Mercurial > repos > devteam > subtract
changeset 0:63926e5abb30
Imported from capsule None
| author | devteam |
|---|---|
| date | Tue, 01 Apr 2014 09:13:11 -0400 |
| parents | |
| children | 2eb1c35828b4 |
| files | gops_subtract.py operation_filter.py subtract.xml test-data/1.bed test-data/2.bed test-data/2_mod.bed test-data/gops-subtract-p.dat test-data/gops-subtract.dat test-data/gops_subtract_bigint.bed test-data/gops_subtract_diffCols.dat test-data/gops_subtract_in1.gff test-data/gops_subtract_in2.bed test-data/gops_subtract_in2.gff test-data/gops_subtract_out1.gff tool_dependencies.xml utils/__init__.py utils/gff_util.py utils/odict.py |
| diffstat | 17 files changed, 2727 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gops_subtract.py Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,96 @@ +#!/usr/bin/env python +""" +Find regions of first interval file that do not overlap regions in a second +interval file. Interval files can either be BED or GFF format. + +usage: %prog interval_file_1 interval_file_2 out_file + -1, --cols1=N,N,N,N: Columns for start, end, strand in first file + -2, --cols2=N,N,N,N: Columns for start, end, strand in second file + -m, --mincols=N: Require this much overlap (default 1bp) + -p, --pieces: just print pieces of second set (after padding) + -G, --gff1: input 1 is GFF format, meaning start and end coordinates are 1-based, closed interval + -H, --gff2: input 2 is GFF format, meaning start and end coordinates are 1-based, closed interval +""" +import sys, traceback, fileinput +from warnings import warn +from bx.intervals import * +from bx.intervals.io import * +from bx.intervals.operations.subtract import * +from bx.cookbook import doc_optparse +from galaxy.tools.util.galaxyops import * +from utils.gff_util import GFFFeature, GFFReaderWrapper, convert_bed_coords_to_gff + +assert sys.version_info[:2] >= ( 2, 4 ) + +def main(): + mincols = 1 + upstream_pad = 0 + downstream_pad = 0 + + options, args = doc_optparse.parse( __doc__ ) + try: + chr_col_1, start_col_1, end_col_1, strand_col_1 = parse_cols_arg( options.cols1 ) + chr_col_2, start_col_2, end_col_2, strand_col_2 = parse_cols_arg( options.cols2 ) + if options.mincols: mincols = int( options.mincols ) + pieces = bool( options.pieces ) + in1_gff_format = bool( options.gff1 ) + in2_gff_format = bool( options.gff2 ) + in_fname, in2_fname, out_fname = args + except: + doc_optparse.exception() + + # Set readers to handle either GFF or default format. + if in1_gff_format: + in1_reader_wrapper = GFFReaderWrapper + else: + in1_reader_wrapper = NiceReaderWrapper + if in2_gff_format: + in2_reader_wrapper = GFFReaderWrapper + else: + in2_reader_wrapper = NiceReaderWrapper + + g1 = in1_reader_wrapper( fileinput.FileInput( in_fname ), + chrom_col=chr_col_1, + start_col=start_col_1, + end_col=end_col_1, + strand_col=strand_col_1, + fix_strand=True ) + if in1_gff_format: + # Subtract requires coordinates in BED format. + g1.convert_to_bed_coord=True + + g2 = in2_reader_wrapper( fileinput.FileInput( in2_fname ), + chrom_col=chr_col_2, + start_col=start_col_2, + end_col=end_col_2, + strand_col=strand_col_2, + fix_strand=True ) + if in2_gff_format: + # Subtract requires coordinates in BED format. + g2.convert_to_bed_coord=True + + out_file = open( out_fname, "w" ) + try: + for feature in subtract( [g1,g2], pieces=pieces, mincols=mincols ): + if isinstance( feature, GFFFeature ): + # Convert back to GFF coordinates since reader converted automatically. + convert_bed_coords_to_gff( feature ) + for interval in feature.intervals: + out_file.write( "%s\n" % "\t".join( interval.fields ) ) + elif isinstance( feature, GenomicInterval ): + out_file.write( "%s\n" % "\t".join( feature.fields ) ) + else: + out_file.write( "%s\n" % feature ) + except ParseError, exc: + out_file.close() + fail( "Invalid file format: %s" % str( exc ) ) + + out_file.close() + + if g1.skipped > 0: + print skipped( g1, filedesc=" of 2nd dataset" ) + if g2.skipped > 0: + print skipped( g2, filedesc=" of 1st dataset" ) + +if __name__ == "__main__": + main()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/operation_filter.py Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,99 @@ +# runs after the job (and after the default post-filter) +import os +from galaxy import eggs +from galaxy import jobs +from galaxy.tools.parameters import DataToolParameter + +from galaxy.jobs.handler import JOB_ERROR + +# Older py compatibility +try: + set() +except: + from sets import Set as set + +#def exec_before_process(app, inp_data, out_data, param_dict, tool=None): +# """Sets the name of the data""" +# dbkeys = sets.Set( [data.dbkey for data in inp_data.values() ] ) +# if len(dbkeys) != 1: +# raise Exception, '<p><font color="yellow">Both Queries must be from the same genome build</font></p>' + +def validate_input( trans, error_map, param_values, page_param_map ): + dbkeys = set() + data_param_names = set() + data_params = 0 + for name, param in page_param_map.iteritems(): + if isinstance( param, DataToolParameter ): + # for each dataset parameter + if param_values.get(name, None) != None: + dbkeys.add( param_values[name].dbkey ) + data_params += 1 + # check meta data + try: + param = param_values[name] + if isinstance( param.datatype, trans.app.datatypes_registry.get_datatype_by_extension( 'gff' ).__class__ ): + # TODO: currently cannot validate GFF inputs b/c they are not derived from interval. + pass + else: # Validate interval datatype. + startCol = int( param.metadata.startCol ) + endCol = int( param.metadata.endCol ) + chromCol = int( param.metadata.chromCol ) + if param.metadata.strandCol is not None: + strandCol = int ( param.metadata.strandCol ) + else: + strandCol = 0 + except: + error_msg = "The attributes of this dataset are not properly set. " + \ + "Click the pencil icon in the history item to set the chrom, start, end and strand columns." + error_map[name] = error_msg + data_param_names.add( name ) + if len( dbkeys ) > 1: + for name in data_param_names: + error_map[name] = "All datasets must belong to same genomic build, " \ + "this dataset is linked to build '%s'" % param_values[name].dbkey + if data_params != len(data_param_names): + for name in data_param_names: + error_map[name] = "A dataset of the appropriate type is required" + +# Commented out by INS, 5/30/2007. What is the PURPOSE of this? +def exec_after_process(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None): + """Verify the output data after each run""" + items = out_data.items() + + for name, data in items: + try: + if stderr and len( stderr ) > 0: + raise Exception( stderr ) + + except Exception, exc: + data.blurb = JOB_ERROR + data.state = JOB_ERROR + +## def exec_after_process(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None): +## pass + + +def exec_after_merge(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None): + exec_after_process( + app, inp_data, out_data, param_dict, tool=tool, stdout=stdout, stderr=stderr) + + # strip strand column if clusters were merged + items = out_data.items() + for name, data in items: + if param_dict['returntype'] == True: + data.metadata.chromCol = 1 + data.metadata.startCol = 2 + data.metadata.endCol = 3 + # merge always clobbers strand + data.metadata.strandCol = None + + +def exec_after_cluster(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None): + exec_after_process( + app, inp_data, out_data, param_dict, tool=tool, stdout=stdout, stderr=stderr) + + # strip strand column if clusters were merged + if param_dict["returntype"] == '1': + items = out_data.items() + for name, data in items: + data.metadata.strandCol = None
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/subtract.xml Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,128 @@ +<tool id="gops_subtract_1" name="Subtract" version="0.0.1"> + <description>the intervals of two datasets</description> + <requirements> + <requirement type="package" version="0.7.1">bx-python</requirement> + <requirement type="package" version="1.0.0">galaxy-ops</requirement> + </requirements> + <command interpreter="python">gops_subtract.py + $input1 $input2 $output + + #if isinstance( $input1.datatype, $__app__.datatypes_registry.get_datatype_by_extension('gff').__class__): + -1 1,4,5,7 --gff1 + #else: + -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol} + #end if + + #if isinstance( $input2.datatype, $__app__.datatypes_registry.get_datatype_by_extension('gff').__class__): + -2 1,4,5,7 --gff2 + #else: + -2 ${input2.metadata.chromCol},${input2.metadata.startCol},${input2.metadata.endCol},${input2.metadata.strandCol} + #end if + + -m $min $returntype + </command> + <inputs> + <param format="interval,gff" name="input2" type="data" help="Second dataset"> + <label>Subtract</label> + </param> + + <param format="interval,gff" name="input1" type="data" help="First dataset"> + <label>from</label> + </param> + + <param name="returntype" type="select" label="Return" help="of the first dataset (see figure below)"> + <option value="">Intervals with no overlap</option> + <option value="-p">Non-overlapping pieces of intervals</option> + </param> + + <param name="min" size="4" type="integer" value="1" min="1" help="(bp)"> + <label>where minimal overlap is</label> + </param> + </inputs> + <outputs> + <data format="input" name="output" metadata_source="input1"/> + </outputs> + <code file="operation_filter.py"/> + <trackster_conf/> + <tests> + <test> + <param name="input1" value="1.bed" /> + <param name="input2" value="2.bed" /> + <param name="min" value="1" /> + <param name="returntype" value="" /> + <output name="output" file="gops-subtract.dat" /> + </test> + <test> + <param name="input1" value="1.bed" /> + <param name="input2" value="2_mod.bed" ftype="interval"/> + <param name="min" value="1" /> + <param name="returntype" value="" /> + <output name="output" file="gops_subtract_diffCols.dat" /> + </test> + <test> + <param name="input1" value="gops_subtract_bigint.bed" /> + <param name="input2" value="2.bed" /> + <param name="min" value="1" /> + <param name="returntype" value="" /> + <output name="output" file="gops-subtract.dat" /> + </test> + <test> + <param name="input1" value="1.bed" /> + <param name="input2" value="2.bed" /> + <param name="min" value="10" /> + <param name="returntype" value="Non-overlapping pieces of intervals" /> + <output name="output" file="gops-subtract-p.dat" /> + </test> + <!