Mercurial > repos > devteam > testing_from_bjorn

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Galaxy deeptools wrapper
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deepTools are user-friendly tools for the normalization and visualization of
deep-sequencing data.
They address the challenge of visualizing the large amounts of data that are now
routinely generated from sequencing centers in a meaningful way.
To do so, deepTools contain useful routines to process the mapped reads data
through removal of duplicates and different filtering options to create coverage
files in standard bedGraph and bigWig file formats. deepTools allow the creation
of normalized coverage files or the comparison between two files
(for example, treatment and control). Finally, using such normalized and
standardized files, multiple visualizations can be created to identify
enrichments with functional annotations of the genome.
For a gallery of images that can be produced and a description
of the tools see our poster_.

.. _poster: http://f1000.com/posters/browse/summary/1094053

deeptools is developed under here:

    https://github.com/fidelram/deepTools

For support, questions, or feature requests contact: deeptools@googlegroups.com


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Citation
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deeptools are currently under review. In the meantime please refere to


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History
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- v1.0: Initial public release


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Wrapper Licence (MIT/BSD style)
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Permission to use, copy, modify, and distribute this software and its
documentation with or without modifications and for any purpose and
without fee is hereby granted, provided that any copyright notices
appear in all copies and that both those copyright notices and this
permission notice appear in supporting documentation, and that the
names of the contributors or copyright holders not be used in
advertising or publicity pertaining to distribution of the software
without specific prior permission.

THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
OR PERFORMANCE OF THIS SOFTWARE.
author	devteam
date	Thu, 14 Nov 2013 15:58:04 -0500
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