,5,11;MQ=47;PV4=1,2.2e-05,6.3e-06,0.24 PL:DP:SP:GT:GQ 213,0,255:27:0:0/1:99 +chr11 114442163 . T C 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=4,3,0,5;MQ=49;PV4=0.081,0.0023,0.0033,0.45 PL:DP:SP:GT:GQ 33,0,217:12:11:0/1:36 +chr11 114448391 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114454201 . T TAA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,1,1,0.044 PL:DP:SP:GT:GQ 38,0,90:4:0:0/1:41 +chr11 114477961 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 114484751 . G T 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 114493587 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114546631 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 114596492 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114622587 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114626449 . T A 3.55 . DP=2;AF1=0.5023;CI95=0.5,0.5;DP4=1,0,1,0;MQ=32;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,20:2:0:0/1:23 +chr11 114634293 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 114635840 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114650823 . G A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 114662430 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 114674900 . A AGAGCG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 114686915 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114692185 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 114696363 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114697929 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 114727142 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114729633 . ga gAGTCCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114738145 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114751760 . T TTCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 114757350 . G A 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 114757584 . ACC ACCC 29.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 68,6,0:2:0:1/1:49 +chr11 114773582 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114777852 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 114783987 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 114835985 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 114836185 . C CACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114849227 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 114913345 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 114914035 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 114939437 . AGGG A 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 114952620 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 114963986 . CTT C 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 114983700 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 114984052 . A ACC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 114988490 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 114991158 . A T 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=41 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 115019355 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 115034801 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115041146 . TTTTAT TT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115047391 . A G 6.98 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=0,9,0,6;MQ=47;PV4=1,0.0091,0.048,1 PL:DP:SP:GT:GQ 36,0,175:15:0:0/1:39 +chr11 115047402 . C G 36 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=46;PV4=1,0.2,0.012,1 PL:DP:SP:GT:GQ 66,0,49:6:0:0/1:52 +chr11 115049470 . C A 11.3 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=10,1,0,5;MQ=49;PV4=0.0014,0.0013,0.0024,0.43 PL:DP:SP:GT:GQ 41,0,223:16:29:0/1:44 +chr11 115056731 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 115067735 . G T 6.2 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,44:2:0:0/1:37 +chr11 115075214 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115120974 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115137641 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115150237 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115154815 . tc tCAAACCAc 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 115157046 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 115158741 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115165111 . A G 38 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,0.1,0,1 PL:DP:SP:GT:GQ 68,0,41:3:0:0/1:44 +chr11 115170367 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115175528 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115198496 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115214884 . A AT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 115236563 . TC TCTCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115268254 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115280741 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115310973 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115349206 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115369481 . T C 5.46 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,34:2:0:0/1:34 +chr11 115379839 . c cCAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115390204 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115408921 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 115434137 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 115464218 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115527912 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115528332 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115535881 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 115569287 . CA CACAGTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115599471 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115603615 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 115615635 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 115623293 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 115634722 . CG CGCTAAAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115642598 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115653842 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 115661207 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115663484 . G C 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 115676866 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115682079 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 115683175 . A T 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,40:2:0:0/1:36 +chr11 115696146 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 115743982 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115760110 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 115762046 . C CTGACTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115762392 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115770747 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 115780729 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115782643 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 115791530 . c cTATTCTAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115806753 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115812370 . A T 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115818998 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115831696 . GCCTC GC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115846067 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115867595 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 115869754 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115912946 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115926904 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 115931546 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 115933316 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115935091 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115935152 . G GTATCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115953319 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 115958855 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115981598 . C CGGCCGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115995437 . A AAACGCTC 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 115998349 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116008511 . c cTAGTGCTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116010222 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116010428 . CA CAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116019442 . tat tATCTCAAGat 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116026381 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116033767 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 116039963 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116046483 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116076130 . GGGGTAT G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116081154 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116082439 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116088567 . T TACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116089011 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116118444 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116118475 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116118887 . CAG CAGTAG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 116129069 . GAGA GAGAAAAAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116131418 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116133785 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 116143420 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116157818 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116176003 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 116178137 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116187302 . ag aGTGGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116191184 . aaaataaataaa aaaataaa 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 116203915 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116204110 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116214322 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 116247411 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116290134 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116298449 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116343833 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116369374 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 116372646 . g gCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116381936 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116389205 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116389603 . CA CACCTTGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116409853 . c cGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116414651 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116477988 . C CTG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 116481498 . A G 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 116500980 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 116511894 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 116513816 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 116514848 . g gTTCCC 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116537425 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116546102 . ac aCc 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 116549915 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116558229 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116585240 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116625177 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116630935 . T A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116633729 . C T 3.01 . DP=35;AF1=0.4997;CI95=0.5,0.5;DP4=9,9,0,6;MQ=49;PV4=0.052,0.014,0.028,1 PL:DP:SP:GT:GQ 30,0,255:24:13:0/1:33 +chr11 116653367 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116655747 . G C 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,4,3,0;MQ=47;PV4=0.17,0.068,0.023,1 PL:DP:SP:GT:GQ 41,0,169:9:8:0/1:44 +chr11 116661138 . C T 9.31 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 116662311 . C A 4.13 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.15,0.11,1 PL:DP:SP:GT:GQ 32,0,90:5:0:0/1:35 +chr11 116686033 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 116693354 . G A 43 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=21,11,13,7;MQ=50;PV4=1,1.8e-17,1,1 PL:DP:SP:GT:GQ 73,0,255:52:0:0/1:76 +chr11 116693463 . C T 4.13 . DP=56;AF1=0.4998;CI95=0.5,0.5;DP4=4,7,0,4;MQ=49;PV4=0.52,1,0.3,0.49 PL:DP:SP:GT:GQ 32,0,131:15:3:0/1:35 +chr11 116693464 . C T 99 . DP=57;AF1=1;CI95=1,1;DP4=0,0,4,10;MQ=48 PL:DP:SP:GT:GQ 177,42,0:14:0:1/1:99 +chr11 116702774 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116703640 . G C 62.1 . DP=31;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=48 PL:DP:SP:GT:GQ 95,18,0:6:0:1/1:90 +chr11 116706858 . TTCT TTCTCT 6.55 . INDEL;DP=5;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,27:2:0:0/1:30 +chr11 116707684 . A G 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=44 PL:DP:SP:GT:GQ 218,45,0:15:0:1/1:99 +chr11 116715272 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 116716955 . C T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,35:2:0:0/1:36 +chr11 116729176 . GGAGA GGA 9.93 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=2,12,3,0;MQ=50;PV4=0.015,0.23,1,0.098 PL:DP:SP:GT:GQ 47,0,245:17:18:0/1:50 +chr11 116729179 . G C 6.98 . DP=27;AF1=0.4999;CI95=0.5,0.5;DP4=1,10,5,0;MQ=48;PV4=0.0014,0.034,0.0017,1 PL:DP:SP:GT:GQ 36,0,222:16:29:0/1:39 +chr11 116739242 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 116740970 . GG GGTGGAG 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 116744389 . T C 99 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,5,1,6;MQ=47;PV4=1,0.3,0.00029,1 PL:DP:SP:GT:GQ 153,0,119:12:0:0/1:99 +chr11 116753260 . G C 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116781856 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 116791168 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116824884 . T G 58 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=48;PV4=1,7.4e-05,0.02,1 PL:DP:SP:GT:GQ 88,0,154:10:0:0/1:91 +chr11 116831194 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116836718 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 116849134 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116849284 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 116852728 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116891647 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116891655 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116911858 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 116916674 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116923625 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116950176 . G T 4.11 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 34,9,0:3:0:1/1:63 +chr11 116962127 . a aCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116983731 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116983740 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117007238 . T TGTA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=49;PV4=1,1,1,0.00094 PL:DP:SP:GT:GQ 38,0,103:4:0:0/1:41 +chr11 117010440 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117032092 . TC TCTCGATGCC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117052068 . AGTCTC A 23.5 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=6,1,9,0;MQ=50;PV4=0.44,7.9e-07,1,1 PL:DP:SP:GT:GQ 61,0,202:16:0:0/1:64 +chr11 117052069 . GTCTCT G 99 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,6,0;MQ=50;PV4=1,0.0022,0.17,1 PL:DP:SP:GT:GQ 156,0,197:12:0:0/1:99 +chr11 117059347 . C T 68 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=49;PV4=1,0.0024,0.037,1 PL:DP:SP:GT:GQ 98,0,145:14:0:0/1:99 +chr11 117059552 . G A 99 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=2,29,2,11;MQ=48;PV4=0.57,4.6e-07,6.5e-21,1 PL:DP:SP:GT:GQ 167,0,255:44:2:0/1:99 +chr11 117063995 . C T 18.1 . DP=8;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,1,0.066,1 PL:DP:SP:GT:GQ 48,0,28:5:0:0/1:31 +chr11 117066189 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117066531 . A T 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 117066828 . T C,G 5.93 . DP=23;AF1=0.5938;CI95=0.5,1;DP4=0,1,0,5;MQ=46;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 48,14,28,19,0,40:6:0:0/1:7 +chr11 117072952 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117075040 . A T 3.01 . DP=24;AF1=0.4997;CI95=0.5,0.5;DP4=6,7,0,4;MQ=49;PV4=0.24,0.18,0.023,0.17 PL:DP:SP:GT:GQ 30,0,234:17:6:0/1:33 +chr11 117077817 . C T 20 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=48;PV4=1,1,0.085,1 PL:DP:SP:GT:GQ 50,0,82:7:0:0/1:53 +chr11 117095089 . T TTG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117096628 . A C 7.8 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=7,1,3,0;MQ=49;PV4=1,0.21,0.00056,0.27 PL:DP:SP:GT:GQ 37,0,145:11:0:0/1:40 +chr11 117100594 . A G 9.52 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=50;PV4=1,0.032,0.27,1 PL:DP:SP:GT:GQ 39,0,56:6:0:0/1:42 +chr11 117109270 . G T 14.7 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 47,12,0:4:0:1/1:72 +chr11 117109614 . T G 8.64 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=1,19,7,0;MQ=49;PV4=9e-06,1.5e-05,0.00018,1 PL:DP:SP:GT:GQ 38,0,251:27:50:0/1:41 +chr11 117123916 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 117152673 . A C 6.2 . DP=35;AF1=0.4999;CI95=0.5,0.5;DP4=2,8,4,0;MQ=48;PV4=0.015,0.034,0.053,1 PL:DP:SP:GT:GQ 35,0,199:14:18:0/1:38 +chr11 117154487 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117160347 . A G 99 . DP=40;AF1=1;CI95=1,1;DP4=0,1,20,12;MQ=48;PV4=0.39,1,1,1 PL:DP:SP:GT:GQ 255,76,0:33:0:1/1:99 +chr11 117163765 . C A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,22,15;MQ=49;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 220,98,0:38:0:1/1:99 +chr11 117163824 . C G 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=6,15,7,8;MQ=48;PV4=0.31,7.1e-05,2.4e-14,0.34 PL:DP:SP:GT:GQ 230,0,255:36:5:0/1:99 +chr11 117175461 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 117177948 . G GAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117182939 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117183789 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117206329 . A AGGAGGAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117208765 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 117209253 . CTCTT CTCTTCTT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,108:4:0:0/1:41 +chr11 117224483 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 117251269 . G GAGTCTGAA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117253313 . GGC GGCGC 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 117256647 . AA AAAGATCCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117261206 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 117265246 . C A,T 4.99 . DP=6;AF1=0.5429;CI95=0.5,1;DP4=0,1,0,3;MQ=48;PV4=1,1,0.029,0.069 PL:DP:SP:GT:GQ 41,8,24,16,0,36:4:0:0/1:11 +chr11 117265871 . GCT G 13.7 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,2;MQ=50;PV4=0.1,0.23,1,0.37 PL:DP:SP:GT:GQ 51,0,96:5:10:0/1:54 +chr11 117270959 . a aGTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117279821 . TCTTCC TC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,77:4:0:0/1:41 +chr11 117282800 . G T 6.98 . DP=46;AF1=0.4999;CI95=0.5,0.5;DP4=18,5,4,2;MQ=50;PV4=0.61,3.1e-09,2.5e-08,1 PL:DP:SP:GT:GQ 36,0,255:29:2:0/1:39 +chr11 117294743 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 117296481 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117301679 . A G 36 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,1,5,0;MQ=47;PV4=1,1,0.00055,1 PL:DP:SP:GT:GQ 66,0,92:12:0:0/1:69 +chr11 117301818 . C T 14.2 . DP=10;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.036,0.26,1 PL:DP:SP:GT:GQ 44,0,22:4:0:0/1:25 +chr11 117304196 . C G 21 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=5,7,0,5;MQ=49;PV4=0.24,0.068,0.019,1 PL:DP:SP:GT:GQ 51,0,244:17:6:0/1:54 +chr11 117309989 . C T 17.1 . DP=39;AF1=0.9999;CI95=0.5,1;DP4=0,1,6,0;MQ=49;PV4=0.14,0.3,0.31,1 PL:DP:SP:GT:GQ 47,3,0:7:0:1/1:41 +chr11 117310022 . A G 42.1 . DP=51;AF1=1;CI95=0.5,1;DP4=1,0,1,7;MQ=50;PV4=0.22,0.15,0.32,1 PL:DP:SP:GT:GQ 73,5,0:9:0:1/1:46 +chr11 117331958 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117332352 . A G 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,1,8;MQ=47 PL:DP:SP:GT:GQ 