-- Subtract two GFF files. --> + <test> + <param name="input1" value="gops_subtract_in1.gff" /> + <param name="input2" value="gops_subtract_in2.gff" /> + <param name="min" value="1" /> + <param name="returntype" value="" /> + <output name="output" file="gops_subtract_out1.gff" /> + </test> + <!-- Subtract BED file from GFF file. --> + <test> + <param name="input1" value="gops_subtract_in1.gff" /> + <param name="input2" value="gops_subtract_in2.bed" /> + <param name="min" value="1" /> + <param name="returntype" value="" /> + <output name="output" file="gops_subtract_out1.gff" /> + </test> + </tests> + <help> + +.. class:: infomark + +**TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in interval format. Use "edit attributes" to set chromosome, start, end, and strand columns. + +----- + +**Screencasts!** + +See Galaxy Interval Operation Screencasts_ (right click to open this link in another window). + +.. _Screencasts: http://wiki.g2.bx.psu.edu/Learn/Interval%20Operations + +----- + +**Syntax** + +- **Where overlap is at least** sets the minimum length (in base pairs) of overlap between elements of the two datasets. +- **Intervals with no overlap** returns entire intervals from the first dataset that do not overlap the second dataset. The returned intervals are completely unchanged, and this option only filters out intervals that overlap with the second dataset. +- **Non-overlapping pieces of intervals** returns intervals from the first dataset that have the intervals from the second dataset removed. Any overlapping base pairs are removed from the range of the interval. All fields besides start and end are guaranteed to remain unchanged. + +----- + +**Example** + +Intervals with no overlap: + +.. image:: ${static_path}/operation_icons/gops_subtractOverlappingIntervals.gif + +Non-overlapping pieces of intervals: + +.. image:: ${static_path}/operation_icons/gops_subtractOverlappingPieces.gif + +</help> +</tool>
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2_mod.bed Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,69 @@ +#chr name score strand start end +chr1 NM_005997_cds_0_0_chr1_147962193_r 0 - 147962192 147962580 +chr1 BC007833_cds_0_0_chr1_147984546_f 0 + 147984545 147984630 +chr1 AJ011123_cds_0_0_chr1_148078401_r 0 - 148078400 148078582 +chr1 NM_002796_cds_0_0_chr1_148185137_f 0 + 148185136 148185276 +chr10 AY029205_cds_0_0_chr10_55251624_r 0 - 55251623 55253124 +chr11 AK057832_cds_0_0_chr11_116124408_r 0 - 116124407 116124501 +chr11 NM_000040_cds_1_0_chr11_116206509_f 0 + 116206508 116206563 +chr11 BC005380_cds_0_0_chr11_116211734_r 0 - 116211733 116212337 +chr11 AY358331_cds_0_0_chr11_130745912_f 0 + 130745911 130745993 +chr12 NM_052885_cds_0_0_chr12_38440095_r 0 - 38440094 38440321 +chr12 AY792511_cds_0_0_chr12_38905201_f 0 + 38905200 38905351 +chr13 NM_207440_cds_1_0_chr13_112381695_f 0 + 112381694 112381953 +chr13 NM_032116_cds_0_0_chr13_29680677_r 0 - 29680676 29680875 +chr14 U88895_cds_0_0_chr14_98521865_f 0 + 98521864 98521922 +chr14 NM_022898_cds_0_0_chr14_98710241_r 0 - 98710240 98712285 +chr15 BX537418_cds_0_0_chr15_41486873_r 0 - 41486872 41487060 +chr15 AK223365_cds_0_0_chr15_41673709_f 0 + 41673708 41673857 +chr15 NM_153700_cds_0_0_chr15_41679162_r 0 - 41679161 41679250 +chr15 AK223365_cds_0_0_chr15_41773541_f 0 + 41773540 41773689 +chr16 NM_005332_cds_0_0_chr16_142909_f 0 + 142908 143003 +chr16 BC065198_cds_0_0_chr16_179198_r 0 - 179197 179339 +chr16 AK057165_cds_2_0_chr16_244414_f 0 + 244413 244681 +chr16 AB016929_cds_0_0_chr16_259269_r 0 - 259268 259383 +chr18 NM_001792_cds_0_0_chr18_23786115_r 0 - 23786114 23786321 +chr18 NM_012397_cds_1_0_chr18_59406882_f 0 + 59406881 59407046 +chr18 AB046400_cds_0_0_chr18_59455933_r 0 - 59455932 59456337 +chr18 AY792326_cds_0_0_chr18_59528408_f 0 + 59528407 59528575 +chr19 BC013995_cds_1_0_chr19_59068596_f 0 + 59068595 59069564 +chr19 NM_198481_cds_0_0_chr19_59236027_r 0 - 59236026 59236146 +chr19 NM_004542_cds_0_0_chr19_59297999_f 0 + 59297998 59298008 +chr19 AK128544_cds_3_0_chr19_59318206_r 0 - 59318205 59318718 +chr2 NM_006773_cds_0_0_chr2_118288584_f 0 + 118288583 118288668 +chr2 BC005078_cds_0_0_chr2_118390396_r 0 - 118390395 118390500 +chr2 AY125465_cds_0_0_chr2_220108690_f 0 + 220108689 220109267 +chr2 NM_024536_cds_0_0_chr2_220229610_r 0 - 220229609 220230869 +chr20 NM_181466_cds_0_0_chr20_33330414_r 0 - 33330413 33330423 +chr20 BC085019_cds_1_0_chr20_33485371_f 0 + 33485370 33486123 +chr20 NM_000557_cds_1_0_chr20_33488492_r 0 - 33488491 33489122 +chr20 AF022655_cds_1_0_chr20_33513607_f 0 + 33513606 33513792 +chr21 NM_032910_cds_0_0_chr21_32687403_f 0 + 32687402 32687588 +chr21 NM_018277_cds_3_0_chr21_32869642_r 0 - 32869641 32870022 +chr21 NM_005806_cds_1_0_chr21_33321041_f 0 + 33321040 33322012 +chr21 AK129657_cds_0_0_chr21_33728359_r 0 - 33728358 33728724 +chr22 NM_004147_cds_0_0_chr22_30120224_f 0 + 30120223 30120265 +chr22 BC032941_cds_0_0_chr22_30160420_r 0 - 30160419 30160661 +chr22 NM_001007467_cds_1_0_chr22_30228825_f 0 + 30228824 30228916 +chr22 CR456540_cds_0_0_chr22_30340152_r 0 - 30340151 30340376 +chr5 AF099740_cds_11_0_chr5_131311207_r 0 - 131311206 131311254 +chr5 NM_000588_cds_0_0_chr5_131424299_f 0 + 131424298 131424460 +chr5 BC035813_cds_0_0_chr5_131556602_r 0 - 131556601 131556672 +chr5 BC003096_cds_0_0_chr5_131621327_f 0 + 131621326 131621419 +chr6 NM_007214_cds_0_0_chr6_108299601_r 0 - 108299600 108299744 +chr6 NM_003269_cds_0_0_chr6_108594663_f 0 + 108594662 108594687 +chr6 NM_003795_cds_0_0_chr6_108640046_r 0 - 108640045 108640151 +chr6 NM_145315_cds_0_0_chr6_108722977_f 0 + 108722976 108723115 +chr7 AF467257_cds_1_0_chr7_113660518_f 0 + 113660517 113660685 +chr7 NM_003391_cds_0_0_chr7_116512160_r 0 - 116512159 116512389 +chr7 NM_000492_cds_0_0_chr7_116714100_f 0 + 116714099 116714152 +chr7 AF377960_cds_0_0_chr7_116945542_r 0 - 116945541 116945787 +chr8 NM_000127_cds_0_0_chr8_118881132_r 0 - 118881131 118881317 +chr9 BC051300_cds_0_0_chr9_128764157_f 0 + 128764156 128764189 +chr9 NM_014908_cds_0_0_chr9_128787520_r 0 - 128787519 128789136 +chr9 NM_015354_cds_0_0_chr9_128789553_f 0 + 128789552 128789584 +chr9 AB058751_cds_0_0_chr9_128850517_r 0 - 128850516 128850624 +chrX NM_001167_cds_1_0_chrX_122745048_f 0 + 122745047 122745924 +chrX NM_000425_cds_0_0_chrX_152648965_r 0 - 152648964 152649196 +chrX AF101728_cds_0_0_chrX_152691447_f 0 + 152691446 152691471 +chrX BC052303_cds_0_0_chrX_152694030_r 0 - 152694029 152694263
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gops-subtract-p.dat Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,16 @@ +chr11 1812377 1812407 CCDS7726.1_cds_0_0_chr11_1812378_f 0 + +chr15 41826029 41826196 CCDS10101.1_cds_0_0_chr15_41826030_f 0 + +chr16 179963 180135 CCDS10401.1_cds_0_0_chr16_179964_r 0 - +chr18 59600586 59600754 CCDS11988.1_cds_0_0_chr18_59600587_f 0 + +chr19 59302168 59302288 CCDS12878.1_cds_0_0_chr19_59302169_r 0 - +chr2 118394148 118394202 CCDS2121.1_cds_0_0_chr2_118394149_r 0 - +chr2 220190202 220190242 CCDS2441.1_cds_0_0_chr2_220190203_f 0 + +chr20 33579500 33579527 CCDS13256.1_cds_0_0_chr20_33579501_r 0 - +chr20 33593260 33593348 CCDS13257.1_cds_0_0_chr20_33593261_f 0 + +chr21 32707032 32707192 CCDS13614.1_cds_0_0_chr21_32707033_f 0 + +chr21 33744994 33745040 CCDS13625.1_cds_0_0_chr21_33744995_r 0 - +chr22 30665273 30665360 CCDS13901.1_cds_0_0_chr22_30665274_f 0 + +chr22 30939054 30939266 CCDS13903.1_cds_0_0_chr22_30939055_r 0 - +chr5 131847541 131847666 CCDS4155.1_cds_0_0_chr5_131847542_r 0 - +chr9 128882427 128882523 CCDS6917.1_cds_0_0_chr9_128882428_f 0 + +chr9 128937229 128937445 CCDS6919.1_cds_0_0_chr9_128937230_r 0 -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gops-subtract.dat Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,16 @@ +chr11 1812377 1812407 CCDS7726.1_cds_0_0_chr11_1812378_f 0 + +chr15 41826029 41826196 CCDS10101.1_cds_0_0_chr15_41826030_f 0 + +chr16 179963 180135 CCDS10401.1_cds_0_0_chr16_179964_r 0 - +chr18 59600586 59600754 CCDS11988.1_cds_0_0_chr18_59600587_f 0 + +chr19 59302168 59302288 CCDS12878.1_cds_0_0_chr19_59302169_r 0 - +chr2 118394148 118394202 CCDS2121.1_cds_0_0_chr2_118394149_r 0 - +chr2 220190202 220190242 CCDS2441.1_cds_0_0_chr2_220190203_f 0 + +chr20 33579500 33579527 CCDS13256.1_cds_0_0_chr20_33579501_r 0 - +chr20 33593260 33593348 CCDS13257.1_cds_0_0_chr20_33593261_f 0 + +chr21 32707032 32707192 CCDS13614.1_cds_0_0_chr21_32707033_f 0 + +chr21 33744994 33745040 CCDS13625.1_cds_0_0_chr21_33744995_r 0 - +chr22 30665273 30665360 CCDS13901.1_cds_0_0_chr22_30665274_f 0 + +chr22 30939054 30939266 CCDS13903.1_cds_0_0_chr22_30939055_r 0 - +chr5 131847541 131847666 CCDS4155.1_cds_0_0_chr5_131847542_r 0 - +chr9 128882427 128882523 CCDS6917.1_cds_0_0_chr9_128882428_f 0 + +chr9 128937229 128937445 CCDS6919.1_cds_0_0_chr9_128937230_r 0 -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gops_subtract_bigint.bed Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,66 @@ +chr1 147962192 147962580 CCDS989.1_cds_0_0_chr1_147962193_r 0 - +chr1 147984545 147984630 CCDS990.1_cds_0_0_chr1_147984546_f 0 + +chr1 148078400 148078582 CCDS993.1_cds_0_0_chr1_148078401_r 0 - +chr1 148185136 148185276 CCDS996.1_cds_0_0_chr1_148185137_f 0 + +chr10 55251623 55253124 CCDS7248.1_cds_0_0_chr10_55251624_r 0 - +chr11 116124407 116124501 CCDS8374.1_cds_0_0_chr11_116124408_r 0 - +chr11 116206508 116206563 CCDS8377.1_cds_0_0_chr11_116206509_f 0 + +chr11 116211733 116212337 CCDS8378.1_cds_0_0_chr11_116211734_r 0 - +chr11 1812377 1812407 CCDS7726.1_cds_0_0_chr11_1812378_f 0 + +chr12 38440094 38440321 CCDS8736.1_cds_0_0_chr12_38440095_r 0 - +chr13 112381694 112381953 CCDS9526.1_cds_0_0_chr13_112381695_f 0 + +chr14 98710240 98712285 CCDS9949.1_cds_0_0_chr14_98710241_r 0 - +chr15 41486872 41487060 CCDS10096.1_cds_0_0_chr15_41486873_r 0 - +chr15 41673708 41673857 CCDS10097.1_cds_0_0_chr15_41673709_f 0 + +chr15 41679161 41679250 CCDS10098.1_cds_0_0_chr15_41679162_r 0 - +chr15 41826029 41826196 CCDS10101.1_cds_0_0_chr15_41826030_f 0 + +chr16 142908 143003 CCDS10397.1_cds_0_0_chr16_142909_f 0 + +chr16 179963 180135 CCDS10401.1_cds_0_0_chr16_179964_r 0 - +chr16 244413 244681 CCDS10402.1_cds_0_0_chr16_244414_f 0 + +chr16 259268 259383 CCDS10403.1_cds_0_0_chr16_259269_r 0 - +chr18 23786114 23786321 CCDS11891.1_cds_0_0_chr18_23786115_r 0 - +chr18 59406881 59407046 CCDS11985.1_cds_0_0_chr18_59406882_f 0 + +chr18 59455932 59456337 CCDS11986.1_cds_0_0_chr18_59455933_r 0 - +chr18 59600586 59600754 CCDS11988.1_cds_0_0_chr18_59600587_f 0 + +chr19 59068595 59069564 