Mercurial > repos > devteam > unified_genotyper
diff test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains @ 0:9c827306417a draft default tip
Imported from capsule None
author | devteam |
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date | Tue, 01 Apr 2014 09:12:01 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains Tue Apr 01 09:12:01 2014 -0400 @@ -0,0 +1,12 @@ +Program Args: -T UnifiedGenotyper +GenomeAnalysisEngine - Strictness is SILENT +TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] +TraversalEngine - Location processed.sites runtime per.1M.sites completed total.runtime remaining +UnifiedGenotyper - Visited bases 5387 +UnifiedGenotyper - Callable bases 5344 +UnifiedGenotyper - Confidently called bases 5344 +UnifiedGenotyper - % callable bases of all loci 99.202 +UnifiedGenotyper - % confidently called bases of all loci 99.202 +UnifiedGenotyper - % confidently called bases of callable loci 100.000 +UnifiedGenotyper - Actual calls made 1 +TraversalEngine - Total runtime