135,27,0:9:0:1/1:99 +chr11 117332875 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 117335722 . T C 99 . DP=45;AF1=1;CI95=1,1;DP4=0,0,7,4;MQ=49 PL:DP:SP:GT:GQ 132,33,0:11:0:1/1:99 +chr11 117336865 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 117342462 . T C 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=47 PL:DP:SP:GT:GQ 135,24,0:8:0:1/1:96 +chr11 117375596 . G A 99 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=8,0,7,2;MQ=46;PV4=0.47,1,2.2e-19,1 PL:DP:SP:GT:GQ 213,0,171:17:3:0/1:99 +chr11 117384562 . C G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 117389270 . C T 20 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=8,6,0,5;MQ=49;PV4=0.045,0.041,3.2e-09,1 PL:DP:SP:GT:GQ 50,0,255:19:14:0/1:53 +chr11 117391966 . G A 22 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=49;PV4=1,2.7e-05,0.12,1 PL:DP:SP:GT:GQ 52,0,203:10:0:0/1:55 +chr11 117394845 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117395495 . TGCAG TG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.3 PL:DP:SP:GT:GQ 41,0,60:3:0:0/1:44 +chr11 117403175 . C A 3.54 . DP=49;AF1=0.4998;CI95=0.5,0.5;DP4=15,15,0,9;MQ=49;PV4=0.0069,1.3e-05,7.7e-08,1 PL:DP:SP:GT:GQ 31,0,255:39:22:0/1:34 +chr11 117406497 . T G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr11 117416460 . T C 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr11 117421858 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 117428785 . ATC ATCTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117433170 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117455292 . TC TCGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117478212 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117482762 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117492602 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117495858 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117518527 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117550882 . GC GCCTATATGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117556127 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 117557919 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117558855 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117558862 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117562889 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 117590479 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117610664 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 117620868 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117622598 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117623968 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 117634920 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117642971 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 117643195 . TGCAGGC TGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117645140 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117670573 . a aCTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117699557 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117702900 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117708837 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117719684 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117720448 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117726299 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117727178 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117729212 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 117735697 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117773110 . G C 17.6 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 50,12,0:4:0:1/1:72 +chr11 117774291 . A C,T 33.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 70,16,61,4,0,61:5:0:1/1:72 +chr11 117777899 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117782455 . A G 9.52 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 39,0,51:5:0:0/1:42 +chr11 117787703 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 117806127 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117815409 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 117838118 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 117841413 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117842526 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 117844269 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 117846452 . G C 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,38:2:0:0/1:36 +chr11 117846909 . A ATCTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117858983 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117864846 . A G 92 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,12;MQ=47;PV4=1,3.9e-05,0.00042,1 PL:DP:SP:GT:GQ 122,0,212:24:0:0/1:99 +chr11 117869670 . A G 26.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 59,12,0:4:0:1/1:72 +chr11 117871165 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 117887180 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117954750 . ctcaaaaa c 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117965595 . C T 19.2 . DP=20;AF1=0.5163;CI95=0.5,1;DP4=0,1,0,4;MQ=49;PV4=1,0.17,0.34,1 PL:DP:SP:GT:GQ 49,0,12:5:0:0/1:15 +chr11 117965646 . G A 3.01 . DP=8;AF1=0.4997;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.004,0.14,1 PL:DP:SP:GT:GQ 30,0,112:5:0:0/1:33 +chr11 117970784 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117979744 . C A 69 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 101,9,0:3:0:1/1:63 +chr11 117982495 . T G 16.2 . DP=17;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,3,1;MQ=49;PV4=0.4,0.051,0.34,1 PL:DP:SP:GT:GQ 46,0,16:5:0:0/1:19 +chr11 117984256 . T A 12.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.048,0.13,1 PL:DP:SP:GT:GQ 42,0,41:3:0:0/1:41 +chr11 117988082 . T C 52 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=8,13,13,1;MQ=49;PV4=0.0015,6.9e-07,0.0092,1 PL:DP:SP:GT:GQ 82,0,255:35:28:0/1:85 +chr11 117988387 . A G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 118003752 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 118015832 . G A 4.77 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=5,6,2,2;MQ=50;PV4=1,0.0021,0.017,1 PL:DP:SP:GT:GQ 33,0,255:15:0:0/1:36 +chr11 118018700 . GC GCTGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118037564 . G A 10.2 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 118037813 . G T 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=45 PL:DP:SP:GT:GQ 234,39,0:13:0:1/1:99 +chr11 118039553 . T C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr11 118067426 . A G 27.5 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 118069959 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118071097 . T C 56.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 89,18,0:6:0:1/1:90 +chr11 118074337 . A G 99 . DP=52;AF1=1;CI95=1,1;DP4=0,1,14,25;MQ=46;PV4=1,0.13,0.41,0.15 PL:DP:SP:GT:GQ 255,83,0:40:0:1/1:99 +chr11 118081345 . A T 39 . DP=65;AF1=0.6671;CI95=0.5,1;DP4=1,0,3,4;MQ=49;PV4=1,0.22,0.31,1 PL:DP:SP:GT:GQ 68,0,3:8:0:0/1:5 +chr11 118083664 . A G 28.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=50 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 +chr11 118100501 . A G 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 31,0,114:4:0:0/1:34 +chr11 118101742 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118103182 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118104676 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118107805 . A G 79 . DP=54;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,2,11;MQ=49;PV4=1,0.0031,0.17,1 PL:DP:SP:GT:GQ 109,0,29:15:0:0/1:32 +chr11 118110977 . T C 37 . DP=59;AF1=0.502;CI95=0.5,0.5;DP4=1,1,1,5;MQ=49;PV4=0.46,0.18,0.22,1 PL:DP:SP:GT:GQ 67,0,21:8:3:0/1:24 +chr11 118131049 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118134785 . T G 99 . DP=33;AF1=1;CI95=1,1;DP4=2,0,22,1;MQ=48;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 158,34,0:25:0:1/1:99 +chr11 118147284 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 118158330 . a aGGTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118159045 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118164538 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118209960 . A C 5.56 . DP=26;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,1,2;MQ=49;PV4=1,0.13,0.33,1 PL:DP:SP:GT:GQ 34,0,12:4:0:0/1:15 +chr11 118210106 . G C 69 . DP=16;AF1=1;CI95=1,1;DP4=1,0,13,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 102,28,0:14:0:1/1:99 +chr11 118215075 . Aggctggctggctggctggctg Aggctggctggctggctg 73.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 113,9,0:3:0:1/1:63 +chr11 118216008 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 118221474 . G A 4.15 . DP=32;AF1=0.503;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.27,0.33,1 PL:DP:SP:GT:GQ 32,0,19:3:0:0/1:22 +chr11 118239266 . G A 14.4 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 47,15,0:5:0:1/1:75 +chr11 118240332 . T C 62.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 95,18,0:6:0:1/1:90 +chr11 118240367 . T TCTCTACACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118243921 . A T 3.54 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,1,4;MQ=49;PV4=0.52,0.15,1,1 PL:DP:SP:GT:GQ 31,0,71:9:3:0/1:34 +chr11 118245592 . GT GTCT 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 38,0,83:4:0:0/1:41 +chr11 118245971 . CTGTGTGTGTGTGTGTGTGT CTGTGTGTGTGTGTGTGTGTGTGT,CTGTGTGTGTGTGTGTGTGTGT 5.62 . INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=24 PL:DP:SP:GT:GQ 50,13,41,7,0,38:3:0:1/1:49 +chr11 118257048 . GTTTT GTTTTT 7.15 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 118261053 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118263398 . G T 41.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=39 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 118263413 . A T 25 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=48;PV4=1,1,0.0031,0.34 PL:DP:SP:GT:GQ 55,0,46:6:0:0/1:48 +chr11 118271305 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118305956 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 118332351 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 118339627 . C G 9.52 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.19,0.02,1 PL:DP:SP:GT:GQ 39,0,61:6:0:0/1:42 +chr11 118351035 . CTTTTTTTTTT CTTT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118351747 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118392569 . T G 9.52 . DP=5;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.14,0.31 PL:DP:SP:GT:GQ 39,0,27:5:0:0/1:30 +chr11 118392729 . A G 3.54 . DP=32;AF1=0.4998;CI95=0.5,0.5;DP4=7,8,4,1;MQ=48;PV4=0.32,0.063,1,1 PL:DP:SP:GT:GQ 31,0,232:20:5:0/1:34 +chr11 118405305 . G A 61.1 . DP=41;AF1=0.505;CI95=0.5,0.5;DP4=1,1,2,4;MQ=46;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 91,0,17:8:0:0/1:20 +chr11 118405343 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,1,8;MQ=42 PL:DP:SP:GT:GQ 198,27,0:9:0:1/1:99 +chr11 118405453 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118422866 . AA AATA 14.6 . INDEL;DP=39;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.39,1,0.061 PL:DP:SP:GT:GQ 52,0,41:3:0:0/1:44 +chr11 118422868 . C T 65 . DP=38;AF1=1;CI95=1,1;DP4=1,0,30,0;MQ=49;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 98,73,0:31:0:1/1:99 +chr11 118430519 . C T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,9,7;MQ=50 PL:DP:SP:GT:GQ 154,48,0:16:0:1/1:99 +chr11 118435672 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 118451901 . T C 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=45 PL:DP:SP:GT:GQ 189,60,0:20:0:1/1:99 +chr11 118468288 . TAG TAGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118471423 . T C 10.2 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 118479633 . C CTTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118486458 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118486670 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118488766 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118495231 . AGCCTGC AGC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 118498889 . C A 16.1 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=13,6,0,9;MQ=49;PV4=0.00083,0.004,0.0055,1 PL:DP:SP:GT:GQ 46,0,255:28:31:0/1:49 +chr11 118507659 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 118527534 . C G 28 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=2,2,1,3;MQ=48;PV4=1,0.034,0.087,1 PL:DP:SP:GT:GQ 58,0,127:8:0:0/1:61 +chr11 118563301 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 118574771 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 118594311 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118603256 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118609855 . aacc a 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 118622383 . CTT CTTAATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118655909 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 118681360 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118714297 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118746208 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 118764239 . GG GGTG 7.52 . INDEL;DP=2;AF1=0.5263;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,10:2:0:0/1:13 +chr11 118766888 . AG AGACG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 118769032 . G A 51 . DP=12;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=50 PL:DP:SP:GT:GQ 84,33,0:11:0:1/1:99 +chr11 118769668 . GTT GT 3.93 . INDEL;DP=14;AF1=0.5263;CI95=0.5,1;DP4=0,1,1,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,10:3:0:0/1:13 +chr11 118769669 . TTG TTTCCTG 7.36 . INDEL;DP=11;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,22:2:0:0/1:25 +chr11 118772474 . G T 15.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,0;MQ=48;PV4=0.1,0.084,0.046,0.44 PL:DP:SP:GT:GQ 45,0,79:6:10:0/1:48 +chr11 118774231 . C T 5.46 . DP=9;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,1,0.048,0.046 PL:DP:SP:GT:GQ 34,0,27:4:0:0/1:29 +chr11 118777190 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 118782323 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 118800189 . CT CTGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118855718 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118869561 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 118873910 . TGG TGGG 86.5 . INDEL;DP=8;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=31 PL:DP:SP:GT:GQ 127,24,0:8:0:1/1:96 +chr11 118882571 . G T 4.13 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.27,0.048,1 PL:DP:SP:GT:GQ 32,0,53:4:0:0/1:35 +chr11 118888683 . G A 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=47;PV4=1,1,0.089,1 PL:DP:SP:GT:GQ 32,0,63:3:0:0/1:35 +chr11 118916222 . C CAA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 118918150 . G C 7.8 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,30:2:0:0/1:32 +chr11 118919206 . T C 75.5 . DP=9;AF1=0.9998;CI95=0.5,1;DP4=0,1,4,2;MQ=47;PV4=0.43,1,1,1 PL:DP:SP:GT:GQ 105,2,0:7:0:1/1:37 +chr11 118920453 . T C 47.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr11 118923519 . G GCGCCCCCTGGGTT 99 . INDEL;DP=43;AF1=1;CI95=1,1;DP4=0,0,14,27;MQ=50 PL:DP:SP:GT:GQ 255,123,0:41:0:1/1:99 +chr11 118941097 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 118959732 . C T 70.2 . DP=8;AF1=0.7303;CI95=0.5,1;DP4=1,0,6,0;MQ=47;PV4=1,1,0.12,1 PL:DP:SP:GT:GQ 99,0,2:7:0:0/1:3 +chr11 118962816 . C A 63.5 . DP=41;AF1=1;CI95=0.5,1;DP4=1,0,3,4;MQ=48;PV4=1,0.49,0.27,1 PL:DP:SP:GT:GQ 94,4,0:8:0:1/1:45 +chr11 118967758 . T C 99 . DP=49;AF1=1;CI95=1,1;DP4=0,0,16,27;MQ=43 PL:DP:SP:GT:GQ 255,129,0:43:0:1/1:99 +chr11 118970875 . T C 25 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 118970878 . A C 3.02 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118979092 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 118985151 . T C 68.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 101,12,0:4:0:1/1:72 +chr11 119003322 . C A 13 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 119005088 . C T 92.1 . DP=50;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=46 PL:DP:SP:GT:GQ 125,21,0:7:0:1/1:84 +chr11 119005132 . C T 74.1 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=48 PL:DP:SP:GT:GQ 107,18,0:6:0:1/1:90 +chr11 119006416 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119031118 . A C 5.46 . DP=27;AF1=0.4999;CI95=0.5,0.5;DP4=5,3,2,3;MQ=49;PV4=0.59,0.03,0.00044,0.3 PL:DP:SP:GT:GQ 34,0,177:13:2:0/1:37 +chr11 119031841 . GCCC GCCCC 99 . INDEL;DP=25;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=50 PL:DP:SP:GT:GQ 169,57,0:19:0:1/1:99 +chr11 119031845 . T TC 3.81 . INDEL;DP=22;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 119032374 . TG TGCAACAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 119034191 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 119037343 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119043745 . C T 99 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,9;MQ=46;PV4=0.25,1,0.00079,1 PL:DP:SP:GT:GQ 166,0,55:12:0:0/1:58 +chr11 119050896 . C T 72 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,7,2,5;MQ=49;PV4=1,0.003,0.0032,1 PL:DP:SP:GT:GQ 102,0,255:18:0:0/1:99 +chr11 119052826 . C A 73 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,10,3,4;MQ=49;PV4=0.3,1.8e-05,0.001,0.44 PL:DP:SP:GT:GQ 103,0,255:19:5:0/1:99 +chr11 119059404 . G A 23 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=8,0,3,2;MQ=49;PV4=0.13,0.00045,0.03,1 PL:DP:SP:GT:GQ 53,0,172:13:9:0/1:56 +chr11 119061178 . T C 22 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,4;MQ=48;PV4=0.076,0.054,0.044,0.43 PL:DP:SP:GT:GQ 52,0,159:10:11:0/1:55 +chr11 119063762 . C T 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0.15,0,0.42 PL:DP:SP:GT:GQ 31,0,114:4:0:0/1:34 +chr11 119063908 . C T 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=3,7,4,15;MQ=49;PV4=0.66,4.4e-08,0.11,1 PL:DP:SP:GT:GQ 147,0,236:29:2:0/1:99 +chr11 119065725 . GC GCTGCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 119126128 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119142396 . A C 4.86 . DP=5;AF1=0.5162;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,1,0,1 PL:DP:SP:GT:GQ 33,0,12:3:0:0/1:15 +chr11 119148584 . C G 21 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,4;MQ=48;PV4=1,0.079,0.1,0.023 PL:DP:SP:GT:GQ 51,0,174:14:0:0/1:54 +chr11 119149328 . GGAG GGAGAG 11.8 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,4,2,0;MQ=50;PV4=0.067,0.28,1,1 PL:DP:SP:GT:GQ 49,0,125:6:12:0/1:52 +chr11 119149329 . GAGCAG GAG 20.5 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,4,2,0;MQ=50;PV4=0.067,0.14,1,0.32 PL:DP:SP:GT:GQ 58,0,128:6:12:0/1:61 +chr11 119149331 . GC GCTC 10.8 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,3,4,0;MQ=50;PV4=0.029,0.4,1,1 PL:DP:SP:GT:GQ 48,0,77:7:15:0/1:51 +chr11 119169408 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119181970 . T TTCCACTATGA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,0.015,1,1 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr11 119189111 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 119194332 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119203906 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119211822 . A G 5.47 . DP=2;AF1=0.5009;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,24:2:0:0/1:27 +chr11 119213303 . C T 5.46 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,2,1;MQ=50;PV4=0.43,5.7e-05,0.14,1 PL:DP:SP:GT:GQ 34,0,136:7:0:0/1:37 +chr11 119213399 . C G 8.64 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,3,4,0;MQ=49;PV4=0.2,0.19,0.057,0.087 PL:DP:SP:GT:GQ 38,0,89:10:7:0/1:41 +chr11 119213400 . T A 23 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,2,4,1;MQ=49;PV4=1,0.31,0.22,1 PL:DP:SP:GT:GQ 53,0,78:11:0:0/1:56 +chr11 119216231 . A G 99 . DP=29;AF1=1;CI95=1,1;DP4=0,1,0,25;MQ=48;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 164,58,0:26:0:1/1:99 +chr11 119229964 . G A 77 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=14,2,11,1;MQ=49;PV4=1,9.5e-07,0.0067,1 PL:DP:SP:GT:GQ 107,0,255:28:0:0/1:99 +chr11 119235802 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119239356 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 119240071 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119244095 . C T 82 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=45;PV4=1,1,0,1 PL:DP:SP:GT:GQ 112,0,50:6:0:0/1:53 +chr11 119274570 . A G 6.98 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,0,3;MQ=48;PV4=0.14,0.12,0.38,1 PL:DP:SP:GT:GQ 36,0,120:8:8:0/1:39 +chr11 119274840 . TGA T 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 119274844 . A AGCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 119290964 . T C 10.4 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,9,0,5;MQ=48;PV4=0.51,0.13,0.085,1 PL:DP:SP:GT:GQ 40,0,212:17:3:0/1:43 +chr11 119291688 . A G 68 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=49 PL:DP:SP:GT:GQ 101,27,0:9:0:1/1:99 +chr11 119299718 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119322430 . G T 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 119359006 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 119383391 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 119390338 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119438915 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119453632 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119478471 . T TTCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 119501475 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119509625 . C T 14.