CCDS12866.1_cds_0_0_chr19_59068596_f 0 + +chr19 59236026 59236146 CCDS12872.1_cds_0_0_chr19_59236027_r 0 - +chr19 59297998 59298008 CCDS12877.1_cds_0_0_chr19_59297999_f 0 + +chr19 59302168 59302288 CCDS12878.1_cds_0_0_chr19_59302169_r 0 - +chr2 118288583 118288668 CCDS2120.1_cds_0_0_chr2_118288584_f 0 + +chr2 118394148 118394202 CCDS2121.1_cds_0_0_chr2_118394149_r 0 - +chr2 220190202 220190242 CCDS2441.1_cds_0_0_chr2_220190203_f 0 + +chr2 220229609 220230869 CCDS2443.1_cds_0_0_chr2_220229610_r 0 - +chr20 33330413 33330423 CCDS13249.1_cds_0_0_chr20_33330414_r 0 - +chr20 33513606 33513792 CCDS13255.1_cds_0_0_chr20_33513607_f 0 + +chr20 33579500 33579527 CCDS13256.1_cds_0_0_chr20_33579501_r 0 - +chr20 33593260 33593348 CCDS13257.1_cds_0_0_chr20_33593261_f 0 + +chr21 32707032 32707192 CCDS13614.1_cds_0_0_chr21_32707033_f 0 + +chr21 32869641 32870022 CCDS13615.1_cds_0_0_chr21_32869642_r 0 - +chr21 33321040 33322012 CCDS13620.1_cds_0_0_chr21_33321041_f 0 + +chr21 33744994 33745040 CCDS13625.1_cds_0_0_chr21_33744995_r 0 - +chr22 30120223 30120265 CCDS13897.1_cds_0_0_chr22_30120224_f 0 + +chr22 30160419 30160661 CCDS13898.1_cds_0_0_chr22_30160420_r 0 - +chr22 30665273 30665360 CCDS13901.1_cds_0_0_chr22_30665274_f 0 + +chr22 30939054 30939266 CCDS13903.1_cds_0_0_chr22_30939055_r 0 - +chr5 131424298 131424460 CCDS4149.1_cds_0_0_chr5_131424299_f 0 + +chr5 131556601 131556672 CCDS4151.1_cds_0_0_chr5_131556602_r 0 - +chr5 131621326 131621419 CCDS4152.1_cds_0_0_chr5_131621327_f 0 + +chr5 131847541 131847666 CCDS4155.1_cds_0_0_chr5_131847542_r 0 - +chr6 108299600 108299744 CCDS5061.1_cds_0_0_chr6_108299601_r 0 - +chr6 108594662 108594687 CCDS5063.1_cds_0_0_chr6_108594663_f 0 + +chr6 108640045 108640151 CCDS5064.1_cds_0_0_chr6_108640046_r 0 - +chr6 108722976 108723115 CCDS5067.1_cds_0_0_chr6_108722977_f 0 + +chr7 113660517 113660685 CCDS5760.1_cds_0_0_chr7_113660518_f 0 + +chr7 116512159 116512389 CCDS5771.1_cds_0_0_chr7_116512160_r 0 - +chr7 116714099 116714152 CCDS5773.1_cds_0_0_chr7_116714100_f 0 + +chr7 116945541 116945787 CCDS5774.1_cds_0_0_chr7_116945542_r 0 - +chr8 118881131 118881317 CCDS6324.1_cds_0_0_chr8_118881132_r 0 - +chr9 128764156 128764189 CCDS6914.1_cds_0_0_chr9_128764157_f 0 + +chr9 128787519 128789136 CCDS6915.1_cds_0_0_chr9_128787520_r 0 - +chr9 128882427 128882523 CCDS6917.1_cds_0_0_chr9_128882428_f 0 + +chr9 128937229 128937445 CCDS6919.1_cds_0_0_chr9_128937230_r 0 - +chrX 122745047 122745924 CCDS14606.1_cds_0_0_chrX_122745048_f 0 + +chrX 152648964 152649196 CCDS14733.1_cds_0_0_chrX_152648965_r 0 - +chrX 152691446 152691471 CCDS14735.1_cds_0_0_chrX_152691447_f 0 + +chrX 152694029 152694263 CCDS14736.1_cds_0_0_chrX_152694030_r 0 - +chrX 4294967295 4294967322 CCDS14736.1_cds_0_0_chrX_4294967296_r 0 -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gops_subtract_diffCols.dat Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,16 @@ +chr11 1812377 1812407 CCDS7726.1_cds_0_0_chr11_1812378_f 0 + +chr15 41826029 41826196 CCDS10101.1_cds_0_0_chr15_41826030_f 0 + +chr16 179963 180135 CCDS10401.1_cds_0_0_chr16_179964_r 0 - +chr18 59600586 59600754 CCDS11988.1_cds_0_0_chr18_59600587_f 0 + +chr19 59302168 59302288 CCDS12878.1_cds_0_0_chr19_59302169_r 0 - +chr2 118394148 118394202 CCDS2121.1_cds_0_0_chr2_118394149_r 0 - +chr2 220190202 220190242 CCDS2441.1_cds_0_0_chr2_220190203_f 0 + +chr20 33579500 33579527 CCDS13256.1_cds_0_0_chr20_33579501_r 0 - +chr20 33593260 33593348 CCDS13257.1_cds_0_0_chr20_33593261_f 0 + +chr21 32707032 32707192 CCDS13614.1_cds_0_0_chr21_32707033_f 0 + +chr21 33744994 33745040 CCDS13625.1_cds_0_0_chr21_33744995_r 0 - +chr22 30665273 30665360 CCDS13901.1_cds_0_0_chr22_30665274_f 0 + +chr22 30939054 30939266 CCDS13903.1_cds_0_0_chr22_30939055_r 0 - +chr5 131847541 131847666 CCDS4155.1_cds_0_0_chr5_131847542_r 0 - +chr9 128882427 128882523 CCDS6917.1_cds_0_0_chr9_128882428_f 0 + +chr9 128937229 128937445 CCDS6919.1_cds_0_0_chr9_128937230_r 0 -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gops_subtract_in1.gff Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,500 @@ +chr13 Cufflinks transcript 3405463 3405542 1000 . . gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914"; +chr13 Cufflinks exon 3405463 3405542 1000 . . gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; exon_number "1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914"; +chr13 Cufflinks transcript 3473337 3473372 1000 . . gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000"; +chr13 Cufflinks exon 3473337 3473372 1000 . . gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; exon_number "1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000"; +chr13 Cufflinks transcript 3490319 3490350 1000 . . gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250"; +chr13 Cufflinks exon 3490319 3490350 1000 . . gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; exon_number "1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250"; +chr13 Cufflinks transcript 3565855 3566203 1000 - . gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091"; +chr13 Cufflinks exon 3565855 3565913 1000 - . gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; exon_number "1"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091"; +chr13 Cufflinks exon 3566164 3566203 1000 - . gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; exon_number "2"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091"; +chr13 Cufflinks transcript 3566475 3566560 1000 . . gene_id "CUFF.50197"; transcript_id "CUFF.50197.1"; FPKM "14.7370708604"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.753975"; cov "0.941860"; +chr13 Cufflinks exon 3566475 3566560 1000 . . gene_id "CUFF.50197"; transcript_id "CUFF.50197.1"; exon_number "1"; FPKM "14.7370708604"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.753975"; cov "0.941860"; +chr13 Cufflinks transcript 3566664 3566942 1000 . . gene_id "CUFF.50199"; transcript_id "CUFF.50199.1"; FPKM "31.7874813134"; frac "1.000000"; conf_lo "17.911934"; conf_hi "45.663029"; cov "2.031569"; +chr13 Cufflinks exon 3566664 3566942 1000 . . gene_id "CUFF.50199"; transcript_id "CUFF.50199.1"; exon_number "1"; FPKM "31.7874813134"; frac "1.000000"; conf_lo "17.911934"; conf_hi "45.663029"; cov "2.031569"; +chr13 Cufflinks transcript 3568042 3568068 1000 . . gene_id "CUFF.50201"; transcript_id "CUFF.50201.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3568042 3568068 1000 . . gene_id "CUFF.50201"; transcript_id "CUFF.50201.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3569564 3569626 1000 . . gene_id "CUFF.50203"; transcript_id "CUFF.50203.1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143"; +chr13 Cufflinks exon 3569564 3569626 1000 . . gene_id "CUFF.50203"; transcript_id "CUFF.50203.1"; exon_number "1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143"; +chr13 Cufflinks transcript 3594171 3594199 1000 . . gene_id "CUFF.50205"; transcript_id "CUFF.50205.1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069"; +chr13 Cufflinks exon 3594171 3594199 1000 . . gene_id "CUFF.50205"; transcript_id "CUFF.50205.1"; exon_number "1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069"; +chr13 Cufflinks transcript 3606116 3613028 1000 - . gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750"; +chr13 Cufflinks exon 3606116 3606146 1000 - . gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; exon_number "1"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750"; +chr13 Cufflinks exon 3612965 3613028 1000 - . gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; exon_number "2"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750"; +chr13 Cufflinks transcript 3603507 3603533 1000 . . gene_id "CUFF.50209"; transcript_id "CUFF.50209.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3603507 3603533 1000 . . gene_id "CUFF.50209"; transcript_id "CUFF.50209.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3604709 3604735 1000 . . gene_id "CUFF.50211"; transcript_id "CUFF.50211.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 3604709 3604735 1000 . . gene_id "CUFF.50211"; transcript_id "CUFF.50211.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 3612524 3612550 1000 . . gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813"; +chr13 Cufflinks exon 3612524 3612550 1000 . . gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; exon_number "1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813"; +chr13 Cufflinks transcript 3639250 3639290 1000 . . gene_id "CUFF.50215"; transcript_id "CUFF.50215.1"; FPKM "30.9119047316"; frac "1.000000"; conf_lo "0.000000"; conf_hi "66.605898"; cov "1.975610"; +chr13 Cufflinks exon 3639250 3639290 1000 . . gene_id "CUFF.50215"; transcript_id "CUFF.50215.1"; exon_number "1"; FPKM "30.9119047316"; frac "1.000000"; conf_lo "0.000000"; conf_hi "66.605898"; cov "1.975610"; +chr13 Cufflinks transcript 3649635 3649777 1000 . . gene_id "CUFF.50217"; transcript_id "CUFF.50217.1"; FPKM "14.7714230069"; frac "1.000000"; conf_lo "1.559461"; conf_hi "27.983385"; cov "0.944056"; +chr13 Cufflinks exon 3649635 3649777 1000 . . gene_id "CUFF.50217"; transcript_id "CUFF.50217.1"; exon_number "1"; FPKM "14.7714230069"; frac "1.000000"; conf_lo "1.559461"; conf_hi "27.983385"; cov "0.944056"; +chr13 Cufflinks transcript 3649976 3650072 1000 . . gene_id "CUFF.50219"; transcript_id "CUFF.50219.1"; FPKM "26.1317132782"; frac "1.000000"; conf_lo "4.795259"; conf_hi "47.468168"; cov "1.670103"; +chr13 Cufflinks exon 3649976 3650072 1000 . . gene_id "CUFF.50219"; transcript_id "CUFF.50219.1"; exon_number "1"; FPKM "26.1317132782"; frac "1.000000"; conf_lo "4.795259"; conf_hi "47.468168"; cov "1.670103"; +chr13 Cufflinks transcript 3650165 3650345 1000 . . gene_id "CUFF.50221"; transcript_id "CUFF.50221.1"; FPKM "16.3383363867"; frac "1.000000"; conf_lo "3.987715"; conf_hi "28.688958"; cov "1.044199"; +chr13 Cufflinks exon 3650165 3650345 1000 . . gene_id "CUFF.50221"; transcript_id "CUFF.50221.1"; exon_number "1"; FPKM "16.3383363867"; frac "1.000000"; conf_lo "3.987715"; conf_hi "28.688958"; cov "1.044199"; +chr13 Cufflinks transcript 3650498 3651017 1000 . . gene_id "CUFF.50223"; transcript_id "CUFF.50223.1"; FPKM "38.9965567383"; frac "1.000000"; conf_lo "27.739220"; conf_hi "50.253893"; cov "2.492308"; +chr13 Cufflinks exon 3650498 3651017 1000 . . gene_id "CUFF.50223"; transcript_id "CUFF.50223.1"; exon_number "1"; FPKM "38.9965567383"; frac "1.000000"; conf_lo "27.739220"; conf_hi "50.253893"; cov "2.492308"; +chr13 Cufflinks transcript 3652248 3652287 1000 . . gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks exon 3652248 3652287 1000 . . gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks transcript 3652708 3652757 1000 . . gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000"; +chr13 Cufflinks exon 3652708 3652757 1000 . . gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000"; +chr13 Cufflinks transcript 3652858 3652892 1000 . . gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857"; +chr13 Cufflinks exon 3652858 3652892 1000 . . gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; exon_number "1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857"; +chr13 Cufflinks transcript 3803155 3803189 1000 . . gene_id "CUFF.50231"; transcript_id "CUFF.50231.1"; FPKM "193.0684834367"; frac "1.000000"; conf_lo "96.519912"; conf_hi "289.617054"; cov "12.339194"; +chr13 Cufflinks exon 3803155 3803189 1000 . . gene_id "CUFF.50231"; transcript_id "CUFF.50231.1"; exon_number "1"; FPKM "193.0684834367"; frac "1.000000"; conf_lo "96.519912"; conf_hi "289.617054"; cov "12.339194"; +chr13 Cufflinks transcript 3881504 3881530 1000 . . gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3881504 3881530 1000 . . gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3881847 3881940 1000 . . gene_id "CUFF.50235"; transcript_id "CUFF.50235.1"; FPKM "11.2303742880"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.439173"; cov "0.717744"; +chr13 Cufflinks exon 3881847 3881940 1000 . . gene_id "CUFF.50235"; transcript_id "CUFF.50235.1"; exon_number "1"; FPKM "11.2303742880"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.439173"; cov "0.717744"; +chr13 Cufflinks transcript 3882719 3882811 1000 . . gene_id "CUFF.50237"; transcript_id "CUFF.50237.1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645"; +chr13 Cufflinks exon 3882719 3882811 1000 . . gene_id "CUFF.50237"; transcript_id "CUFF.50237.1"; exon_number "1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645"; +chr13 Cufflinks transcript 3940646 3940672 1000 . . gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3940646 3940672 1000 . . gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4135893 4135996 1000 . . gene_id "CUFF.50241"; transcript_id "CUFF.50241.1"; FPKM "8.1242826538"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.613753"; cov "0.519231"; +chr13 Cufflinks exon 4135893 4135996 1000 . . gene_id "CUFF.50241"; transcript_id "CUFF.50241.1"; exon_number "1"; FPKM "8.1242826538"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.613753"; cov "0.519231"; +chr13 Cufflinks transcript 4246054 4246080 1000 . . gene_id "CUFF.50243"; transcript_id "CUFF.50243.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 4246054 4246080 1000 . . gene_id "CUFF.50243"; transcript_id "CUFF.50243.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4246081 4246107 1000 . . gene_id "CUFF.50245"; transcript_id "CUFF.50245.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 4246081 4246107 1000 . . gene_id "CUFF.50245"; transcript_id "CUFF.50245.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 4247347 4247373 1000 . . gene_id "CUFF.50247"; transcript_id "CUFF.50247.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 4247347 4247373 1000 . . gene_id "CUFF.50247"; transcript_id "CUFF.50247.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 4247393 4247419 1000 . . gene_id "CUFF.50249"; transcript_id "CUFF.50249.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 4247393 4247419 1000 . . gene_id "CUFF.50249"; transcript_id "CUFF.50249.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 4253585 4253611 1000 . . gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 4253585 4253611 1000 . . gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4356816 4356842 1000 . . gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626"; +chr13 Cufflinks exon 4356816 4356842 1000 . . gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; exon_number "1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626"; +chr13 Cufflinks transcript 4591975 4592074 1000 . . gene_id "CUFF.50255"; transcript_id "CUFF.50255.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.797016"; cov "1.080000"; +chr13 Cufflinks exon 4591975 4592074 1000 . . gene_id "CUFF.50255"; transcript_id "CUFF.50255.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.797016"; cov "1.080000"; +chr13 Cufflinks transcript 4592148 4592531 1000 . . gene_id "CUFF.50257"; transcript_id "CUFF.50257.1"; FPKM "22.0032655207"; frac "1.000000"; conf_lo "12.163106"; conf_hi "31.843425"; cov "1.406250"; +chr13 Cufflinks exon 4592148 4592531 1000 . . gene_id "CUFF.50257"; transcript_id "CUFF.50257.1"; exon_number "1"; FPKM "22.0032655207"; frac "1.000000"; conf_lo "12.163106"; conf_hi "31.843425"; cov "1.406250"; +chr13 Cufflinks transcript 4592862 4592890 1000 . . gene_id "CUFF.50259"; transcript_id "CUFF.50259.1"; FPKM "58.2707169652"; frac "1.000000"; conf_lo "0.000000"; conf_hi "116.541434"; cov "3.724138"; +chr13 Cufflinks exon 4592862 4592890 1000 . . gene_id "CUFF.50259"; transcript_id "CUFF.50259.1"; exon_number "1"; FPKM "58.2707169652"; frac "1.000000"; conf_lo "0.000000"; conf_hi "116.541434"; cov "3.724138"; +chr13 Cufflinks transcript 4594319 4594938 1000 - . gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261"; +chr13 Cufflinks exon 4594319 4594400 1000 - . gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; exon_number "1"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261"; +chr13 Cufflinks exon 4594906 4594938 1000 - . gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; exon_number "2"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261"; +chr13 Cufflinks transcript 4596799 4598059 1000 - . gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks exon 4596799 4596828 1000 - . gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks exon 4598016 4598059 1000 - . gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; exon_number "2"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks transcript 4601790 4601816 1000 . . gene_id "CUFF.50265"; transcript_id "CUFF.50265.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 4601790 4601816 1000 . . gene_id "CUFF.50265"; transcript_id "CUFF.50265.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4601884 4601952 1000 . . gene_id "CUFF.50267"; transcript_id "CUFF.50267.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609"; +chr13 Cufflinks exon 4601884 4601952 1000 . . gene_id "CUFF.50267"; transcript_id "CUFF.50267.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609"; +chr13 Cufflinks transcript 3541632 3541797 1000 . . gene_id "CUFF.50269"; transcript_id "CUFF.50269.1"; FPKM "10.1798240481"; frac "1.000000"; conf_lo "0.000000"; conf_hi "20.359648"; cov "0.650602"; +chr13 Cufflinks exon 3541632 3541797 1000 . . gene_id "CUFF.50269"; transcript_id "CUFF.50269.1"; exon_number "1"; FPKM "10.1798240481"; frac "1.000000"; conf_lo "0.000000"; conf_hi "20.359648"; cov "0.650602"; +chr13 Cufflinks transcript 3541917 3542016 1000 . . gene_id "CUFF.50271"; transcript_id "CUFF.50271.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.308418"; cov "0.810000"; +chr13 Cufflinks exon 3541917 3542016 1000 . . gene_id "CUFF.50271"; transcript_id "CUFF.50271.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.308418"; cov "0.810000"; +chr13 Cufflinks transcript 3542096 3542122 1000 . . gene_id "CUFF.50273"; transcript_id "CUFF.50273.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3542096 3542122 1000 . . gene_id "CUFF.50273"; transcript_id "CUFF.50273.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3548183 3548209 1000 . . gene_id "CUFF.50275"; transcript_id "CUFF.50275.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3548183 3548209 1000 . . gene_id "CUFF.50275"; transcript_id "CUFF.50275.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3559238 3559264 1000 . . gene_id "CUFF.50277"; transcript_id "CUFF.50277.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 3559238 3559264 1000 . . gene_id "CUFF.50277"; transcript_id "CUFF.50277.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 3559265 3559291 1000 . . gene_id "CUFF.50279"; transcript_id "CUFF.50279.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 3559265 3559291 1000 . . gene_id "CUFF.50279"; transcript_id "CUFF.50279.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 3561489 3561515 1000 . . gene_id "CUFF.50281"; transcript_id "CUFF.50281.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 3561489 3561515 1000 . . gene_id "CUFF.50281"; transcript_id "CUFF.50281.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 3561516 3561616 1000 . . gene_id "CUFF.50283"; transcript_id "CUFF.50283.1"; FPKM "12.5483969702"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.038038"; cov "0.801980"; +chr13 Cufflinks exon 3561516 3561616 1000 . . gene_id "CUFF.50283"; transcript_id "CUFF.50283.1"; exon_number "1"; FPKM "12.5483969702"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.038038"; cov "0.801980"; +chr13 Cufflinks transcript 3563788 3563913 1000 . . gene_id "CUFF.50285"; transcript_id "CUFF.50285.1"; FPKM "16.7564314774"; frac "1.000000"; conf_lo "1.765464"; conf_hi "31.747399"; cov "1.070920"; +chr13 Cufflinks exon 3563788 3563913 1000 . . gene_id "CUFF.50285"; transcript_id "CUFF.50285.1"; exon_number "1"; FPKM "16.7564314774"; frac "1.000000"; conf_lo "1.765464"; conf_hi "31.747399"; cov "1.070920"; +chr13 Cufflinks transcript 3564114 3564162 1000 . . gene_id "CUFF.50287"; transcript_id "CUFF.50287.1"; FPKM "68.9735017140"; frac "1.000000"; conf_lo "20.201871"; conf_hi "117.745132"; cov "4.408163"; +chr13 Cufflinks exon 3564114 3564162 1000 . . gene_id "CUFF.50287"; transcript_id "CUFF.50287.1"; exon_number "1"; FPKM "68.9735017140"; frac "1.000000"; conf_lo "20.201871"; conf_hi "117.745132"; cov "4.408163"; +chr13 Cufflinks transcript 5861035 5872268 1000 - . gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143"; +chr13 Cufflinks exon 5861035 5861117 1000 - . gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; exon_number "1"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143"; +chr13 Cufflinks exon 5872240 5872268 1000 - . gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; exon_number "2"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143"; +chr13 Cufflinks transcript 5864061 5864135 1000 . . gene_id "CUFF.50291"; transcript_id "CUFF.50291.