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 119510644 . A C 15.1 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr11 119538783 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 119570917 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119585654 . G C 3.54 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,1;MQ=47;PV4=1,0.28,0.29,0.28 PL:DP:SP:GT:GQ 31,0,36:3:0:0/1:33 +chr11 119596353 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119622944 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119641793 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119647146 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 119669321 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 119686194 . cttt c 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 119688882 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119692663 . T C 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,5,8;MQ=45 PL:DP:SP:GT:GQ 247,39,0:13:0:1/1:99 +chr11 119700701 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119722638 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119730294 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 119764820 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119779477 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119799109 . a aAGACAGAG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 119842018 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 119857468 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119857480 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119886921 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119887955 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119890617 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119897700 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119908771 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119937800 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 119948159 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119999191 . A G 54.1 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 87,21,0:7:0:1/1:84 +chr11 120009190 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 120047578 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 120048892 . A ATGGTC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 120052266 . C CCCACCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 120055425 . GAC G 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 120076630 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 120098788 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 120107049 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 120132665 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120146500 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 120150801 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 120169999 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120170521 . T C 20 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 120175650 . GTa GTATCTGATGCTa 7.42 . INDEL;DP=3;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr11 120175747 . GC GCGCC 48.5 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,2,2,1;MQ=50;PV4=1,1,1,0.39 PL:DP:SP:GT:GQ 86,0,116:7:0:0/1:89 +chr11 120175749 . A G 87.1 . DP=21;AF1=0.505;CI95=0.5,0.5;DP4=2,0,3,6;MQ=49;PV4=0.18,0.21,0.23,1 PL:DP:SP:GT:GQ 117,0,17:11:7:0/1:20 +chr11 120198093 . G A 81.5 . DP=37;AF1=1;CI95=0.5,1;DP4=0,1,7,2;MQ=48;PV4=0.3,0.42,0.24,1 PL:DP:SP:GT:GQ 113,7,0:10:0:1/1:57 +chr11 120245664 . T TAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 120264404 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 120276126 . TG TGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 120280437 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120310978 . A C 19.1 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,12;MQ=50;PV4=1,3.4e-14,1,1 PL:DP:SP:GT:GQ 49,0,220:24:0:0/1:52 +chr11 120318678 . TC TCGCCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 120322304 . T A 30 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=10,2,0,7;MQ=49;PV4=0.00071,1.8e-05,0.042,0.33 PL:DP:SP:GT:GQ 60,0,255:19:31:0/1:63 +chr11 120325974 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120330019 . T G 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,4,1,3;MQ=50;PV4=1,0.0017,0.059,0.46 PL:DP:SP:GT:GQ 41,0,166:9:0:0/1:44 +chr11 120363487 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 120371010 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120379556 . T A 24.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 120380776 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120405437 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 120408283 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 120419753 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120427960 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 120467741 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120490732 . G C 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,37:2:0:0/1:36 +chr11 120497224 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 120499478 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 120537754 . g gTTA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 120584054 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 120658634 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 120713897 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120717446 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 120717899 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120734639 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120739942 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120741147 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120745874 . C T 21 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=9,1,5,0;MQ=49;PV4=1,0.26,0.01,0.37 PL:DP:SP:GT:GQ 51,0,151:15:0:0/1:54 +chr11 120745967 . A G 62 . DP=22;AF1=1;CI95=1,1;DP4=0,1,0,18;MQ=49;PV4=1,1,0.38,1 PL:DP:SP:GT:GQ 95,39,0:19:0:1/1:99 +chr11 120751098 . c cTT 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 120790821 . g gGCAGTCC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 120819156 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120823528 . A G 30 . DP=26;AF1=1;CI95=1,1;DP4=1,0,20,0;MQ=50;PV4=1,0.0018,0.41,1 PL:DP:SP:GT:GQ 63,33,0:21:0:1/1:99 +chr11 120827609 . A G 46.8 . DP=28;AF1=1;CI95=0.5,1;DP4=1,0,0,7;MQ=49;PV4=0.12,1,0.26,1 PL:DP:SP:GT:GQ 79,10,0:8:0:1/1:60 +chr11 120831520 . T C 84.8 . DP=11;AF1=0.95;CI95=0.5,1;DP4=1,0,7,0;MQ=46;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 113,0,0:8:0:1/1:10 +chr11 120835136 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 120852961 . C A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,11,32;MQ=47;PV4=0.27,0.15,0.054,1 PL:DP:SP:GT:GQ 255,101,0:44:0:1/1:99 +chr11 120858608 . GAAACAAACA GAAACA 52.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 91,6,0:2:0:1/1:49 +chr11 120872322 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 120934312 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120962894 . G GGAAGATAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 120979923 . A G 5.46 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,3,0;MQ=49;PV4=0.1,0.074,0.13,1 PL:DP:SP:GT:GQ 34,0,67:6:10:0/1:37 +chr11 120982516 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 120996292 . A G 3.01 . DP=37;AF1=0.4997;CI95=0.5,0.5;DP4=10,8,3,3;MQ=49;PV4=1,0.00031,0.25,1 PL:DP:SP:GT:GQ 30,0,255:24:0:0/1:33 +chr11 120996311 . G T 12.3 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=5,12,6,0;MQ=48;PV4=0.0046,0.0092,0.32,1 PL:DP:SP:GT:GQ 42,0,255:23:23:0/1:45 +chr11 120996316 . C T 3.01 . DP=33;AF1=0.4997;CI95=0.5,0.5;DP4=8,11,5,0;MQ=49;PV4=0.041,0.0052,0.014,0.46 PL:DP:SP:GT:GQ 30,0,255:24:14:0/1:33 +chr11 120996412 . G T 11.3 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=22,9,3,10;MQ=49;PV4=0.0066,1.2e-05,4.9e-07,0.079 PL:DP:SP:GT:GQ 41,0,255:44:22:0/1:44 +chr11 121018051 . C CAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 121028598 . T G 5.46 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=3,2,0,4;MQ=47;PV4=0.17,0.25,0.0033,1 PL:DP:SP:GT:GQ 34,0,95:9:8:0/1:37 +chr11 121028601 . C T 6.2 . DP=24;AF1=0.4999;CI95=0.5,0.5;DP4=5,2,0,5;MQ=48;PV4=0.028,0.03,0.038,1 PL:DP:SP:GT:GQ 35,0,161:12:16:0/1:38 +chr11 121032978 . G A 49.3 . DP=52;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=49 PL:DP:SP:GT:GQ 82,15,0:5:0:1/1:75 +chr11 121036177 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 121038810 . C T 99 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=21,18,13,7;MQ=49;PV4=0.58,7.1e-23,8.6e-05,0.24 PL:DP:SP:GT:GQ 139,0,255:59:2:0/1:99 +chr11 121053042 . g gATCC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 121059749 . T C 23 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=49;PV4=1,1,0.045,0.47 PL:DP:SP:GT:GQ 53,0,61:10:0:0/1:55 +chr11 121059750 . A G 24 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,0.22,1,0.11 PL:DP:SP:GT:GQ 54,0,41:8:0:0/1:44 +chr11 121084399 . tc tCGCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 121091021 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 121091736 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 121167006 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 121178175 . G C 3.01 . DP=18;AF1=0.4997;CI95=0.5,0.5;DP4=3,4,0,3;MQ=48;PV4=0.47,0.12,0.46,1 PL:DP:SP:GT:GQ 30,0,148:10:3:0/1:33 +chr11 121179987 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 121205761 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 121233586 . G C 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 121252832 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 121334739 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121342365 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121367626 . T C 29 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=21,13,4,5;MQ=49;PV4=0.46,4.5e-08,3.8e-07,0.044 PL:DP:SP:GT:GQ 59,0,255:43:3:0/1:62 +chr11 121376569 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 121394733 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 121403229 . T C 60.1 . DP=38;AF1=1;CI95=0.5,1;DP4=1,0,1,9;MQ=48;PV4=0.18,0.031,1,1 PL:DP:SP:GT:GQ 91,5,0:11:0:1/1:46 +chr11 121403345 . T C 42.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=50 PL:DP:SP:GT:GQ 75,18,0:6:0:1/1:90 +chr11 121411064 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 121414456 . A C 42.5 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 75,12,0:4:0:1/1:72 +chr11 121416187 . A C 3.98 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 121420632 . A C 29 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,0,6,0;MQ=49;PV4=1,0.18,0.11,1 PL:DP:SP:GT:GQ 59,0,43:9:0:0/1:46 +chr11 121424453 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121425810 . A G 26 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr11 121425812 . T C 12.3 . DP=12;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,3,0;MQ=47;PV4=1,0.32,0.38,0.38 PL:DP:SP:GT:GQ 42,0,30:5:0:0/1:33 +chr11 121425817 . G T 4.13 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.0076,0.41,1 PL:DP:SP:GT:GQ 32,0,42:5:0:0/1:35 +chr11 121437819 . C G 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=48 PL:DP:SP:GT:GQ 142,39,0:13:0:1/1:99 +chr11 121438863 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 121444863 . TT TTCCGT 5.8 . INDEL;DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 121444864 . TT TTGCT 12.7 . INDEL;DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 121445084 . T C 10.5 . DP=28;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,1,1;MQ=48;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 40,0,13:3:0:0/1:16 +chr11 121458645 . G A 22 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=14,0,11,0;MQ=50;PV4=1,9.1e-15,0.13,1 PL:DP:SP:GT:GQ 52,0,232:25:0:0/1:55 +chr11 121461921 . C T 3.54 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,0.25,0.053,1 PL:DP:SP:GT:GQ 31,0,95:9:0:0/1:34 +chr11 121475798 . T A 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,10,2;MQ=46 PL:DP:SP:GT:GQ 186,36,0:12:0:1/1:99 +chr11 121483269 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121491782 . G A 83 . DP=30;AF1=1;CI95=1,1;DP4=0,0,8,3;MQ=49 PL:DP:SP:GT:GQ 116,33,0:11:0:1/1:99 +chr11 121498259 . G GTAGGA 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,55:3:0:0/1:44 +chr11 121498260 . GC GCTGTTAC 7.41 . INDEL;DP=12;AF1=0.508;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,15:2:0:0/1:18 +chr11 121498264 . GT GTTT 8.19 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 121505440 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 121529711 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121531478 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 121605856 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 121607200 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 121632694 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 121636027 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 121672313 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 121681165 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 121706322 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 121723081 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121758079 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121781516 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121788741 . C CTCAAAGAT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 121805346 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121808403 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 121809518 . T TATTATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 121852665 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 121875371 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 121917679 . G T 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 121921255 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121936541 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121937987 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122029054 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 122029798 . A ATTAATAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122035515 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122084406 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 122127464 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122174801 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122187884 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122205048 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 122295088 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122308509 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122345706 . G GGCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122353112 . T G 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 122365223 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122366433 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122410534 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122421837 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122441198 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122475251 . G A 5.46 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,37:2:0:0/1:35 +chr11 122485346 . G GGGTCTAA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,0.28,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 122489595 . G A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122489617 . T C 3.55 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122490000 . T C 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 122496939 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 122529354 . g gTATAAAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122607734 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122612093 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122615099 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 122626320 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 122631817 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 122638444 . AAG AAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122650172 . C G 77.1 . DP=11;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=47 PL:DP:SP:GT:GQ 110,21,0:7:0:1/1:84 +chr11 122653713 . C G 3.01 . DP=22;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.00047,0.027,1 PL:DP:SP:GT:GQ 30,0,185:10:0:0/1:33 +chr11 122660620 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 122665437 . A G 99 . DP=41;AF1=1;CI95=1,1;DP4=0,1,14,20;MQ=44;PV4=1,1,0.00077,1 PL:DP:SP:GT:GQ 255,82,0:35:0:1/1:99 +chr11 122665646 . C T 6.98 . DP=2;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,29:2:0:0/1:31 +chr11 122667772 . C T 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,0,2;MQ=48;PV4=0.47,0.39,0.064,0.24 PL:DP:SP:GT:GQ 31,0,91:6:3:0/1:34 +chr11 122667772 . CA CACTA 3.25 . INDEL;DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 38,0,76:4:0:0/1:41 +chr11 122671944 . T G 21 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=17,8,0,12;MQ=49;PV4=7.1e-05,4.2e-05,0.002,1 PL:DP:SP:GT:GQ 51,0,255:37:41:0/1:54 +chr11 122672383 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 122676311 . a aGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122689559 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122691831 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 122709108 . A AT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 122709178 . T C 15.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=49;PV4=1,0.023,0.053,0.39 PL:DP:SP:GT:GQ 45,0,131:9:0:0/1:48 +chr11 122742050 . T C 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=4,6,3,10;MQ=48;PV4=0.65,2e-06,7.2e-07,1 PL:DP:SP:GT:GQ 173,0,255:23:2:0/1:99 +chr11 122763483 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122775227 . T C 23 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr11 122795699 . A T 57 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,7;MQ=47;PV4=0.22,0.11,1,1 PL:DP:SP:GT:GQ 87,0,42:9:0:0/1:45 +chr11 122827171 . T C 34 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=5,0,6,0;MQ=48;PV4=1,0.019,0.16,1 PL:DP:SP:GT:GQ 64,0,117:11:0:0/1:67 +chr11 122830214 . G A 50.2 . DP=18;AF1=1;CI95=0.5,1;DP4=0,1,0,13;MQ=50;PV4=1,0.081,0.38,1 PL:DP:SP:GT:GQ 83,16,0:14:0:1/1:80 +chr11 122831622 . G C 13.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 122839559 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122848045 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122853080 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122859427 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 122888678 . G C 10.4 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,0.037,0,1 PL:DP:SP:GT:GQ 40,0,40:3:0:0/1:40 +chr11 122888804 . T G 10.4 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,2,1;MQ=49;PV4=1,1,0.0056,0.12 PL:DP:SP:GT:GQ 40,0,85:9:0:0/1:43 +chr11 122895102 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 122906650 . T C 4.77 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,3;MQ=42;PV4=1,1.9e-05,0.074,1 PL:DP:SP:GT:GQ 33,0,120:6:0:0/1:36 +chr11 122914719 . c cCCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122928622 . A G 33.