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.411224"; cov "1.080000"; +chr13 Cufflinks exon 5864061 5864135 1000 . . gene_id "CUFF.50291"; transcript_id "CUFF.50291.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.411224"; cov "1.080000"; +chr13 Cufflinks transcript 5864192 5864585 1000 . . gene_id "CUFF.50293"; transcript_id "CUFF.50293.1"; FPKM "18.2280859542"; frac "1.000000"; conf_lo "9.386166"; conf_hi "27.070006"; cov "1.164975"; +chr13 Cufflinks exon 5864192 5864585 1000 . . gene_id "CUFF.50293"; transcript_id "CUFF.50293.1"; exon_number "1"; FPKM "18.2280859542"; frac "1.000000"; conf_lo "9.386166"; conf_hi "27.070006"; cov "1.164975"; +chr13 Cufflinks transcript 5865070 5865096 1000 . . gene_id "CUFF.50295"; transcript_id "CUFF.50295.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 5865070 5865096 1000 . . gene_id "CUFF.50295"; transcript_id "CUFF.50295.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 5865442 5866941 1000 + . gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750"; +chr13 Cufflinks exon 5865442 5865510 1000 + . gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750"; +chr13 Cufflinks exon 5866915 5866941 1000 + . gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; exon_number "2"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750"; +chr13 Cufflinks transcript 5866598 5866661 1000 . . gene_id "CUFF.50299"; transcript_id "CUFF.50299.1"; FPKM "92.4137151871"; frac "1.000000"; conf_lo "43.016507"; conf_hi "141.810924"; cov "5.906250"; +chr13 Cufflinks exon 5866598 5866661 1000 . . gene_id "CUFF.50299"; transcript_id "CUFF.50299.1"; exon_number "1"; FPKM "92.4137151871"; frac "1.000000"; conf_lo "43.016507"; conf_hi "141.810924"; cov "5.906250"; +chr13 Cufflinks transcript 5866756 5866871 1000 . . gene_id "CUFF.50301"; transcript_id "CUFF.50301.1"; FPKM "83.7641556375"; frac "1.000000"; conf_lo "48.832088"; conf_hi "118.696223"; cov "5.353448"; +chr13 Cufflinks exon 5866756 5866871 1000 . . gene_id "CUFF.50301"; transcript_id "CUFF.50301.1"; exon_number "1"; FPKM "83.7641556375"; frac "1.000000"; conf_lo "48.832088"; conf_hi "118.696223"; cov "5.353448"; +chr13 Cufflinks transcript 5866964 5867014 1000 . . gene_id "CUFF.50303"; transcript_id "CUFF.50303.1"; FPKM "124.2537347053"; frac "1.000000"; conf_lo "60.089382"; conf_hi "188.418087"; cov "7.941176"; +chr13 Cufflinks exon 5866964 5867014 1000 . . gene_id "CUFF.50303"; transcript_id "CUFF.50303.1"; exon_number "1"; FPKM "124.2537347053"; frac "1.000000"; conf_lo "60.089382"; conf_hi "188.418087"; cov "7.941176"; +chr13 Cufflinks transcript 5867386 5867412 1000 . . gene_id "CUFF.50305"; transcript_id "CUFF.50305.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 5867386 5867412 1000 . . gene_id "CUFF.50305"; transcript_id "CUFF.50305.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 5867480 5867506 1000 . . gene_id "CUFF.50307"; transcript_id "CUFF.50307.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 5867480 5867506 1000 . . gene_id "CUFF.50307"; transcript_id "CUFF.50307.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 5867688 5867737 1000 . . gene_id "CUFF.50309"; transcript_id "CUFF.50309.1"; FPKM "25.3477618799"; frac "1.000000"; conf_lo "0.000000"; conf_hi "54.616836"; cov "1.620000"; +chr13 Cufflinks exon 5867688 5867737 1000 . . gene_id "CUFF.50309"; transcript_id "CUFF.50309.1"; exon_number "1"; FPKM "25.3477618799"; frac "1.000000"; conf_lo "0.000000"; conf_hi "54.616836"; cov "1.620000"; +chr13 Cufflinks transcript 5867820 5868008 1000 . . gene_id "CUFF.50311"; transcript_id "CUFF.50311.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "3.818923"; conf_hi "27.474610"; cov "1.000000"; +chr13 Cufflinks exon 5867820 5868008 1000 . . gene_id "CUFF.50311"; transcript_id "CUFF.50311.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "3.818923"; conf_hi "27.474610"; cov "1.000000"; +chr13 Cufflinks transcript 5868254 5868314 1000 . . gene_id "CUFF.50313"; transcript_id "CUFF.50313.1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246"; +chr13 Cufflinks exon 5868254 5868314 1000 . . gene_id "CUFF.50313"; transcript_id "CUFF.50313.1"; exon_number "1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246"; +chr13 Cufflinks transcript 5869125 5869300 1000 . . gene_id "CUFF.50315"; transcript_id "CUFF.50315.1"; FPKM "88.8131808291"; frac "1.000000"; conf_lo "59.611587"; conf_hi "118.014775"; cov "5.676136"; +chr13 Cufflinks exon 5869125 5869300 1000 . . gene_id "CUFF.50315"; transcript_id "CUFF.50315.1"; exon_number "1"; FPKM "88.8131808291"; frac "1.000000"; conf_lo "59.611587"; conf_hi "118.014775"; cov "5.676136"; +chr13 Cufflinks transcript 5869455 5869484 1000 . . gene_id "CUFF.50317"; transcript_id "CUFF.50317.1"; FPKM "133.7631356353"; frac "1.000000"; conf_lo "46.960728"; conf_hi "220.565544"; cov "8.548931"; +chr13 Cufflinks exon 5869455 5869484 1000 . . gene_id "CUFF.50317"; transcript_id "CUFF.50317.1"; exon_number "1"; FPKM "133.7631356353"; frac "1.000000"; conf_lo "46.960728"; conf_hi "220.565544"; cov "8.548931"; +chr13 Cufflinks transcript 5869555 5869581 1000 . . gene_id "CUFF.50319"; transcript_id "CUFF.50319.1"; FPKM "125.1741327402"; frac "1.000000"; conf_lo "36.662655"; conf_hi "213.685611"; cov "8.000000"; +chr13 Cufflinks exon 5869555 5869581 1000 . . gene_id "CUFF.50319"; transcript_id "CUFF.50319.1"; exon_number "1"; FPKM "125.1741327402"; frac "1.000000"; conf_lo "36.662655"; conf_hi "213.685611"; cov "8.000000"; +chr13 Cufflinks transcript 6205097 6205155 1000 . . gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254"; +chr13 Cufflinks exon 6205097 6205155 1000 . . gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; exon_number "1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254"; +chr13 Cufflinks transcript 6227260 6227293 1000 . . gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234"; +chr13 Cufflinks exon 6227260 6227293 1000 . . gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; exon_number "1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234"; +chr13 Cufflinks transcript 6553021 6553051 1000 . . gene_id "CUFF.50325"; transcript_id "CUFF.50325.1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935"; +chr13 Cufflinks exon 6553021 6553051 1000 . . gene_id "CUFF.50325"; transcript_id "CUFF.50325.1"; exon_number "1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935"; +chr13 Cufflinks transcript 6576412 6576471 1000 . . gene_id "CUFF.50327"; transcript_id "CUFF.50327.1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.997173"; cov "0.900000"; +chr13 Cufflinks exon 6576412 6576471 1000 . . gene_id "CUFF.50327"; transcript_id "CUFF.50327.1"; exon_number "1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.997173"; cov "0.900000"; +chr13 Cufflinks transcript 6576625 6576734 1000 . . gene_id "CUFF.50329"; transcript_id "CUFF.50329.1"; FPKM "26.8839898726"; frac "1.000000"; conf_lo "6.561604"; conf_hi "47.206376"; cov "1.718182"; +chr13 Cufflinks exon 6576625 6576734 1000 . . gene_id "CUFF.50329"; transcript_id "CUFF.50329.1"; exon_number "1"; FPKM "26.8839898726"; frac "1.000000"; conf_lo "6.561604"; conf_hi "47.206376"; cov "1.718182"; +chr13 Cufflinks transcript 6577727 6577820 1000 . . gene_id "CUFF.50331"; transcript_id "CUFF.50331.1"; FPKM "31.4599881488"; frac "1.000000"; conf_lo "7.678472"; conf_hi "55.241504"; cov "2.010638"; +chr13 Cufflinks exon 6577727 6577820 1000 . . gene_id "CUFF.50331"; transcript_id "CUFF.50331.1"; exon_number "1"; FPKM "31.4599881488"; frac "1.000000"; conf_lo "7.678472"; conf_hi "55.241504"; cov "2.010638"; +chr13 Cufflinks transcript 6579706 6579858 1000 . . gene_id "CUFF.50333"; transcript_id "CUFF.50333.1"; FPKM "11.0447764182"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.089553"; cov "0.705882"; +chr13 Cufflinks exon 6579706 6579858 1000 . . gene_id "CUFF.50333"; transcript_id "CUFF.50333.1"; exon_number "1"; FPKM "11.0447764182"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.089553"; cov "0.705882"; +chr13 Cufflinks transcript 6580126 6580152 1000 . . gene_id "CUFF.50335"; transcript_id "CUFF.50335.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 6580126 6580152 1000 . . gene_id "CUFF.50335"; transcript_id "CUFF.50335.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 6580257 6580295 1000 . . gene_id "CUFF.50337"; transcript_id "CUFF.50337.1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks exon 6580257 6580295 1000 . . gene_id "CUFF.50337"; transcript_id "CUFF.50337.1"; exon_number "1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks transcript 6583845 6585843 1000 - . gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818"; +chr13 Cufflinks exon 6583845 6583946 1000 - . gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; exon_number "1"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818"; +chr13 Cufflinks exon 6585726 6585843 1000 - . gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; exon_number "2"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818"; +chr13 Cufflinks transcript 6586295 6587966 1000 - . gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727"; +chr13 Cufflinks exon 6586295 6586359 1000 - . gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; exon_number "1"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727"; +chr13 Cufflinks exon 6587735 6587966 1000 - . gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; exon_number "2"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727"; +chr13 Cufflinks transcript 6588113 6588703 1000 . . gene_id "CUFF.50343"; transcript_id "CUFF.50343.1"; FPKM "42.8896140100"; frac "1.000000"; conf_lo "31.815563"; conf_hi "53.963665"; cov "2.741117"; +chr13 Cufflinks exon 6588113 6588703 1000 . . gene_id "CUFF.50343"; transcript_id "CUFF.50343.1"; exon_number "1"; FPKM "42.8896140100"; frac "1.000000"; conf_lo "31.815563"; conf_hi "53.963665"; cov "2.741117"; +chr13 Cufflinks transcript 6588763 6588911 1000 . . gene_id "CUFF.50345"; transcript_id "CUFF.50345.1"; FPKM "31.1885213287"; frac "1.000000"; conf_lo "12.381135"; conf_hi "49.995907"; cov "1.993289"; +chr13 Cufflinks exon 6588763 6588911 1000 . . gene_id "CUFF.50345"; transcript_id "CUFF.50345.1"; exon_number "1"; FPKM "31.1885213287"; frac "1.000000"; conf_lo "12.381135"; conf_hi "49.995907"; cov "1.993289"; +chr13 Cufflinks transcript 6588964 6589091 1000 . . gene_id "CUFF.50347"; transcript_id "CUFF.50347.