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=34 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 122929955 . T C 13 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 122930127 . gcgaGTC gCGAGTcgaGTC 99 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=9,0,12,0;MQ=50;PV4=1,1,1,0.065 PL:DP:SP:GT:GQ 211,0,124:21:0:0/1:99 +chr11 122931570 . A G 62 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,8;MQ=48;PV4=1,6.7e-11,6.5e-06,1 PL:DP:SP:GT:GQ 92,0,195:16:0:0/1:95 +chr11 122944319 . C A 18.1 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.17,0.00028,1 PL:DP:SP:GT:GQ 48,0,97:10:0:0/1:51 +chr11 122944324 . C T 4.77 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=0,6,0,5;MQ=49;PV4=1,1,0.045,1 PL:DP:SP:GT:GQ 33,0,56:11:0:0/1:36 +chr11 122950866 . a aGGTATG 7.35 . INDEL;DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,33:2:0:0/1:36 +chr11 122955402 . C T 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=18,25,6,4;MQ=49;PV4=0.48,0.00015,6.6e-25,0.081 PL:DP:SP:GT:GQ 137,0,255:53:3:0/1:99 +chr11 122965501 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 122980586 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 122989146 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 122990357 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122993253 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123006654 . C A 8.64 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.013,0.15,1 PL:DP:SP:GT:GQ 38,0,80:4:0:0/1:41 +chr11 123017102 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 123046594 . C CAAGAGAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123055453 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123059021 . G A 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr11 123063715 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123066378 . t tTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123112343 . A T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 123117568 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 123136266 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 123167695 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 123174437 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123174862 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 123265233 . tt tTGGCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123273176 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 123281434 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 123303378 . T C 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 123336599 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123390406 . G GTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123427243 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 123433293 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 123449768 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123452518 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 123454861 . AAG A 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 123469789 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 123470174 . C T 99 . DP=14;AF1=1;CI95=1,1;DP4=0,1,0,12;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 154,25,0:13:0:1/1:99 +chr11 123477113 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123493523 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 123494587 . G GGATCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123496692 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 123509104 . T C 11.3 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.28,0.066,1 PL:DP:SP:GT:GQ 41,0,49:6:0:0/1:43 +chr11 123509873 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123511241 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123524411 . G A 59 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,0,10,0;MQ=49;PV4=1,2.8e-08,0.11,0.27 PL:DP:SP:GT:GQ 89,0,157:16:0:0/1:92 +chr11 123593103 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123593128 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 123597115 . T C 6.2 . DP=35;AF1=0.4999;CI95=0.5,0.5;DP4=15,3,1,6;MQ=49;PV4=0.0029,0.0058,0.0036,1 PL:DP:SP:GT:GQ 35,0,255:25:25:0/1:38 +chr11 123598941 . T C 99 . DP=77;AF1=0.5;CI95=0.5,0.5;DP4=25,14,15,17;MQ=49;PV4=0.16,3.1e-31,0.0027,0.14 PL:DP:SP:GT:GQ 162,0,255:71:8:0/1:99 +chr11 123614189 . T TGTCCAAAGGACCAAC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 123627104 . G GTAGCATT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 123627519 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 123627796 . T G 42.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=42 PL:DP:SP:GT:GQ 74,6,0:2:0:1/1:49 +chr11 123637200 . G T 3.01 . DP=3;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,1;MQ=42;PV4=1,0.36,0.4,1 PL:DP:SP:GT:GQ 30,0,71:3:0:0/1:33 +chr11 123645198 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123651701 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 123675864 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 123676231 . G T 21 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=4,24,0,12;MQ=49;PV4=0.3,4.7e-07,0.0064,1 PL:DP:SP:GT:GQ 51,0,255:40:5:0/1:54 +chr11 123687219 . g gCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123694057 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 123753937 . A G 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=5,14,6,22;MQ=48;PV4=0.74,2.6e-10,8.2e-11,1 PL:DP:SP:GT:GQ 226,0,255:47:1:0/1:99 +chr11 123754844 . T C 12.3 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,1;MQ=48;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 42,0,36:4:0:0/1:38 +chr11 123777497 . G A 99 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=3,8,10,11;MQ=46;PV4=0.45,0.26,0.0001,1 PL:DP:SP:GT:GQ 255,0,162:32:3:0/1:99 +chr11 123787053 . t tTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123797537 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123847231 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 123847473 . A G 91 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=24,9,13,5;MQ=49;PV4=1,3.5e-13,4.3e-07,1 PL:DP:SP:GT:GQ 121,0,255:51:0:0/1:99 +chr11 123869761 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 123873369 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123882980 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 123886681 . A G 99 . DP=12;AF1=1;CI95=0.5,1;DP4=0,1,4,7;MQ=47;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 188,9,0:12:0:1/1:63 +chr11 123887009 . AC ACACC 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,1;MQ=50;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 41,0,47:3:0:0/1:43 +chr11 123893781 . T A 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=0,4,1,1;MQ=49;PV4=0.33,0.12,0.089,1 PL:DP:SP:GT:GQ 31,0,107:6:0:0/1:34 +chr11 123900890 . C G 6.98 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=6,2,0,4;MQ=49;PV4=0.061,0.092,0.23,1 PL:DP:SP:GT:GQ 36,0,167:12:12:0/1:39 +chr11 123905026 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 123909688 . CA CACGA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=49;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,92:4:0:0/1:41 +chr11 123946058 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 123946086 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123988195 . T G 6.2 . DP=37;AF1=0.4999;CI95=0.5,0.5;DP4=6,3,5,0;MQ=49;PV4=0.26,0.22,1,1 PL:DP:SP:GT:GQ 35,0,118:14:6:0/1:38 +chr11 123988205 . A C 62 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=4,2,4,4;MQ=48;PV4=0.63,1,0.046,0.17 PL:DP:SP:GT:GQ 92,0,73:14:2:0/1:76 +chr11 124005692 . CA CAAA 3.8 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=6,4,0,3;MQ=50;PV4=0.19,0.28,1,0.051 PL:DP:SP:GT:GQ 39,0,239:13:7:0/1:42 +chr11 124007212 . G C 3.58 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,15:2:0:0/1:18 +chr11 124011078 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 124036096 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124036494 . t tGTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124042045 . g gTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124053296 . A T 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124053723 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 124078550 . A G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 124082164 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124111480 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 124121263 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124142660 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 124158985 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 124179656 . G T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr11 124179835 . C T 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=8,10,11,9;MQ=49;PV4=0.75,3.6e-08,0.0021,1 PL:DP:SP:GT:GQ 194,0,255:38:1:0/1:99 +chr11 124180282 . A C 8.64 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,3,3,0;MQ=49;PV4=0.46,0.14,0.0012,1 PL:DP:SP:GT:GQ 38,0,155:9:3:0/1:41 +chr11 124227470 . GA GATCA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 124242136 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124247361 . C T 22 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.00073,0.084,1 PL:DP:SP:GT:GQ 52,0,110:6:0:0/1:55 +chr11 124252249 . A ATACCTT 7.35 . INDEL;DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,30:2:0:0/1:33 +chr11 124252978 . T G 6.2 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,0,4;MQ=48;PV4=0.14,0.0031,1,1 PL:DP:SP:GT:GQ 35,0,78:7:8:0/1:38 +chr11 124253181 . T C 99 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,8;MQ=44;PV4=0.2,0.071,0.0036,1 PL:DP:SP:GT:GQ 146,0,54:10:0:0/1:57 +chr11 124266906 . C T 29 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=8,1,7,0;MQ=42;PV4=1,0.00032,1,1 PL:DP:SP:GT:GQ 59,0,193:16:0:0/1:62 +chr11 124266912 . A G 9.71 . DP=14;AF1=0.5263;CI95=0.5,1;DP4=2,0,2,0;MQ=39;PV4=1,0.41,1,1 PL:DP:SP:GT:GQ 39,0,10:4:0:0/1:13 +chr11 124275233 . TA TACTCTCATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124293767 . G A 30.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 62,6,0:2:0:1/1:49 +chr11 124294703 . T C 3.01 . DP=43;AF1=0.4997;CI95=0.5,0.5;DP4=4,8,0,4;MQ=50;PV4=0.52,7.9e-05,0.0019,1 PL:DP:SP:GT:GQ 30,0,255:16:3:0/1:33 +chr11 124308078 . T A 3.59 . DP=2;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,14:2:0:0/1:17 +chr11 124308998 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124310517 . C A,G 3.98 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=42 PL:DP:SP:GT:GQ 45,18,32,12,0,32:3:0:1/1:49 +chr11 124325444 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124463628 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124487114 . G C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr11 124496632 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 124509892 . T G 4.8 . DP=3;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.43,0.33,0.17 PL:DP:SP:GT:GQ 33,0,16:3:0:0/1:19 +chr11 124543279 . G GGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 124545288 . T C 52 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=10,1,0,11;MQ=48;PV4=3.4e-05,7.5e-06,0.0082,1 PL:DP:SP:GT:GQ 82,0,221:22:45:0/1:85 +chr11 124577803 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 124620859 . C A 39.8 . DP=16;AF1=0.95;CI95=0.5,1;DP4=0,1,0,7;MQ=47;PV4=1,0.16,0.25,0.39 PL:DP:SP:GT:GQ 68,0,0:8:0:1/1:10 +chr11 124626117 . A C 23 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,2,4,0;MQ=49;PV4=0.47,0.15,3.9e-05,1 PL:DP:SP:GT:GQ 53,0,135:10:3:0/1:56 +chr11 124626739 . C CTA 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 124644132 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124661441 . CAGAAGG C 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,70:3:0:0/1:44 +chr11 124668188 . g gTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124697854 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 124742147 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 124749144 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124789755 . T C 99 . DP=47;AF1=1;CI95=1,1;DP4=1,0,10,25;MQ=44;PV4=0.31,1,6e-06,1 PL:DP:SP:GT:GQ 255,89,0:36:0:1/1:99 +chr11 124791739 . tgt tGTGACgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124791789 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 124793682 . T C 99 . DP=41;AF1=1;CI95=1,1;DP4=0,2,9,19;MQ=46;PV4=1,1,0.42,1 PL:DP:SP:GT:GQ 255,43,0:30:0:1/1:99 +chr11 124799279 . G GTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124809100 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 124841549 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124843480 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124863481 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 124868973 . t tTGTGAAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124883034 . A ATCCTGAGTAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 124883596 . T C 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 124934631 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124934634 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124941105 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124949504 . AGCC A 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 124954282 . A G 65 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 98,24,0:8:0:1/1:96 +chr11 124955032 . T C 62.5 . DP=25;AF1=0.8277;CI95=0.5,1;DP4=1,0,6,1;MQ=47;PV4=1,0.32,1,0.34 PL:DP:SP:GT:GQ 91,0,1:8:0:1/1:5 +chr11 124955198 . G GATC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 124955399 . G A 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 124981433 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124984855 . C T 46.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 78,6,0:2:0:1/1:49 +chr11 125009562 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 125013440 . ct cTCTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125024062 . AGA AGACGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125068080 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 125103360 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125124442 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125125277 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 125126233 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125143394 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125149248 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125169023 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 125185418 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125186262 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 125208635 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125281860 . C G 20.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=41 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr11 125298871 . A G 88.1 . DP=20;AF1=1;CI95=1,1;DP4=0,1,14,0;MQ=48;PV4=0.067,1,0.15,1 PL:DP:SP:GT:GQ 121,22,0:15:0:1/1:88 +chr11 125316073 . T A 94 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,5;MQ=46;PV4=1,0.021,9.2e-08,0.33 PL:DP:SP:GT:GQ 124,0,169:10:0:0/1:99 +chr11 125323297 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125326026 . C T 71 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,6,1,11;MQ=49;PV4=0.54,6e-13,0.024,1 PL:DP:SP:GT:GQ 101,0,241:20:3:0/1:99 +chr11 125338134 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125382930 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125436862 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125476453 . C T 21 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.00037,3.4e-05,0.39 PL:DP:SP:GT:GQ 51,0,180:11:0:0/1:54 +chr11 125479363 . G A 99 . DP=61;AF1=1;CI95=1,1;DP4=0,0,30,25;MQ=47 PL:DP:SP:GT:GQ 255,166,0:55:0:1/1:99 +chr11 125479496 . C T 63.3 . DP=36;AF1=1;CI95=0.5,1;DP4=1,0,0,9;MQ=49;PV4=0.1,1,0.23,1 PL:DP:SP:GT:GQ 96,15,0:10:0:1/1:75 +chr11 125479545 . T G 5.46 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 34,0,42:8:0:0/1:36 +chr11 125493521 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125499415 . A G 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 125513922 . A G 4.13 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,0.44,0.067,0.18 PL:DP:SP:GT:GQ 32,0,59:5:0:0/1:35 +chr11 125525195 . A G 53.5 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=48 PL:DP:SP:GT:GQ 86,12,0:4:0:1/1:72 +chr11 125547660 . C G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=13,3,12,1;MQ=48;PV4=0.61,2.9e-07,2.7e-10,1 PL:DP:SP:GT:GQ 137,0,255:29:2:0/1:99 +chr11 125547708 . A G 3.54 . DP=45;AF1=0.4998;CI95=0.5,0.5;DP4=1,20,8,0;MQ=49;PV4=2.1e-06,2.1e-06,1.6e-07,1 PL:DP:SP:GT:GQ 31,0,255:29:57:0/1:34 +chr11 125600023 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125616483 . G T 16.6 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 49,12,0:4:0:1/1:72 +chr11 125617376 . CTTT CTT 14.4 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr11 125617610 . A G 26 . DP=44;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr11 125618731 . T C 7.8 . DP=6;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,2;MQ=44;PV4=1,0.089,1,0.32 PL:DP:SP:GT:GQ 37,0,28:3:0:0/1:30 +chr11 125644021 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125648321 . C T 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0,0,0.24 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr11 125657210 . a aCGT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 125690756 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125763746 . C G 70 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=19,16,9,9;MQ=50;PV4=0.78,6.5e-19,0.0013,0.078 PL:DP:SP:GT:GQ 100,0,255:53:1:0/1:99 +chr11 125766044 . C A 99 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=12,17,27,7;MQ=46;PV4=0.0038,1.9e-10,2.9e-38,1 PL:DP:SP:GT:GQ 255,0,255:63:24:0/1:99 +chr11 125766361 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125770132 . G T 15.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=3,5,5,0;MQ=50;PV4=0.075,0.11,0.092,0.39 PL:DP:SP:GT:GQ 45,0,154:13:11:0/1:48 +chr11 125788936 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125794745 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 125795905 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 125800835 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 125825268 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 125830970 . A T 7.59 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 125859783 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 125861967 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 125864213 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 125864326 . T C 44 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,0.084,0.078,1 PL:DP:SP:GT:GQ 74,0,38:4:0:0/1:41 +chr11 125865100 . a aCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125891269 . C T 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=8,10,6,6;MQ=49;PV4=1,3.2e-09,0.00031,0.12 PL:DP:SP:GT:GQ 148,0,255:30:0:0/1:99 +chr11 125902131 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125926487 . GCC GCCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125966322 . C CTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125983296 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125991317 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 125994576 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126031321 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126045121 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 126053619 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126071410 . T TCTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126071954 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126077417 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126081084 . T C 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 126081403 . T C 80.1 . DP=33;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=49 PL:DP:SP:GT:GQ 113,21,0:7:0:1/1:84 +chr11 126087205 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126122180 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126127536 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 126134928 . C T 56 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=13,7,0,13;MQ=49;PV4=0.00016,0.0056,0.12,1 PL:DP:SP:GT:GQ 86,0,255:33:38:0/1:89 +chr11 126139100 . T C 22.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 55,12,0:4:0:1/1:72 +chr11 126141083 . GA GATA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 126146201 . t tCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126146337 . G A 8.64 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=10,23,3,3;MQ=49;PV4=0.38,1.8e-13,1.7e-09,0.44 PL:DP:SP:GT:GQ 38,0,255:39:4:0/1:41 +chr11 126148432 . T C 54.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=47 PL:DP:SP:GT:GQ 87,12,0:4:0:1/1:72 +chr11 126174038 . C T 96 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=6,0,13,0;MQ=48;PV4=1,9.9e-09,0.0038,0.13 PL:DP:SP:GT:GQ 126,0,155:19:0:0/1:99 +chr11 126176578 . G A 5.31 . DP=36;AF1=0.6242;CI95=0.5,1;DP4=0,1,2,1;MQ=49;PV4=1,1,1,0.19 PL:DP:SP:GT:GQ 33,0,4:4:0:0/1:6 +chr11 126191650 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126201290 . A G 40 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=7,5,5,2;MQ=49;PV4=0.66,3.7e-07,0.021,0.42 PL:DP:SP:GT:GQ 70,0,255:19:2:0/1:73 +chr11 126201403 . T C 99 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=13,10,9,12;MQ=49;PV4=0.55,1.9e-10,0.023,1 PL:DP:SP:GT:GQ 164,0,255:44:3:0/1:99 +chr11 126201458 . A G 12.3 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=3,14,0,7;MQ=50;PV4=0.53,2.3e-08,0.08,1 PL:DP:SP:GT:GQ 42,0,255:24:3:0/1:45 +chr11 126203590 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126209707 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126213341 . G T 39 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,6;MQ=49;PV4=1,4.1e-06,0.013,0.28 PL:DP:SP:GT:GQ 69,0,205:15:0:0/1:72 +chr11 126214139 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126226455 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126239951 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 126255047 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 126257965 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126262388 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126312183 . a aCGGTCTTGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126317462 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126320214 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 126326971 . CAGG CAGGTTAGG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126326989 . A T 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126346689 . C A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126365492 . GAT GATAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126366481 . C CACATCACGCAGCGA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 126368038 . G GAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126370714 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 126389431 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 126398732 . GG GGATAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126410328 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126420675 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126430163 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126438999 . G GTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126459372 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126461758 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 126467785 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 126479562 . t tACGGACACACC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126479580 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126485101 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126521429 . T A 3.02 . DP=2;AF1=0.501;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,23:2:0:0/1:25 +chr11 126527512 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126529595 . AGCTT A 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 126561179 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126578029 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126585217 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 126588454 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126596817 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 126598564 . GGAA G 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 126629013 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 126631621 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 126637298 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 126642633 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126647520 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 126679165 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126719659 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126730577 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126733579 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126756852 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126784407 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126794109 . cct cCTct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126819768 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 126868513 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 126879972 . T TGACCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126898157 . c cTGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126939248 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 126947711 . T C 3.78 . DP=2;AF1=0.5552;CI95=0.5,1;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,7:2:0:0/1:10 +chr11 126978958 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 126994417 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 127019456 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127057660 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 127070845 . C CCG 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 127072110 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 127081431 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 127084929 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127094004 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 127098904 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 127104276 . TT TTCCAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 127120118 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127176465 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 127230376 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 127238526 . atct a 93 . INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 133,12,0:4:0:1/1:72 +chr11 127238529 . ta tATTTAa 7.49 . INDEL;DP=4;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 127239351 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127264424 . c cGGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 127296133 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 127304542 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 127305884 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127306289 . gtccc g 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 127311016 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 127321602 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 127353636 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127418576 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127436095 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 127534203 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 127616950 . t tCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 127625446 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127630741 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127657046 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127667497 . ccta c 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 127668834 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127708027 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 127733542 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127746319 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127749331 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 127752812 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 127796247 . GA GAGTGCCGCAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 127805643 . t tGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 127834857 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 127837613 . T TGCGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 127851398 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127874139 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 127890079 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127900846 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 127917719 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 127922254 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 127950528 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127957248 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 127979938 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 127984751 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128003928 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 128016429 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 128018084 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128027219 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128052273 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 128076525 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128082409 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 128167946 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128170402 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 128195615 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128227210 . GT GTAATCTCTCTCACCT 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 128260283 . CAGCAG C 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128261489 . c cCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128277535 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 128284887 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 128291615 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128310875 . t tACGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128313423 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128332152 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128333503 . T C 99 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=22,15,12,12;MQ=49;PV4=0.6,5.1e-18,0.0006,1 PL:DP:SP:GT:GQ 154,0,255:61:2:0/1:99 +chr11 128337485 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 128337684 . AA AATTACCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128346697 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 128351352 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128354626 . AATA AATACATA 7.35 . INDEL;DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,32:2:0:0/1:35 +chr11 128355762 . TGGT TGGTTTCGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128360590 . CA CATA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 128369765 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128403450 . T G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 128418807 . C CTGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128454798 . g gCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128507655 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128554331 . A AACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128589235 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 128603321 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128603797 . C G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128605301 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128611550 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 128624513 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128634938 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128661405 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128665256 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128683307 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 128698807 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 128703012 . CT CTTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128712389 . T G 32 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 +chr11 128716591 . TGA TGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128730310 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 128775860 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128781339 . T C 87 . DP=23;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=48 PL:DP:SP:GT:GQ 120,54,0:18:0:1/1:99 +chr11 128781855 . C T 15.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,0;MQ=49;PV4=0.1,0.0027,0.079,1 PL:DP:SP:GT:GQ 45,0,110:6:10:0/1:48 +chr11 128781902 . A G 22 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,6,5,0;MQ=48;PV4=0.0022,0.00072,0.025,1 PL:DP:SP:GT:GQ 52,0,162:11:27:0/1:55 +chr11 128781978 . T G 47 . DP=43;AF1=0.6671;CI95=0.5,1;DP4=2,0,6,4;MQ=47;PV4=0.52,0.14,0.25,1 PL:DP:SP:GT:GQ 76,0,3:12:3:0/1:5 +chr11 128782002 . T C 99 . DP=49;AF1=1;CI95=1,1;DP4=0,0,24,5;MQ=45 PL:DP:SP:GT:GQ 255,84,0:29:0:1/1:99 +chr11 128782012 . C G 45.3 . DP=56;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:DP:SP:GT:GQ 78,15,0:5:0:1/1:75 +chr11 128782112 . C T 55 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,15,0,20;MQ=49;PV4=0.2,4e-14,0.036,1 PL:DP:SP:GT:GQ 85,0,255:37:7:0/1:88 +chr11 128782214 . G A 44.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 77,12,0:4:0:1/1:72 +chr11 128786294 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,21,1;MQ=44 PL:DP:SP:GT:GQ 255,66,0:22:0:1/1:99 +chr11 128786529 . GCT GCTCT 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,43:2:0:0/1:40 +chr11 128789279 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128803283 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128803908 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128810566 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 128811422 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 128813114 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128818409 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 128839029 . G A 23 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=14,2,14,0;MQ=50;PV4=0.49,2.1e-11,0.15,1 PL:DP:SP:GT:GQ 53,0,255:30:3:0/1:56 +chr11 128843249 . T C 27 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=49;PV4=1,0.18,0.041,1 PL:DP:SP:GT:GQ 57,0,75:10:0:0/1:60 +chr11 128846547 . C A 5.79 . DP=11;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,3;MQ=50;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 33,0,1:4:0:1/1:5 +chr11 128847387 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128848714 . C A 9.52 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=20,4,0,8;MQ=50;PV4=4.7e-05,9.1e-07,7.7e-07,1 PL:DP:SP:GT:GQ 39,0,255:32:43:0/1:42 +chr11 128863095 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128868239 . T C 30.4 . DP=42;AF1=0.5554;CI95=0.5,1;DP4=0,1,1,4;MQ=49;PV4=1,0.19,0.35,1 PL:DP:SP:GT:GQ 60,0,7:6:0:0/1:10 +chr11 128874962 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128874975 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128891451 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128923775 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128931209 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128998466 . CC CCGC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 129033882 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129074558 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 129110068 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 129163411 . tGT t 3.25 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 129184804 . C CGAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 129185580 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 129189197 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 129195278 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 129238788 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 129238793 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 129243534 . A ACCATTCTGGC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 129296168 . C T 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 129307007 . C A 26 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.036,0.22,1 PL:DP:SP:GT:GQ 56,0,43:6:0:0/1:46 +chr11 129307007 . CCA CCACA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.19 PL:DP:SP:GT:GQ 41,0,50:3:0:0/1:43 +chr11 129309903 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 129321026 . C T 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=44 PL:DP:SP:GT:GQ 193,27,0:9:0:1/1:99 +chr11 129321066 . C T 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=44 PL:DP:SP:GT:GQ 158,24,0:8:0:1/1:96 +chr11 129330225 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 129362977 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129381595 . ggtgt gGTGTGAgtgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129477739 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 129499025 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129509351 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 129532787 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 129546764 . t tGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129555018 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 129557779 . A AAGTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129576018 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 129577666 . aga aGAGTGAGGCTga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129580668 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 129594611 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 129596186 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 129642514 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 129695102 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 129727122 . G T 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.11,0.0001,1 PL:DP:SP:GT:GQ 36,0,84:6:0:0/1:39 +chr11 129728532 . AG AGTCCTG 7.35 . INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 129735052 . C A 7.8 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,0.018,0.2,1 PL:DP:SP:GT:GQ 37,0,99:8:0:0/1:40 +chr11 129738475 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 129744252 . T C 6.79 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 129753945 . G A 23 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,0,8,0;MQ=50;PV4=1,3.8e-12,0.16,1 PL:DP:SP:GT:GQ 53,0,124:12:0:0/1:56 +chr11 129754103 . T TG 21.3 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr11 129754644 . A G 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=46 PL:DP:SP:GT:GQ 144,24,0:8:0:1/1:96 +chr11 129754668 . T C 90 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=6,12,7,7;MQ=49;PV4=0.47,4.2e-09,0.0077,0.48 PL:DP:SP:GT:GQ 120,0,255:32:3:0/1:99 +chr11 129772172 . T C 78 . DP=28;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=48 PL:DP:SP:GT:GQ 111,66,0:22:0:1/1:99 +chr11 129785816 . AAACTAAC AAAC 72.5 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 110,0,79:6:0:0/1:82 +chr11 129787081 . C G 56 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=2,8,0,7;MQ=48;PV4=0.49,0.14,0.00017,1 PL:DP:SP:GT:GQ 86,0,196:17:3:0/1:89 +chr11 129794950 . T C 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,11,6;MQ=48 PL:DP:SP:GT:GQ 213,51,0:17:0:1/1:99 +chr11 129795061 . CA CAGA 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,43:4:0:0/1:40 +chr11 129798731 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129801043 . C T 3.03 . DP=43;AF1=0.5029;CI95=0.5,0.5;DP4=0,1,1,1;MQ=49;PV4=1,0.29,0.33,1 PL:DP:SP:GT:GQ 30,0,19:3:0:0/1:22 +chr11 129802018 . T C 46.2 . DP=40;AF1=1;CI95=0.5,1;DP4=0,1,1,6;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 78,8,0:8:0:1/1:56 +chr11 129807462 . T C 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,21,0;MQ=45 PL:DP:SP:GT:GQ 182,63,0:21:0:1/1:99 +chr11 129809936 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129814727 . C T 4.15 . DP=23;AF1=0.5049;CI95=0.5,0.5;DP4=1,0,0,2;MQ=47;PV4=0.33,0.23,0.33,1 PL:DP:SP:GT:GQ 32,0,17:3:0:0/1:20 +chr11 129817221 . A G 99 . DP=42;AF1=1;CI95=1,1;DP4=1,0,24,10;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 255,85,0:35:0:1/1:99 +chr11 129830796 . C T 86 . DP=23;AF1=1;CI95=1,1;DP4=0,0,13,2;MQ=49 PL:DP:SP:GT:GQ 119,45,0:15:0:1/1:99 +chr11 129833278 . A T 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 129851930 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 129866535 . TAG TAGAGTTGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129907801 . A T 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 130007181 . A C 6.98 . DP=31;AF1=0.4999;CI95=0.5,0.5;DP4=1,13,5,0;MQ=49;PV4=0.00052,0.013,0.00013,1 PL:DP:SP:GT:GQ 36,0,226:19:33:0/1:39 +chr11 130012540 . g gGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 130020631 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130043460 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130058606 . TG TGTCCGACTAG 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,105:4:0:0/1:41 +chr11 130064223 . A G 17.