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.403919"; cov "0.843750"; +chr13 Cufflinks exon 6588964 6589091 1000 . . gene_id "CUFF.50347"; transcript_id "CUFF.50347.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.403919"; cov "0.843750"; +chr13 Cufflinks transcript 6589153 6589383 1000 . . gene_id "CUFF.50349"; transcript_id "CUFF.50349.1"; FPKM "12.8018999393"; frac "1.000000"; conf_lo "3.124573"; conf_hi "22.479227"; cov "0.818182"; +chr13 Cufflinks exon 6589153 6589383 1000 . . gene_id "CUFF.50349"; transcript_id "CUFF.50349.1"; exon_number "1"; FPKM "12.8018999393"; frac "1.000000"; conf_lo "3.124573"; conf_hi "22.479227"; cov "0.818182"; +chr13 Cufflinks transcript 6589994 6590086 1000 . . gene_id "CUFF.50351"; transcript_id "CUFF.50351.1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645"; +chr13 Cufflinks exon 6589994 6590086 1000 . . gene_id "CUFF.50351"; transcript_id "CUFF.50351.1"; exon_number "1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645"; +chr13 Cufflinks transcript 6590329 6590359 1000 . . gene_id "CUFF.50353"; transcript_id "CUFF.50353.1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935"; +chr13 Cufflinks exon 6590329 6590359 1000 . . gene_id "CUFF.50353"; transcript_id "CUFF.50353.1"; exon_number "1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935"; +chr13 Cufflinks transcript 6590592 6590645 1000 . . gene_id "CUFF.50355"; transcript_id "CUFF.50355.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.774636"; cov "1.000000"; +chr13 Cufflinks exon 6590592 6590645 1000 . . gene_id "CUFF.50355"; transcript_id "CUFF.50355.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.774636"; cov "1.000000"; +chr13 Cufflinks transcript 6590963 6591056 1000 . . gene_id "CUFF.50357"; transcript_id "CUFF.50357.1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.954272"; cov "1.148936"; +chr13 Cufflinks exon 6590963 6591056 1000 . . gene_id "CUFF.50357"; transcript_id "CUFF.50357.1"; exon_number "1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.954272"; cov "1.148936"; +chr13 Cufflinks transcript 6591182 6591208 1000 . . gene_id "CUFF.50359"; transcript_id "CUFF.50359.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 6591182 6591208 1000 . . gene_id "CUFF.50359"; transcript_id "CUFF.50359.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 6591662 6591724 1000 . . gene_id "CUFF.50361"; transcript_id "CUFF.50361.1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143"; +chr13 Cufflinks exon 6591662 6591724 1000 . . gene_id "CUFF.50361"; transcript_id "CUFF.50361.1"; exon_number "1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143"; +chr13 Cufflinks transcript 6592773 6592874 1000 . . gene_id "CUFF.50363"; transcript_id "CUFF.50363.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118"; +chr13 Cufflinks exon 6592773 6592874 1000 . . gene_id "CUFF.50363"; transcript_id "CUFF.50363.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118"; +chr13 Cufflinks transcript 6580385 6581757 1000 - . gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542"; +chr13 Cufflinks exon 6580385 6580838 1000 - . gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; exon_number "1"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542"; +chr13 Cufflinks exon 6581649 6581757 1000 - . gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; exon_number "2"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542"; +chr13 Cufflinks transcript 6594213 6594242 1000 . . gene_id "CUFF.50367"; transcript_id "CUFF.50367.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000"; +chr13 Cufflinks exon 6594213 6594242 1000 . . gene_id "CUFF.50367"; transcript_id "CUFF.50367.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000"; +chr13 Cufflinks transcript 6594897 6594938 1000 . . gene_id "CUFF.50369"; transcript_id "CUFF.50369.1"; FPKM "20.1172713332"; frac "1.000000"; conf_lo "0.000000"; conf_hi "48.567389"; cov "1.285714"; +chr13 Cufflinks exon 6594897 6594938 1000 . . gene_id "CUFF.50369"; transcript_id "CUFF.50369.1"; exon_number "1"; FPKM "20.1172713332"; frac "1.000000"; conf_lo "0.000000"; conf_hi "48.567389"; cov "1.285714"; +chr13 Cufflinks transcript 6594742 6594836 1000 . . gene_id "CUFF.50371"; transcript_id "CUFF.50371.1"; FPKM "13.3409273052"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.745703"; cov "0.852632"; +chr13 Cufflinks exon 6594742 6594836 1000 . . gene_id "CUFF.50371"; transcript_id "CUFF.50371.1"; exon_number "1"; FPKM "13.3409273052"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.745703"; cov "0.852632"; +chr13 Cufflinks transcript 6595072 6595132 1000 . . gene_id "CUFF.50373"; transcript_id "CUFF.50373.1"; FPKM "20.7768539999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.767898"; cov "1.327869"; +chr13 Cufflinks exon 6595072 6595132 1000 . . gene_id "CUFF.50373"; transcript_id "CUFF.50373.1"; exon_number "1"; FPKM "20.7768539999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.767898"; cov "1.327869"; +chr13 Cufflinks transcript 6595199 6595225 1000 . . gene_id "CUFF.50375"; transcript_id "CUFF.50375.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 6595199 6595225 1000 . . gene_id "CUFF.50375"; transcript_id "CUFF.50375.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 6595246 6595272 1000 . . gene_id "CUFF.50377"; transcript_id "CUFF.50377.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 6595246 6595272 1000 . . gene_id "CUFF.50377"; transcript_id "CUFF.50377.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 6598001 6598027 1000 . . gene_id "CUFF.50379"; transcript_id "CUFF.50379.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 6598001 6598027 1000 . . gene_id "CUFF.50379"; transcript_id "CUFF.50379.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 6601936 6601990 1000 . . gene_id "CUFF.50381"; transcript_id "CUFF.50381.1"; FPKM "15.3622799272"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.087825"; cov "0.981818"; +chr13 Cufflinks exon 6601936 6601990 1000 . . gene_id "CUFF.50381"; transcript_id "CUFF.50381.1"; exon_number "1"; FPKM "15.3622799272"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.087825"; cov "0.981818"; +chr13 Cufflinks transcript 6604226 6604297 1000 . . gene_id "CUFF.50383"; transcript_id "CUFF.50383.1"; FPKM "17.6026124166"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.928358"; cov "1.125000"; +chr13 Cufflinks exon 6604226 6604297 1000 . . gene_id "CUFF.50383"; transcript_id "CUFF.50383.1"; exon_number "1"; FPKM "17.6026124166"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.928358"; cov "1.125000"; +chr13 Cufflinks transcript 6616305 6616331 1000 . . gene_id "CUFF.50385"; transcript_id "CUFF.50385.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks exon 6616305 6616331 1000 . . gene_id "CUFF.50385"; transcript_id "CUFF.50385.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks transcript 6616841 6616921 1000 . . gene_id "CUFF.50387"; transcript_id "CUFF.50387.1"; FPKM "5.2155888642"; frac "1.000000"; conf_lo "0.000000"; conf_hi "15.646767"; cov "0.333333"; +chr13 Cufflinks exon 6616841 6616921 1000 . . gene_id "CUFF.50387"; transcript_id "CUFF.50387.1"; exon_number "1"; FPKM "5.2155888642"; frac "1.000000"; conf_lo "0.000000"; conf_hi "15.646767"; cov "0.333333"; +chr13 Cufflinks transcript 6617878 6617990 1000 . . gene_id "CUFF.50389"; transcript_id "CUFF.50389.1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814"; +chr13 Cufflinks exon 6617878 6617990 1000 . . gene_id "CUFF.50389"; transcript_id "CUFF.50389.1"; exon_number "1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814"; +chr13 Cufflinks transcript 6618127 6618156 1000 . . gene_id "CUFF.50391"; transcript_id "CUFF.50391.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000"; +chr13 Cufflinks exon 6618127 6618156 1000 . . gene_id "CUFF.50391"; transcript_id "CUFF.50391.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000"; +chr13 Cufflinks transcript 6618432 6618463 1000 . . gene_id "CUFF.50393"; transcript_id "CUFF.50393.1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500"; +chr13 Cufflinks exon 6618432 6618463 1000 . . gene_id "CUFF.50393"; transcript_id "CUFF.50393.1"; exon_number "1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500"; +chr13 Cufflinks transcript 6618765 6618809 1000 . . gene_id "CUFF.50395"; transcript_id "CUFF.50395.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "60.685374"; cov "1.800000"; +chr13 Cufflinks exon 6618765 6618809 1000 . . gene_id "CUFF.50395"; transcript_id "CUFF.50395.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "60.685374"; cov "1.800000"; +chr13 Cufflinks transcript 6620226 6620259 1000 . . gene_id "CUFF.50397"; transcript_id "CUFF.50397.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.995010"; cov "1.588235"; +chr13 Cufflinks exon 6620226 6620259 1000 . . gene_id "CUFF.50397"; transcript_id "CUFF.50397.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.995010"; cov "1.588235"; +chr13 Cufflinks transcript 6795860 6795886 1000 . . gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 6795860 6795886 1000 . . gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 7155940 7155966 1000 . . gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 7155940 7155966 1000 . . gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 7676033 7676123 1000 . . gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks exon 7676033 7676123 1000 . . gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks transcript 8202861 8202907 1000 . . gene_id "CUFF.50405"; transcript_id "CUFF.50405.1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "43.400646"; cov "1.148936"; +chr13 Cufflinks exon 8202861 8202907 1000 . . gene_id "CUFF.50405"; transcript_id "CUFF.50405.1"; exon_number "1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "43.400646"; cov "1.148936"; +chr13 Cufflinks transcript 8210506 8210549 1000 . . gene_id "CUFF.50407"; transcript_id "CUFF.50407.1"; FPKM "19.2028499090"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.359781"; cov "1.227273"; +chr13 Cufflinks exon 8210506 8210549 1000 . . gene_id "CUFF.50407"; transcript_id "CUFF.50407.1"; exon_number "1"; FPKM "19.2028499090"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.359781"; cov "1.227273"; +chr13 Cufflinks transcript 8240024 8240081 1000 . . gene_id "CUFF.50409"; transcript_id "CUFF.50409.1"; FPKM "14.5676792413"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.169489"; cov "0.931034"; +chr13 Cufflinks exon 8240024 8240081 1000 . . gene_id "CUFF.50409"; transcript_id "CUFF.50409.1"; exon_number "1"; FPKM "14.5676792413"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.169489"; cov "0.931034"; +chr13 Cufflinks transcript 8277443 8277522 1000 . . gene_id "CUFF.50411"; transcript_id "CUFF.50411.1"; FPKM "10.5615674500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.497879"; cov "0.675000"; +chr13 Cufflinks exon 8277443 8277522 1000 . . gene_id "CUFF.50411"; transcript_id "CUFF.50411.1"; exon_number "1"; FPKM "10.5615674500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.497879"; cov "0.675000"; +chr13 Cufflinks transcript 8277606 8277673 1000 . . gene_id "CUFF.50413"; transcript_id "CUFF.50413.