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 130064647 . G A 4.77 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=44;PV4=1,0.17,1,1 PL:DP:SP:GT:GQ 33,0,62:4:0:0/1:36 +chr11 130066335 . C T 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=43 PL:DP:SP:GT:GQ 184,27,0:9:0:1/1:99 +chr11 130069580 . CCTC CCTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130078211 . A G 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,40:2:0:0/1:38 +chr11 130078535 . GCA G 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 130082775 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130112338 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 130128566 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130140475 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130144427 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 130165697 . G C 77.5 . DP=32;AF1=1;CI95=0.5,1;DP4=1,0,7,2;MQ=49;PV4=1,0.35,0.23,0.4 PL:DP:SP:GT:GQ 109,7,0:10:0:1/1:57 +chr11 130178139 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130180986 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130228803 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 130242064 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130249453 . AACG A 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 130278210 . C T 28.8 . DP=3;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,1;MQ=46;PV4=1,1,0.042,1 PL:DP:SP:GT:GQ 58,0,4:3:0:0/1:6 +chr11 130281488 . G A 99 . DP=56;AF1=1;CI95=1,1;DP4=0,1,15,34;MQ=43;PV4=1,1,0.00017,1 PL:DP:SP:GT:GQ 255,125,0:50:0:1/1:99 +chr11 130286766 . G A 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,41,2;MQ=49 PL:DP:SP:GT:GQ 179,129,0:43:0:1/1:99 +chr11 130287035 . AGGG A 7.42 . INDEL;DP=6;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr11 130307972 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 130308444 . t tAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130310402 . GA GACAATTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130325760 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130333051 . T TGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130339193 . C G 7.25 . DP=9;AF1=0.543;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.46,0.42 PL:DP:SP:GT:GQ 36,0,8:3:0:0/1:11 +chr11 130359388 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130364235 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130364248 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130373838 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130395122 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130397746 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 130417076 . G A 36 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,1;MQ=47;PV4=0.4,0.18,0,1 PL:DP:SP:GT:GQ 66,0,102:5:0:0/1:69 +chr11 130436678 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 130449790 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130450627 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 130512466 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130512478 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130523876 . A T 3.02 . DP=2;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,25:2:0:0/1:27 +chr11 130581235 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 130586443 . CC CCGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130587047 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130589590 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 130598432 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130645239 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 130688891 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 130701034 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130706276 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130719551 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 130720814 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 130773177 . C G 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=49;PV4=1,0.062,1,1 PL:DP:SP:GT:GQ 41,0,128:10:0:0/1:44 +chr11 130774058 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130776454 . A G 13.2 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=9,0,2,0;MQ=49;PV4=1,0.15,0,1 PL:DP:SP:GT:GQ 43,0,201:11:0:0/1:46 +chr11 130781697 . C A 34 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,3,0,6;MQ=48;PV4=0.18,0.49,0.028,1 PL:DP:SP:GT:GQ 64,0,73:11:7:0/1:66 +chr11 130784418 . C G 5.46 . DP=36;AF1=0.4999;CI95=0.5,0.5;DP4=13,10,0,5;MQ=48;PV4=0.044,0.022,3.9e-05,1 PL:DP:SP:GT:GQ 34,0,255:28:14:0/1:37 +chr11 130785222 . G T 6.98 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,2,0;MQ=48;PV4=1,0.16,0.35,0.17 PL:DP:SP:GT:GQ 36,0,52:4:0:0/1:39 +chr11 130820684 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 130850756 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130850768 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130872843 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130907679 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 130908792 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130911349 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 130922553 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130926966 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130936502 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130936947 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130943272 . gt gTCTGTTCAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130969825 . gttt g 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130970009 . AA AAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130970133 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130978860 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 131002736 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 131011497 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131021765 . A G 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr11 131022606 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 131023080 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131035359 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 131049868 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 131062321 . TA TACTCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131065544 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131071801 . GGGATC G 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131081389 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 131085711 . C CGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 131088271 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131107674 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131159113 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 131160225 . T TCGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 131172986 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131249630 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 131282170 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131290855 . TGGCC T 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 131311353 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 131349510 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131350565 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131352045 . a aGTG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 131355252 . G GCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131373609 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131412159 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131414441 . A AGACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131420989 . T G 32 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 +chr11 131432879 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 131445190 . AG AGTCGTGTGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131462503 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131462508 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131462603 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 131466590 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131481546 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131495407 . A T 3.04 . DP=2;AF1=0.5048;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,17:2:0:0/1:20 +chr11 131498882 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131524082 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 131525360 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 131536114 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131550425 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131557474 . G GGACTGTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131570267 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 131579003 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 131604403 . a aCTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131608988 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131625498 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131628325 . T TCACTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131661730 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131678528 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131692138 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 131709501 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 131728121 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131740491 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131740721 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131773732 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 131781634 . G A 19 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr11 131799218 . gggg gGGGTggg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131826223 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 131852245 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131879326 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131888020 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 131901585 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 131909573 . C CATGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131919459 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131919742 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131929156 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131965423 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 131998265 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 132015052 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 132025636 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 132030775 . GG GGCTTTAACAAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132060094 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 132070269 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132081873 . G A 54 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=6,0,5,0;MQ=48;PV4=1,0.00018,0.007,1 PL:DP:SP:GT:GQ 84,0,170:11:0:0/1:87 +chr11 132089557 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 132097935 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 132144542 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132174567 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 132177740 . G T 84 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=7,4,1,14;MQ=49;PV4=0.0033,0.00078,0.024,0.47 PL:DP:SP:GT:GQ 114,0,233:26:25:0/1:99 +chr11 132183851 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132184394 . G C 66 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,0,8,0;MQ=48;PV4=1,1.5e-07,9e-05,1 PL:DP:SP:GT:GQ 96,0,180:15:0:0/1:99 +chr11 132196423 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132210233 . T TTGGGGTGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132226048 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132229854 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132243299 . c cATCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132294851 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132302392 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132311990 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 132312436 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 132320174 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132321984 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132341215 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 132362861 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132368453 . T TCGCCCTCTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132465651 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 132475675 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132523275 . CGCT C 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 132528623 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132542623 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132552879 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132603157 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132615416 . T TCAGCGAGGAGTGGCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132616255 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132619578 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 132623858 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132652595 . ACTT ACTTTTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132692024 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132745188 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 132747467 . A AGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132778175 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 132793845 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 132830540 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132839423 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 132848016 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 132853867 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 132876713 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133042394 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 133046822 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 133062552 . g gAAAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133075302 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 133094148 . T TGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133135673 . T TCACATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133155074 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133213810 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133222376 . T TGAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133226423 . G GTATTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133234924 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133236168 . CCTGC CC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 133237850 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 133256888 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 133269469 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 133286099 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133296056 . T TCTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133299878 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 133352971 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 133389368 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 133394550 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133400430 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 133400483 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 133425393 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 133432106 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133433522 . GC GCTC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 133437934 . a aGCACGTTAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133442843 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 133445440 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133532182 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133554523 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133588369 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133596659 . CG CGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133598784 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133601023 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133608945 . g gCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133609221 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133632077 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133656003 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133681464 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133681849 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 133712473 . C T 20 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,5;MQ=49;PV4=1,2.3e-06,0.0027,1 PL:DP:SP:GT:GQ 50,0,214:15:0:0/1:53 +chr11 133714672 . A G 12.3 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.099,0.29,1 PL:DP:SP:GT:GQ 42,0,41:3:0:0/1:41 +chr11 133733627 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 133735327 . T A 5.46 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,1,2;MQ=38;PV4=1,0.1,0.016,0.02 PL:DP:SP:GT:GQ 34,0,117:7:0:0/1:37 +chr11 133760326 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133780082 . G C 24.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=42 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 133783025 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 133901512 . C CAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 133906538 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133911330 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133926332 . T TGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 133953120 . TG TGTGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133995808 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 134010534 . T C 3.54 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,0.028,0.24,0.43 PL:DP:SP:GT:GQ 31,0,129:9:0:0/1:34 +chr11 134010647 . T G 15.1 . DP=15;AF1=0.5004;CI95=0.5,0.5;DP4=1,1,0,3;MQ=47;PV4=0.4,1,0.46,1 PL:DP:SP:GT:GQ 45,0,28:5:0:0/1:31 +chr11 134014673 . C CCT 89.5 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=10,0,5,1;MQ=50;PV4=0.37,1,1,0.38 PL:DP:SP:GT:GQ 127,0,157:16:0:0/1:99 +chr11 134018656 . T C 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=12,8,7,8;MQ=49;PV4=0.51,1.8e-17,0.27,1 PL:DP:SP:GT:GQ 139,0,255:35:3:0/1:99 +chr11 134018980 . G A 53 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,0,9,0;MQ=49;PV4=1,5.8e-11,0.017,1 PL:DP:SP:GT:GQ 83,0,180:16:0:0/1:86 +chr11 134031836 . CA CAAA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 134032506 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134035051 . A T 4.13 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,30:2:0:0/1:31 +chr11 134046907 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134047838 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134048888 . C A 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,1,0.029,0.02 PL:DP:SP:GT:GQ 31,0,39:3:0:0/1:33 +chr11 134056092 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 134064412 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 134064527 . TTAAAAAAAAAAAT TCGTAAAAAAAAAAAT 7.35 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,37:2:0:0/1:39 +chr11 134067603 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134081792 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134097472 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134120104 . TC TCGTGAC 8.19 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 134152030 . G A 18 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr11 134154092 . AT ATGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 134158384 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 134211029 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134226278 . C T 59 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=2,16,1,14;MQ=49;PV4=1,1.6e-09,5.4e-06,1 PL:DP:SP:GT:GQ 89,0,255:33:0:0/1:92 +chr11 134230133 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134234413 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134237113 . C A 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,5,0;MQ=50;PV4=1,1.6e-05,0.15,1 PL:DP:SP:GT:GQ 32,0,165:11:0:0/1:35 +chr11 134251777 . C A 33.3 . DP=23;AF1=0.543;CI95=0.5,1;DP4=1,0,10,0;MQ=50;PV4=1,0.00013,0.32,0.39 PL:DP:SP:GT:GQ 63,0,8:11:0:0/1:11 +chr11 134279356 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134297991 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 134317102 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134325175 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134341898 . GGT GGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 134359842 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 134371792 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134384141 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134386772 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 134391945 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134392155 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134404662 . c cTAA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 134429601 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134468318 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 134478998 . AA AATAGCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134483554 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134485800 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 134493164 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134517762 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134521397 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134547336 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134560146 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 134569383 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 134615325 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 134633468 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 134645286 . ct cTATt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 134682259 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 134685324 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134707657 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134727740 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134747997 . GTTA G 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 134752848 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134770250 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134775601 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134782728 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 134802294 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134834091 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134837938 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134839555 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 134909273 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134912827 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134922620 . t tCA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134924768 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11_gl000202_random 7708 . G T 29 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=60 PL:DP:SP:GT:GQ 59,3,0:1:0:1/1:41
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/a.tab Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,15 @@ +CHR SNP BP A1 TEST NMISS BETA STAT P +1 rs1181876 3671541 T DOMDEV 958 -1.415 -3.326 0.0009161 +1 rs10492923 5092886 C ADD 1007 5.105 4.368 1.382e-05 +1 rs10492923 5092886 C DOMDEV 1007 -5.612 -4.249 2.35e-05 +1 rs10492923 5092886 C GENO_2DF 1007 NA 19.9 4.775e-05 +1 rs1801133 11778965 T ADD 1022 1.23 3.97 7.682e-05 +1 rs1801133 11778965 T GENO_2DF 1022 NA 16.07 0.0003233 +1 rs1361912 12663121 A ADD 1021 12.69 4.093 4.596e-05 +1 rs1361912 12663121 A DOMDEV 1021 -12.37 -3.945 8.533e-05 +1 rs1361912 12663121 A GENO_2DF 1021 NA 17.05 0.0001982 +1 rs1009806 19373138 G ADD 1021 -1.334 -3.756 0.0001826 +1 rs1009806 19373138 G GENO_2DF 1021 NA 19.36 6.244e-05 +1 rs873654 29550948 A DOMDEV 1012 1.526 3.6 0.0003339 +1 rs10489527 36800027 C ADD 1016 12.67 4.114 4.211e-05 +1 rs10489527 36800027 C DOMDEV 1016 -13.05 -4.02 6.249e-05
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gatk/fake_phiX_variant_locations.vcf Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,70 @@ +##fileformat=VCFv4.1 +##samtoolsVersion=0.1.18 (r982:295) +##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth"> +##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> +##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads"> +##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same"> +##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)"> +##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)"> +##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies"> +##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3"> +##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint"> +##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio"> +##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio"> +##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias"> +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> +##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2."> +##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples."> +##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2."> +##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2."> +##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> +##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases"> +##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value"> +##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A Fake phiX Sample +phiX174 1411 . A . 28.2 . DP=1;;AC1=2;FQ=-30 PL 0 +phiX174 1412 . G . 28.2 . DP=3;;AC1=2;FQ=-30 PL 0 +phiX174 1413 . C . 28.2 . DP=5;;AC1=2;FQ=-30 PL 0 +phiX174 1414 . G . 28.2 . DP=6;;AC1=2;FQ=-30 PL 0 +phiX174 1415 . C . 28.2 . DP=7;;AC1=2;FQ=-30 PL 0 +phiX174 1416 . C . 28.2 . DP=8;;AC1=2;FQ=-30 PL 0 +phiX174 1417 . G . 28.2 . DP=9;;AC1=2;FQ=-30 PL 0 +phiX174 1418 . T . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1419 . G . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1420 . G . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1421 . A . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1422 . T . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1423 . G . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1424 . C . 28.2 . DP=10;VDB=0.0005;;AC1=2;FQ=-30 PL 0 +phiX174 1425 . C . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1426 . T . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1427 . G . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1428 . A . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1429 . C . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1430 . C . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1431 . G . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1432 . T . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1433 . A . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1434 . C . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1435 . C . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1436 . G . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1437 . A . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1438 . G . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1439 . G . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1440 . C . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1441 . T . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1442 . A . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1443 . A . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1444 . C . 28.2 . DP=7;;AC1=2;FQ=-30 PL 0 +phiX174 1445 . C . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1446 . C . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1447 . T . 28.2 . DP=10;;AC1=2;FQ=-30 PL 0 +phiX174 1448 . A . 28.2 . DP=8;;AC1=2;FQ=-30 PL 0 +phiX174 1449 . A . 28.2 . DP=6;;AC1=2;FQ=-30 PL 0 +phiX174 1450 . T . 28.2 . DP=4;;AC1=2;FQ=-30 PL 0 +phiX174 1451 . G . 28.2 . DP=3;;AC1=2;FQ=-30 PL 0 +phiX174 1452 . A . 28.2 . DP=2;;AC1=2;FQ=-30 PL 0 +phiX174 1453 . G . 28.2 . DP=1;;AC1=2;FQ=-30 PL 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,12 @@ +Program Args: -T UnifiedGenotyper +GenomeAnalysisEngine - Strictness is SILENT +TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] +TraversalEngine - Location processed.sites runtime per.1M.sites completed total.runtime remaining +UnifiedGenotyper - Visited bases 5387 +UnifiedGenotyper - Callable bases 5344 +UnifiedGenotyper - Confidently called bases 5344 +UnifiedGenotyper - % callable bases of all loci 99.202 +UnifiedGenotyper - % confidently called bases of all loci 99.202 +UnifiedGenotyper - % confidently called bases of callable loci 100.000 +UnifiedGenotyper - Actual calls made 1 +TraversalEngine - Total runtime
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.metrics Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,7 @@ +Visited bases 5387 +Callable bases 5344 +Confidently called bases 5344 +% callable bases of all loci 99.202 +% confidently called bases of all loci 99.202 +% confidently called bases of callable loci 100.000 +Actual calls made 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.vcf Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,28 @@ +##fileformat=VCFv4.1 +##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)"> +##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification"> +##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> +##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed"> +##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> +##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities"> +##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered"> +##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?"> +##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions"> +##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias"> +##INFO=<ID=HRun,Number=1,Type=Integer,Description="Largest Contiguous Homopolymer Run of Variant Allele In Either Direction"> +##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes"> +##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation"> +##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality"> +##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads"> +##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities"> +##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth"> +##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias"> +##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/var/folders/78/786YaG3QH58XnzrWynoDBk+++TI/-Tmp-/tmp-gatk-aSMuO5/gatk_input_0.bam] sample_metadata=[] read_buffer_size=null phone_home=NO_ET read_filter=[] intervals=null excludeIntervals=null reference_sequence=/var/folders/78/786YaG3QH58XnzrWynoDBk+++TI/-Tmp-/tmp-gatk-aSMuO5/gatk_input.fasta rodBind=[] rodToIntervalTrackName=null BTI_merge_rule=UNION nonDeterministicRandomSeed=false downsampling_type=null downsample_to_fraction=null downsample_to_coverage=null baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=4 interval_merging=ALL read_group_black_list=null processingTracker=null restartProcessingTracker=false processingTrackerStatusFile=null processingTrackerID=-1 allow_intervals_with_unindexed_bam=false disable_experimental_low_memory_sharding=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=BOTH p_nonref_model=EXACT heterozygosity=0.0010 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_CONFIDENT_SITES standard_min_confidence_threshold_for_calling=0.0 standard_min_confidence_threshold_for_emitting=4.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) assume_single_sample_reads=null abort_at_too_much_coverage=-1 min_base_quality_score=17 min_mapping_quality_score=20 max_deletion_fraction=-1.0 min_indel_count_for_genotyping=2 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=3.0 indelHaplotypeSize=80 doContextDependentGapPenalties=true getGapPenaltiesFromData=false indel_recal_file=indel.recal_data.csv indelDebug=false dovit=false GSA_PRODUCTION_ONLY=false exactCalculation=LINEAR_EXPERIMENTAL ignoreSNPAlleles=false output_all_callable_bases=false genotype=false dbsnp=(RodBinding name=dbsnp source=/var/folders/78/786YaG3QH58XnzrWynoDBk+++TI/-Tmp-/tmp-gatk-aSMuO5/input_dbsnp_0.vcf) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null annotation=[]" +##contig=<ID=phiX174,length=5386> +##reference=file:///var/folders/78/786YaG3QH58XnzrWynoDBk+++TI/-Tmp-/tmp-gatk-aSMuO5/gatk_input.fasta +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A Fake phiX Sample +phiX174 1443 . AC . 0 . DB;DP=10;MQ=37.74;MQ0=0 GT ./.
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/phiX.fasta Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,79 @@ +>phiX174 +GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT +GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA +ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG +TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA +GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC +TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT +TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT +CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT +TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG +TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC +GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA +CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG +TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT +AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC +CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA +TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC +TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA +CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA +GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT +GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA +ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC +TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT +TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC +ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAAC +CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT +GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC +CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC +TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG +TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT +TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA +AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT +TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT +ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC +GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC +TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT +TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA +TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG +TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC +CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG +AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC +CGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT +TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG +CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA +AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT +GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG +GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA +TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT +CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG +TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA +GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC +CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA +TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA +AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC +TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT +CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA +TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG +TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT +CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT +TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC +ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG +TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA +ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG +GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC +CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT +GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAG +GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT +ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG +CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC +CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC +GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT +CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG +CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA +TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT +TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG +TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC +AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC +TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/gatk_annotations.txt.sample Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,30 @@ +#unique_id name gatk_value tools_valid_for +AlleleBalance AlleleBalance AlleleBalance UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +AlleleBalanceBySample AlleleBalanceBySample AlleleBalanceBySample UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +BaseCounts BaseCounts BaseCounts UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +BaseQualityRankSumTest BaseQualityRankSumTest BaseQualityRankSumTest UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +ChromosomeCounts ChromosomeCounts ChromosomeCounts UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +DepthOfCoverage DepthOfCoverage DepthOfCoverage UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +DepthPerAlleleBySample DepthPerAlleleBySample DepthPerAlleleBySample UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +FisherStrand FisherStrand FisherStrand UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +GCContent GCContent GCContent UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +HaplotypeScore HaplotypeScore HaplotypeScore UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +HardyWeinberg HardyWeinberg HardyWeinberg UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +HomopolymerRun HomopolymerRun HomopolymerRun UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +InbreedingCoeff InbreedingCoeff InbreedingCoeff UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +IndelType IndelType IndelType UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +LowMQ LowMQ LowMQ UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +MVLikelihoodRatio MVLikelihoodRatio MVLikelihoodRatio UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +MappingQualityRankSumTest MappingQualityRankSumTest MappingQualityRankSumTest UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +MappingQualityZero MappingQualityZero MappingQualityZero UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +MappingQualityZeroBySample MappingQualityZeroBySample MappingQualityZeroBySample UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +MappingQualityZeroFraction MappingQualityZeroFraction MappingQualityZeroFraction UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +NBaseCount NBaseCount NBaseCount UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +QualByDepth QualByDepth QualByDepth UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +RMSMappingQuality RMSMappingQuality RMSMappingQuality UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +ReadDepthAndAllelicFractionBySample ReadDepthAndAllelicFractionBySample ReadDepthAndAllelicFractionBySample UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +ReadPosRankSumTest ReadPosRankSumTest ReadPosRankSumTest UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +SampleList SampleList SampleList UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +SnpEff SnpEff SnpEff VariantAnnotator,VariantRecalibrator +SpanningDeletions SpanningDeletions SpanningDeletions UnifiedGenotyper,VariantAnnotator,VariantRecalibrator +TechnologyComposition TechnologyComposition TechnologyComposition UnifiedGenotyper,VariantAnnotator,VariantRecalibrator
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/gatk_sorted_picard_index.loc.sample Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,26 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of Picard dict and associated files. You will need +#to create these data files and then create a picard_index.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The picard_index.loc +#file has this format (longer white space is the TAB character): +# +#<unique_build_id> <dbkey> <display_name> <fasta_file_path> +# +#So, for example, if you had hg18 indexed and stored in +#/depot/data2/galaxy/srma/hg18/, +#then the srma_index.loc entry would look like this: +# +#hg18 hg18 hg18 Pretty /depot/data2/galaxy/picard/hg18/hg18.fa +# +#and your /depot/data2/galaxy/srma/hg18/ directory +#would contain the following three files: +#hg18.fa +#hg18.dict +#hg18.fa.fai +# +#The dictionary file for each reference (ex. hg18.dict) must be +#created via Picard (http://picard.sourceforge.net). Note that +#the dict file does not have the .fa extension although the +#path list in the loc file does include it. +#
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,13 @@ +<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> +<tables> + <!-- Location of Picard dict files valid for GATK --> + <table name="gatk_picard_indexes" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/gatk_sorted_picard_index.loc" /> + </table> + <!-- Available of GATK references --> + <table name="gatk_annotations" comment_char="#"> + <columns>value, name, gatk_value, tools_valid_for</columns> + <file path="tool-data/gatk_annotations.txt" /> + </table> +</tables>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,9 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="gatk" version="1.4"> + <repository changeset_revision="0cc94f66d00e" name="package_gatk_1_4" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="samtools" version="0.1.18"> + <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/unified_genotyper.xml Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,327 @@ +<tool id="gatk_unified_genotyper" name="Unified Genotyper" version="0.0.6"> + <description>SNP and indel caller</description> + <requirements> + <requirement type="package" version="1.4">gatk</requirement> + <requirement type="package" version="0.1.18">samtools</requirement> + </requirements> + <macros> + <import>gatk_macros.xml</import> + </macros> + <command interpreter="python">gatk_wrapper.py + --max_jvm_heap_fraction "1" + --stdout "${output_log}" + #for $i, $input_bam in enumerate( $reference_source.input_bams ): + -d "-I" "${input_bam.input_bam}" "${input_bam.input_bam.ext}" "gatk_input_${i}" + #if str( $input_bam.input_bam.metadata.bam_index ) != "None": + -d "" "${input_bam.input_bam.metadata.bam_index}" "bam_index" "gatk_input_${i}" ##hardcode galaxy ext type as bam_index + #end if + #end for + -p 'java + -jar "\$JAVA_JAR_PATH/GenomeAnalysisTK.jar" + -T "UnifiedGenotyper" + --num_threads \${GALAXY_SLOTS:-4} + --out "${output_vcf}" + --metrics_file "${output_metrics}" + -et "NO_ET" ##ET no phone home + ##-log "${output_log}" ##don't use this to log to file, instead directly capture stdout + #if $reference_source.reference_source_selector != "history": + -R "${reference_source.ref_file.fields.path}" + #end if + --genotype_likelihoods_model "${genotype_likelihoods_model}" + --standard_min_confidence_threshold_for_calling "${standard_min_confidence_threshold_for_calling}" + --standard_min_confidence_threshold_for_emitting "${standard_min_confidence_threshold_for_emitting}" + ' + #set $rod_binding_names = dict() + #for $rod_binding in $rod_bind: + #if str( $rod_binding.rod_bind_type.rod_bind_type_selector ) == 'custom': + #set $rod_bind_name = $rod_binding.rod_bind_type.custom_rod_name + #else + #set $rod_bind_name = $rod_binding.rod_bind_type.rod_bind_type_selector + #end if + #set $rod_binding_names[$rod_bind_name] = $rod_binding_names.get( $rod_bind_name, -1 ) + 1 + -d "--dbsnp:${rod_bind_name},%(file_type)s" "${rod_binding.rod_bind_type.input_rod}" "${rod_binding.rod_bind_type.input_rod.ext}" "input_${rod_bind_name}_${rod_binding_names[$rod_bind_name]}" + #end for + + #include source=$standard_gatk_options# + ##start analysis specific options + #if $analysis_param_type.analysis_param_type_selector == "advanced": + -p ' + --p_nonref_model "${analysis_param_type.p_nonref_model}" + --heterozygosity "${analysis_param_type.heterozygosity}" + --pcr_error_rate "${analysis_param_type.pcr_error_rate}" + --genotyping_mode "${analysis_param_type.genotyping_mode_type.genotyping_mode}" + #if str( $analysis_param_type.genotyping_mode_type.genotyping_mode ) == 'GENOTYPE_GIVEN_ALLELES': + --alleles "${analysis_param_type.genotyping_mode_type.input_alleles_rod}" + #end if + --output_mode "${analysis_param_type.output_mode}" + ${analysis_param_type.compute_SLOD} + --min_base_quality_score "${analysis_param_type.min_base_quality_score}" + --max_deletion_fraction "${analysis_param_type.max_deletion_fraction}" + --max_alternate_alleles "${analysis_param_type.max_alternate_alleles}" + --min_indel_count_for_genotyping "${analysis_param_type.min_indel_count_for_genotyping}" + --indel_heterozygosity "${analysis_param_type.indel_heterozygosity}" + --indelGapContinuationPenalty "${analysis_param_type.indelGapContinuationPenalty}" + --indelGapOpenPenalty "${analysis_param_type.indelGapOpenPenalty}" + --indelHaplotypeSize "${analysis_param_type.indelHaplotypeSize}" + ${analysis_param_type.doContextDependentGapPenalties} + #if str( $analysis_param_type.annotation ) != "None": + #for $annotation in str( $analysis_param_type.annotation.fields.gatk_value ).split( ','): + --annotation "${annotation}" + #end for + #end if + #for $additional_annotation in $analysis_param_type.additional_annotations: + --annotation "${additional_annotation.additional_annotation_name}" + #end for + #if str( $analysis_param_type.group ) != "None": + #for $group in str( $analysis_param_type.group ).split( ','): + --group "${group}" + #end for + #end if + #if str( $analysis_param_type.exclude_annotations ) != "None": + #for $annotation in str( $analysis_param_type.exclude_annotations.fields.gatk_value ).split( ','): + --excludeAnnotation "${annotation}" + #end for + #end if + ${analysis_param_type.multiallelic} + ' +## #if str( $analysis_param_type.snpEff_rod_bind_type.snpEff_rod_bind_type_selector ) == 'set_snpEff': +## -p '--annotation "SnpEff"' +## -d "--snpEffFile:${analysis_param_type.snpEff_rod_bind_type.snpEff_rod_name},%(file_type)s" "${analysis_param_type.snpEff_rod_bind_type.snpEff_input_rod}" "${analysis_param_type.snpEff_rod_bind_type.snpEff_input_rod.ext}" "input_snpEff_${analysis_param_type.snpEff_rod_bind_type.snpEff_rod_name}" +## #else: +## -p '--excludeAnnotation "SnpEff"' +## #end if + #end if + </command> + <inputs> + <conditional name="reference_source"> + <expand macro="reference_source_selector_param" /> + <when value="cached"> + <repeat name="input_bams" title="BAM file" min="1" help="-I,--input_file &lt;input_file&gt;"> + <param name="input_bam" type="data" format="bam" label="BAM file"> + <validator type="unspecified_build" /> + <validator type="dataset_metadata_in_data_table" table_name="gatk_picard_indexes" metadata_name="dbkey" metadata_column="dbkey" message="Sequences are not currently available for the specified build." /> <!-- fixme!!! this needs to be a select --> + </param> + </repeat> + <param name="ref_file" type="select" label="Using reference genome" help="-R,--reference_sequence &lt;reference_sequence&gt;"> + <options from_data_table="gatk_picard_indexes"> + <!-- <filter type="data_meta" key="dbkey" ref="input_bam" column="dbkey"/> does not yet work in a repeat...--> + </options> + <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> + </param> + </when> + <when value="history"> <!-- FIX ME!!!! --> + <repeat name="input_bams" title="BAM file" min="1" help="-I,--input_file &lt;input_file&gt;"> + <param name="input_bam" type="data" format="bam" label="BAM file" > + </param> + </repeat> + <param name="ref_file" type="data" format="fasta" label="Using reference file" help="-R,--reference_sequence &lt;reference_sequence&gt;" /> + </when> + </conditional> + + <repeat name="rod_bind" title="Binding for reference-ordered data" help="-D,--dbsnp &lt;dbsnp&gt;"> + <conditional name="rod_bind_type"> + <param name="rod_bind_type_selector" type="select" label="Binding Type"> + <option value="dbsnp" selected="True">dbSNP</option> + <option value="snps">SNPs</option> + <option value="indels">INDELs</option> + <option value="custom">Custom</option> + </param> + <when value="dbsnp"> + <param name="input_rod" type="data" format="vcf" label="ROD file" /> + </when> + <when value="snps"> + <param name="input_rod" type="data" format="vcf" label="ROD file" /> + </when> + <when value="indels"> + <param name="input_rod" type="data" format="vcf" label="ROD file" /> + </when> + <when value="custom"> + <param name="custom_rod_name" type="text" value="Unknown" label="ROD Name"/> + <param name="input_rod" type="data" format="vcf" label="ROD file" /> + </when> + </conditional> + </repeat> + + <param name="genotype_likelihoods_model" type="select" label="Genotype likelihoods calculation model to employ" help="-glm,--genotype_likelihoods_model &lt;genotype_likelihoods_model&gt;"> + <option value="BOTH" selected="True">BOTH</option> + <option value="SNP">SNP</option> + <option value="INDEL">INDEL</option> + </param> + + <param name="standard_min_confidence_threshold_for_calling" type="float" value="30.0" label="The minimum phred-scaled confidence threshold at which variants not at 'trigger' track sites should be called" help="-stand_call_conf,--standard_min_confidence_threshold_for_calling &lt;standard_min_confidence_threshold_for_calling&gt;" /> + <param name="standard_min_confidence_threshold_for_emitting" type="float" value="30.0" label="The minimum phred-scaled confidence threshold at which variants not at 'trigger' track sites should be emitted (and filtered if less than the calling threshold)" help="-stand_emit_conf,--standard_min_confidence_threshold_for_emitting &lt;standard_min_confidence_threshold_for_emitting&gt;" /> + + + <expand macro="gatk_param_type_conditional" /> + + <expand macro="analysis_type_conditional"> + <param name="p_nonref_model" type="select" label="Non-reference probability calculation model to employ" help="-pnrm,--p_nonref_model &lt;p_nonref_model&gt;"> + <option value="EXACT" selected="True">EXACT</option> + <option value="GRID_SEARCH">GRID_SEARCH</option> + </param> + <param name="heterozygosity" type="float" value="1e-3" label="Heterozygosity value used to compute prior likelihoods for any locus" help="-hets,--heterozygosity &lt;heterozygosity&gt;" /> + <param name="pcr_error_rate" type="float" value="1e-4" label="The PCR error rate to be used for computing fragment-based likelihoods" help="-pcr_error,--pcr_error_rate &lt;pcr_error_rate&gt;" /> + <conditional name="genotyping_mode_type"> + <param name="genotyping_mode" type="select" label="How to determine the alternate allele to use for genotyping" help="-gt_mode,--genotyping_mode &lt;genotyping_mode&gt;"> + <option value="DISCOVERY" selected="True">DISCOVERY</option> + <option value="GENOTYPE_GIVEN_ALLELES">GENOTYPE_GIVEN_ALLELES</option> + </param> + <when value="DISCOVERY"> + <!-- Do nothing here --> + </when> + <when value="GENOTYPE_GIVEN_ALLELES"> + <param name="input_alleles_rod" type="data" format="vcf" label="Alleles ROD file" help="-alleles,--alleles &lt;alleles&gt;" /> + </when> + </conditional> + <param name="output_mode" type="select" label="Should we output confident genotypes (i.e. including ref calls) or just the variants?" help="-out_mode,--output_mode &lt;output_mode&gt;"> + <option value="EMIT_VARIANTS_ONLY" selected="True">EMIT_VARIANTS_ONLY</option> + <option value="EMIT_ALL_CONFIDENT_SITES">EMIT_ALL_CONFIDENT_SITES</option> + <option value="EMIT_ALL_SITES">EMIT_ALL_SITES</option> + </param> + <param name="compute_SLOD" type="boolean" truevalue="--computeSLOD" falsevalue="" label="Compute the SLOD" help="--computeSLOD" /> + <param name="min_base_quality_score" type="integer" value="17" label="Minimum base quality required to consider a base for calling" help="-mbq,--min_base_quality_score &lt;min_base_quality_score&gt;" /> + <param name="max_deletion_fraction" type="float" value="0.05" label="Maximum fraction of reads with deletions spanning this locus for it to be callable" help="to disable, set to < 0 or > 1 (-deletions,--max_deletion_fraction &lt;max_deletion_fraction&gt;)" /> + <param name="max_alternate_alleles" type="integer" value="5" label="Maximum number of alternate alleles to genotype" help="-maxAlleles,--max_alternate_alleles &lt;max_alternate_alleles&gt;" /> + <param name="min_indel_count_for_genotyping" type="integer" value="5" label="Minimum number of consensus indels required to trigger genotyping run" help="-minIndelCnt,--min_indel_count_for_genotyping &lt;min_indel_count_for_genotyping&gt;" /> + <param name="indel_heterozygosity" type="float" value="0.000125" label="Heterozygosity for indel calling" help="1.0/8000==0.000125 (-indelHeterozygosity,--indel_heterozygosity &lt;indel_heterozygosity&gt;)"/> + <param name="indelGapContinuationPenalty" type="float" value="10.0" label="Indel gap continuation penalty" help="--indelGapContinuationPenalty" /> + <param name="indelGapOpenPenalty" type="float" value="45.0" label="Indel gap open penalty" help="--indelGapOpenPenalty" /> + <param name="indelHaplotypeSize" type="integer" value="80" label="Indel haplotype size" help="--indelHaplotypeSize" /> + <param name="doContextDependentGapPenalties" type="boolean" truevalue="--doContextDependentGapPenalties" falsevalue="" label="Vary gap penalties by context" help="--doContextDependentGapPenalties" /> + <param name="annotation" type="select" multiple="True" display="checkboxes" label="Annotation Types" help="-A,--annotation &lt;annotation&gt;"> + <!-- load the available annotations from an external configuration file, since additional ones can be added to local installs --> + <options from_data_table="gatk_annotations"> + <filter type="multiple_splitter" column="tools_valid_for" separator=","/> + <filter type="static_value" value="UnifiedGenotyper" column="tools_valid_for"/> + </options> + </param> + <repeat name="additional_annotations" title="Additional annotation" help="-A,--annotation &lt;annotation&gt;"> + <param name="additional_annotation_name" type="text" value="" label="Annotation name" /> + </repeat> +<!-- + <conditional name="snpEff_rod_bind_type"> + <param name="snpEff_rod_bind_type_selector" type="select" label="Provide a snpEff reference-ordered data file"> + <option value="set_snpEff">Set snpEff</option> + <option value="exclude_snpEff" selected="True">Don't set snpEff</option> + </param> + <when value="exclude_snpEff"> + </when> + <when value="set_snpEff"> + <param name="snpEff_input_rod" type="data" format="vcf" label="ROD file" /> + <param name="snpEff_rod_name" type="hidden" value="snpEff" label="ROD Name"/> + </when> + </conditional> +--> + <param name="group" type="select" multiple="True" display="checkboxes" label="Annotation Interfaces/Groups" help="-G,--group &lt;group&gt;"> + <option value="RodRequiringAnnotation">RodRequiringAnnotation</option> + <option value="Standard">Standard</option> + <option value="Experimental">Experimental</option> + <option value="WorkInProgress">WorkInProgress</option> + <option value="RankSumTest">RankSumTest</option> + <!-- <option value="none">none</option> --> + </param> + <!-- <param name="family_string" type="text" value="" label="Family String"/> --> + <param name="exclude_annotations" type="select" multiple="True" display="checkboxes" label="Annotations to exclude" help="-XA,--excludeAnnotation &lt;excludeAnnotation&gt;" > + <!-- load the available annotations from an external configuration file, since additional ones can be added to local installs --> + <options from_data_table="gatk_annotations"> + <filter type="multiple_splitter" column="tools_valid_for" separator=","/> + <filter type="static_value" value="UnifiedGenotyper" column="tools_valid_for"/> + </options> + </param> + <param name="multiallelic" type="boolean" truevalue="--multiallelic" falsevalue="" label="Allow the discovery of multiple alleles (SNPs only)" help="--multiallelic" /> + </expand> + </inputs> + <outputs> + <data format="vcf" name="output_vcf" label="${tool.name} on ${on_string} (VCF)" /> + <data format="txt" name="output_metrics" label="${tool.name} on ${on_string} (metrics)" /> + <data format="txt" name="output_log" label="${tool.name} on ${on_string} (log)" /> + </outputs> + <trackster_conf/> + <tests> + <test> + <param name="reference_source_selector" value="history" /> + <param name="ref_file" value="phiX.fasta" ftype="fasta" /> + <param name="input_bam" value="gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.bam" ftype="bam" /> + <param name="rod_bind_type_selector" value="dbsnp" /> + <param name="input_rod" value="gatk/fake_phiX_variant_locations.vcf" ftype="vcf" /> + <param name="standard_min_confidence_threshold_for_calling" value="0" /> + <param name="standard_min_confidence_threshold_for_emitting" value="4" /> + <param name="gatk_param_type_selector" value="basic" /> + <param name="analysis_param_type_selector" value="advanced" /> + <param name="genotype_likelihoods_model" value="BOTH" /> + <param name="p_nonref_model" value="EXACT" /> + <param name="heterozygosity" value="0.001" /> + <param name="pcr_error_rate" value="0.0001" /> + <param name="genotyping_mode" value="DISCOVERY" /> + <param name="output_mode" value="EMIT_ALL_CONFIDENT_SITES" /> + <param name="compute_SLOD" /> + <param name="min_base_quality_score" value="17" /> + <param name="max_deletion_fraction" value="-1" /> + <param name="min_indel_count_for_genotyping" value="2" /> + <param name="indel_heterozygosity" value="0.000125" /> + <param name="indelGapContinuationPenalty" value="10" /> + <param name="indelGapOpenPenalty" value="3" /> + <param name="indelHaplotypeSize" value="80" /> + <param name="doContextDependentGapPenalties" /> + <!-- <param name="annotation" value="" /> + <param name="group" value="" /> --> + <output name="output_vcf" file="gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.vcf" lines_diff="4" /> + <output name="output_metrics" file="gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.metrics" /> + <output name="output_log" file="gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains" compare="contains" /> + </test> + </tests> + <help> +**What it does** + +A variant caller which unifies the approaches of several disparate callers. Works for single-sample and multi-sample data. The user can choose from several different incorporated calculation models. + +For more information on the GATK Unified Genotyper, see this `tool specific page <http://www.broadinstitute.org/gsa/wiki/index.php/Unified_genotyper>`_. + +To learn about best practices for variant detection using GATK, see this `overview <http://www.broadinstitute.org/gsa/wiki/index.php/Best_Practice_Variant_Detection_with_the_GATK_v3>`_. + +If you encounter errors, please view the `GATK FAQ <http://www.broadinstitute.org/gsa/wiki/index.php/Frequently_Asked_Questions>`_. + +------ + +**Inputs** + +GenomeAnalysisTK: UnifiedGenotyper accepts an aligned BAM input file. + + +**Outputs** + +The output is in VCF format. + + +Go `here <http://www.broadinstitute.org/gsa/wiki/index.php/Input_files_for_the_GATK>`_ for details on GATK file formats. + +------- + +**Settings**:: + + genotype_likelihoods_model Genotype likelihoods calculation model to employ -- BOTH is the default option, while INDEL is also available for calling indels and SNP is available for calling SNPs only (SNP|INDEL|BOTH) + p_nonref_model Non-reference probability calculation model to employ -- EXACT is the default option, while GRID_SEARCH is also available. (EXACT|GRID_SEARCH) + heterozygosity Heterozygosity value used to compute prior likelihoods for any locus + pcr_error_rate The PCR error rate to be used for computing fragment-based likelihoods + genotyping_mode Should we output confident genotypes (i.e. including ref calls) or just the variants? (DISCOVERY|GENOTYPE_GIVEN_ALLELES) + output_mode Should we output confident genotypes (i.e. including ref calls) or just the variants? (EMIT_VARIANTS_ONLY|EMIT_ALL_CONFIDENT_SITES|EMIT_ALL_SITES) + standard_min_confidence_threshold_for_calling The minimum phred-scaled confidence threshold at which variants not at 'trigger' track sites should be called + standard_min_confidence_threshold_for_emitting The minimum phred-scaled confidence threshold at which variants not at 'trigger' track sites should be emitted (and filtered if less than the calling threshold) + noSLOD If provided, we will not calculate the SLOD + min_base_quality_score Minimum base quality required to consider a base for calling + max_deletion_fraction Maximum fraction of reads with deletions spanning this locus for it to be callable [to disable, set to < 0 or > 1; default:0.05] + min_indel_count_for_genotyping Minimum number of consensus indels required to trigger genotyping run + indel_heterozygosity Heterozygosity for indel calling + indelGapContinuationPenalty Indel gap continuation penalty + indelGapOpenPenalty Indel gap open penalty + indelHaplotypeSize Indel haplotype size + doContextDependentGapPenalties Vary gap penalties by context + indel_recal_file Filename for the input covariates table recalibration .csv file - EXPERIMENTAL, DO NO USE + indelDebug Output indel debug info + out File to which variants should be written + annotation One or more specific annotations to apply to variant calls + group One or more classes/groups of annotations to apply to variant calls + +@CITATION_SECTION@ + </help> +</tool>