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.701494"; cov "1.588235"; +chr13 Cufflinks exon 8277606 8277673 1000 . . gene_id "CUFF.50413"; transcript_id "CUFF.50413.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.701494"; cov "1.588235"; +chr13 Cufflinks transcript 8277822 8277848 1000 . . gene_id "CUFF.50415"; transcript_id "CUFF.50415.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8277822 8277848 1000 . . gene_id "CUFF.50415"; transcript_id "CUFF.50415.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8277918 8277977 1000 . . gene_id "CUFF.50417"; transcript_id "CUFF.50417.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.514030"; cov "1.350000"; +chr13 Cufflinks exon 8277918 8277977 1000 . . gene_id "CUFF.50417"; transcript_id "CUFF.50417.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.514030"; cov "1.350000"; +chr13 Cufflinks transcript 8278095 8278121 1000 . . gene_id "CUFF.50419"; transcript_id "CUFF.50419.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8278095 8278121 1000 . . gene_id "CUFF.50419"; transcript_id "CUFF.50419.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8278201 8278350 1000 . . gene_id "CUFF.50421"; transcript_id "CUFF.50421.1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "1.486686"; conf_hi "26.677494"; cov "0.900000"; +chr13 Cufflinks exon 8278201 8278350 1000 . . gene_id "CUFF.50421"; transcript_id "CUFF.50421.1"; exon_number "1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "1.486686"; conf_hi "26.677494"; cov "0.900000"; +chr13 Cufflinks transcript 8278906 8278932 1000 . . gene_id "CUFF.50423"; transcript_id "CUFF.50423.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks exon 8278906 8278932 1000 . . gene_id "CUFF.50423"; transcript_id "CUFF.50423.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks transcript 8281673 8281699 1000 . . gene_id "CUFF.50425"; transcript_id "CUFF.50425.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8281673 8281699 1000 . . gene_id "CUFF.50425"; transcript_id "CUFF.50425.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8311626 8311652 1000 . . gene_id "CUFF.50427"; transcript_id "CUFF.50427.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8311626 8311652 1000 . . gene_id "CUFF.50427"; transcript_id "CUFF.50427.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8321948 8321974 1000 . . gene_id "CUFF.50429"; transcript_id "CUFF.50429.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8321948 8321974 1000 . . gene_id "CUFF.50429"; transcript_id "CUFF.50429.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8330761 8330829 1000 . . gene_id "CUFF.50431"; transcript_id "CUFF.50431.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609"; +chr13 Cufflinks exon 8330761 8330829 1000 . . gene_id "CUFF.50431"; transcript_id "CUFF.50431.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609"; +chr13 Cufflinks transcript 8334495 8335002 1000 . . gene_id "CUFF.50433"; transcript_id "CUFF.50433.1"; FPKM "24.1169650432"; frac "1.000000"; conf_lo "15.160149"; conf_hi "33.073781"; cov "1.541339"; +chr13 Cufflinks exon 8334495 8335002 1000 . . gene_id "CUFF.50433"; transcript_id "CUFF.50433.1"; exon_number "1"; FPKM "24.1169650432"; frac "1.000000"; conf_lo "15.160149"; conf_hi "33.073781"; cov "1.541339"; +chr13 Cufflinks transcript 8335517 8335639 1000 . . gene_id "CUFF.50435"; transcript_id "CUFF.50435.1"; FPKM "13.7386243251"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.477249"; cov "0.878049"; +chr13 Cufflinks exon 8335517 8335639 1000 . . gene_id "CUFF.50435"; transcript_id "CUFF.50435.1"; exon_number "1"; FPKM "13.7386243251"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.477249"; cov "0.878049"; +chr13 Cufflinks transcript 8390965 8390991 1000 . . gene_id "CUFF.50437"; transcript_id "CUFF.50437.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8390965 8390991 1000 . . gene_id "CUFF.50437"; transcript_id "CUFF.50437.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8431938 8432046 1000 . . gene_id "CUFF.50439"; transcript_id "CUFF.50439.1"; FPKM "15.5032182752"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.006437"; cov "0.990826"; +chr13 Cufflinks exon 8431938 8432046 1000 . . gene_id "CUFF.50439"; transcript_id "CUFF.50439.1"; exon_number "1"; FPKM "15.5032182752"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.006437"; cov "0.990826"; +chr13 Cufflinks transcript 8431688 8431754 1000 . . gene_id "CUFF.50441"; transcript_id "CUFF.50441.1"; FPKM "12.6108268059"; frac "1.000000"; conf_lo "0.000000"; conf_hi "30.445229"; cov "0.805970"; +chr13 Cufflinks exon 8431688 8431754 1000 . . gene_id "CUFF.50441"; transcript_id "CUFF.50441.1"; exon_number "1"; FPKM "12.6108268059"; frac "1.000000"; conf_lo "0.000000"; conf_hi "30.445229"; cov "0.805970"; +chr13 Cufflinks transcript 8432289 8432315 1000 . . gene_id "CUFF.50443"; transcript_id "CUFF.50443.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 8432289 8432315 1000 . . gene_id "CUFF.50443"; transcript_id "CUFF.50443.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 8432115 8432188 1000 . . gene_id "CUFF.50445"; transcript_id "CUFF.50445.1"; FPKM "11.4179107567"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.565275"; cov "0.729730"; +chr13 Cufflinks exon 8432115 8432188 1000 . . gene_id "CUFF.50445"; transcript_id "CUFF.50445.1"; exon_number "1"; FPKM "11.4179107567"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.565275"; cov "0.729730"; +chr13 Cufflinks transcript 8463173 8463199 1000 . . gene_id "CUFF.50447"; transcript_id "CUFF.50447.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8463173 8463199 1000 . . gene_id "CUFF.50447"; transcript_id "CUFF.50447.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8482167 8482193 1000 . . gene_id "CUFF.50449"; transcript_id "CUFF.50449.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8482167 8482193 1000 . . gene_id "CUFF.50449"; transcript_id "CUFF.50449.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8518188 8518214 1000 . . gene_id "CUFF.50451"; transcript_id "CUFF.50451.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8518188 8518214 1000 . . gene_id "CUFF.50451"; transcript_id "CUFF.50451.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8619978 8620005 1000 . . gene_id "CUFF.50453"; transcript_id "CUFF.50453.1"; FPKM "30.1759069999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "72.851084"; cov "1.928571"; +chr13 Cufflinks exon 8619978 8620005 1000 . . gene_id "CUFF.50453"; transcript_id "CUFF.50453.1"; exon_number "1"; FPKM "30.1759069999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "72.851084"; cov "1.928571"; +chr13 Cufflinks transcript 8669464 8669490 1000 . . gene_id "CUFF.50455"; transcript_id "CUFF.50455.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8669464 8669490 1000 . . gene_id "CUFF.50455"; transcript_id "CUFF.50455.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8705396 8705459 1000 . . gene_id "CUFF.50457"; transcript_id "CUFF.50457.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750"; +chr13 Cufflinks exon 8705396 8705459 1000 . . gene_id "CUFF.50457"; transcript_id "CUFF.50457.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750"; +chr13 Cufflinks transcript 8719319 8719345 1000 . . gene_id "CUFF.50459"; transcript_id "CUFF.50459.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8719319 8719345 1000 . . gene_id "CUFF.50459"; transcript_id "CUFF.50459.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8766868 8767005 1000 . . gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609"; +chr13 Cufflinks exon 8766868 8767005 1000 . . gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609"; +chr13 Cufflinks transcript 8767194 8767393 1000 . . gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000"; +chr13 Cufflinks exon 8767194 8767393 1000 . . gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000"; +chr13 Cufflinks transcript 8767461 8767531 1000 . . gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845"; +chr13 Cufflinks exon 8767461 8767531 1000 . . gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845"; +chr13 Cufflinks transcript 8767695 8767885 1000 . . gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890"; +chr13 Cufflinks exon 8767695 8767885 1000 . . gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; exon_number "1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890"; +chr13 Cufflinks transcript 8767947 8767992 1000 . . gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870"; +chr13 Cufflinks exon 8767947 8767992 1000 . . gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; exon_number "1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870"; +chr13 Cufflinks transcript 8784118 8784193 1000 . . gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789"; +chr13 Cufflinks exon 8784118 8784193 1000 . . gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; exon_number "1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789"; +chr13 Cufflinks transcript 8802391 8802417 1000 . . gene_id "CUFF.50473"; transcript_id "CUFF.50473.1"; FPKM "109.5273661476"; frac "1.000000"; conf_lo "26.732460"; conf_hi "192.322273"; cov "7.000000"; +chr13 Cufflinks exon 8802391 8802417 1000 . . gene_id "CUFF.50473"; transcript_id "CUFF.50473.1"; exon_number "1"; FPKM "109.5273661476"; frac "1.000000"; conf_lo "26.732460"; conf_hi "192.322273"; cov "7.000000"; +chr13 Cufflinks transcript 8802581 8802610 1000 . . gene_id "CUFF.50475"; transcript_id "CUFF.50475.1"; FPKM "154.9029892659"; frac "1.000000"; conf_lo "61.492972"; conf_hi "248.313006"; cov "9.900000"; +chr13 Cufflinks exon 8802581 8802610 1000 . . gene_id "CUFF.50475"; transcript_id "CUFF.50475.1"; exon_number "1"; FPKM "154.9029892659"; frac "1.000000"; conf_lo "61.492972"; conf_hi "248.313006"; cov "9.900000"; +chr13 Cufflinks transcript 8803098 8803283 1000 . . gene_id "CUFF.50477"; transcript_id "CUFF.50477.1"; FPKM "18.1704386236"; frac "1.000000"; conf_lo "5.321998"; conf_hi "31.018879"; cov "1.161290"; +chr13 Cufflinks exon 8803098 8803283 1000 . . gene_id "CUFF.50477"; transcript_id "CUFF.50477.1"; exon_number "1"; FPKM "18.1704386236"; frac "1.000000"; conf_lo "5.321998"; conf_hi "31.018879"; cov "1.161290"; +chr13 Cufflinks transcript 8803340 8803703 1000 . . gene_id "CUFF.50479"; transcript_id "CUFF.50479.1"; FPKM "12.7584623804"; frac "1.000000"; conf_lo "5.062328"; conf_hi "20.454597"; cov "0.815406"; +chr13 Cufflinks exon 8803340 8803703 1000 . . gene_id "CUFF.50479"; transcript_id "CUFF.50479.1"; exon_number "1"; FPKM "12.7584623804"; frac "1.000000"; conf_lo "5.062328"; conf_hi "20.454597"; cov "0.815406"; +chr13 Cufflinks transcript 8803760 8819743 1000 + . gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060"; +chr13 Cufflinks exon 8803760 8803879 1000 + . gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; exon_number "1"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060"; +chr13 Cufflinks exon 8819697 8819743 1000 + . gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; exon_number "2"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060"; +chr13 Cufflinks transcript 8819122 8819153 1000 . . gene_id "CUFF.50483"; transcript_id "CUFF.50483.1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500"; +chr13 Cufflinks exon 8819122 8819153 1000 . . gene_id "CUFF.50483"; transcript_id "CUFF.50483.1"; exon_number "1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500"; +chr13 Cufflinks transcript 8831114 8831142 1000 . . gene_id "CUFF.50485"; transcript_id "CUFF.50485.1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069"; +chr13 Cufflinks exon 8831114 8831142 1000 . . gene_id "CUFF.50485"; transcript_id "CUFF.50485.1"; exon_number "1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069"; +chr13 Cufflinks transcript 8831216 8831252 1000 . . gene_id "CUFF.50487"; transcript_id "CUFF.50487.1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189"; +chr13 Cufflinks exon 8831216 8831252 1000 . . gene_id "CUFF.50487"; transcript_id "CUFF.50487.1"; exon_number "1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189"; +chr13 Cufflinks transcript 8831404 8831522 1000 . . gene_id "CUFF.50489"; transcript_id "CUFF.50489.1"; FPKM "17.7505335293"; frac "1.000000"; conf_lo "1.873974"; conf_hi "33.627093"; cov "1.134454"; +chr13 Cufflinks exon 8831404 8831522 1000 . . gene_id "CUFF.50489"; transcript_id "CUFF.50489.1"; exon_number "1"; FPKM "17.7505335293"; frac "1.000000"; conf_lo "1.873974"; conf_hi "33.627093"; cov "1.134454"; +chr13 Cufflinks transcript 8849862 8849935 1000 . . gene_id "CUFF.50491"; transcript_id "CUFF.50491.1"; FPKM "17.1268661351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.903268"; cov "1.094595"; +chr13 Cufflinks exon 8849862 8849935 1000 . . gene_id "CUFF.50491"; transcript_id "CUFF.50491.1"; exon_number "1"; FPKM "17.1268661351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.903268"; cov "1.094595"; +chr13 Cufflinks transcript 8850038 8850347 1000 . . gene_id "CUFF.50493"; transcript_id "CUFF.50493.1"; FPKM "9.5394802774"; frac "1.000000"; conf_lo "2.328311"; conf_hi "16.750650"; cov "0.609677"; +chr13 Cufflinks exon 8850038 8850347 1000 . . gene_id "CUFF.50493"; transcript_id "CUFF.50493.1"; exon_number "1"; FPKM "9.5394802774"; frac "1.000000"; conf_lo "2.328311"; conf_hi "16.750650"; cov "0.609677"; +chr13 Cufflinks transcript 8864952 8864979 1000 . . gene_id "CUFF.50495"; transcript_id "CUFF.50495.1"; FPKM "75.4397674996"; frac "1.000000"; conf_lo "7.964388"; conf_hi "142.915147"; cov "4.821429"; +chr13 Cufflinks exon 8864952 8864979 1000 . . gene_id "CUFF.50495"; transcript_id "CUFF.50495.1"; exon_number "1"; FPKM "75.4397674996"; frac "1.000000"; conf_lo "7.964388"; conf_hi "142.915147"; cov "4.821429"; +chr13 Cufflinks transcript 8855128 8864773 1000 - . gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091"; +chr13 Cufflinks exon 8855128 8855158 1000 - . gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; exon_number "1"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091"; +chr13 Cufflinks exon 8864739 8864773 1000 - . gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; exon_number "2"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091"; +chr13 Cufflinks transcript 8965678 8965704 1000 . . gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8965678 8965704 1000 . . gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8972036 8972065 1000 . . gene_id "CUFF.50501"; transcript_id "CUFF.50501.1"; FPKM "112.6567194661"; frac "1.000000"; conf_lo "32.996389"; conf_hi "192.317050"; cov "7.200000"; +chr13 Cufflinks exon 8972036 8972065 1000 . . gene_id "CUFF.50501"; transcript_id "CUFF.50501.1"; exon_number "1"; FPKM "112.6567194661"; frac "1.000000"; conf_lo "32.996389"; conf_hi "192.317050"; cov "7.200000"; +chr13 Cufflinks transcript 9133705 9133859 1000 . . gene_id "CUFF.50503"; transcript_id "CUFF.50503.1"; FPKM "8.1766973806"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.618334"; cov "0.522581"; +chr13 Cufflinks exon 9133705 9133859 1000 . . gene_id "CUFF.50503"; transcript_id "CUFF.50503.1"; exon_number "1"; FPKM "8.1766973806"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.618334"; cov "0.522581"; +chr13 Cufflinks transcript 9134178 9134256 1000 . . gene_id "CUFF.50505"; transcript_id "CUFF.50505.1"; FPKM "10.6952581772"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.820637"; cov "0.683544"; +chr13 Cufflinks exon 9134178 9134256 1000 . . gene_id "CUFF.50505"; transcript_id "CUFF.50505.1"; exon_number "1"; FPKM "10.6952581772"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.820637"; cov "0.683544"; +chr13 Cufflinks transcript 9272120 9272153 1000 . . gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350"; +chr13 Cufflinks exon 9272120 9272153 1000 . . gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; exon_number "1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350"; +chr13 Cufflinks transcript 9169898 9172437 1000 + . gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786"; +chr13 Cufflinks exon 9169898 9169928 1000 + . gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; exon_number "1"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786"; +chr13 Cufflinks exon 9172357 9172437 1000 + . gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; exon_number "2"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786"; +chr13 Cufflinks transcript 9171841 9172220 1000 . . gene_id "CUFF.50511"; transcript_id "CUFF.50511.1"; FPKM "108.9509063258"; frac "1.000000"; conf_lo "86.939499"; conf_hi "130.962313"; cov "6.963158"; +chr13 Cufflinks exon 9171841 9172220 1000 . . gene_id "CUFF.50511"; transcript_id "CUFF.50511.1"; exon_number "1"; FPKM "108.9509063258"; frac "1.000000"; conf_lo "86.939499"; conf_hi "130.962313"; cov "6.963158"; +chr13 Cufflinks transcript 9172647 9173652 1000 . . gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553"; +chr13 Cufflinks exon 9172647 9173652 1000 . . gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; exon_number "1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553"; +chr13 Cufflinks transcript 9277893 9277953 1000 . . gene_id "CUFF.50515"; transcript_id "CUFF.50515.1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246"; +chr13 Cufflinks exon 9277893 9277953 1000 . . gene_id "CUFF.50515"; transcript_id "CUFF.50515.1"; exon_number "1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246"; +chr13 Cufflinks transcript 9278033 9278094 1000 . . gene_id "CUFF.50517"; transcript_id "CUFF.50517.1"; FPKM "13.6278289677"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.900490"; cov "0.870968"; +chr13 Cufflinks exon 9278033 9278094 1000 . . gene_id "CUFF.50517"; transcript_id "CUFF.50517.1"; exon_number "1"; FPKM "13.6278289677"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.900490"; cov "0.870968"; +chr13 Cufflinks transcript 9278482 9278551 1000 . . gene_id "CUFF.50519"; transcript_id "CUFF.50519.1"; FPKM "18.1055441999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.012026"; cov "1.157143"; +chr13 Cufflinks exon 9278482 9278551 1000 . . gene_id "CUFF.50519"; transcript_id "CUFF.50519.1"; exon_number "1"; FPKM "18.1055441999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.012026"; cov "1.157143"; +chr13 Cufflinks transcript 9278167 9278308 1000 . . gene_id "CUFF.50521"; transcript_id "CUFF.50521.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "3.275634"; conf_hi "32.425439"; cov "1.140845"; +chr13 Cufflinks exon 9278167 9278308 1000 . . gene_id "CUFF.50521"; transcript_id "CUFF.50521.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "3.275634"; conf_hi "32.425439"; cov "1.140845"; +chr13 Cufflinks transcript 9346823 9346849 1000 . . gene_id "CUFF.50523"; transcript_id "CUFF.50523.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9346823 9346849 1000 . . gene_id "CUFF.50523"; transcript_id "CUFF.50523.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9373600 9373693 1000 . . gene_id "CUFF.50525"; transcript_id "CUFF.50525.1"; FPKM "8.9885680425"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.700323"; cov "0.574468"; +chr13 Cufflinks exon 9373600 9373693 1000 . . gene_id "CUFF.50525"; transcript_id "CUFF.50525.1"; exon_number "1"; FPKM "8.9885680425"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.700323"; cov "0.574468"; +chr13 Cufflinks transcript 9353602 9373527 1000 - . gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462"; +chr13 Cufflinks exon 9353602 9353648 1000 - . gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; exon_number "1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462"; +chr13 Cufflinks exon 9373497 9373527 1000 - . gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; exon_number "2"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462"; +chr13 Cufflinks transcript 9386521 9386547 1000 . . gene_id "CUFF.50529"; transcript_id "CUFF.50529.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9386521 9386547 1000 . . gene_id "CUFF.50529"; transcript_id "CUFF.50529.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9391996 9392202 1000 . . gene_id "CUFF.50531"; transcript_id "CUFF.50531.1"; FPKM "12.2404495852"; frac "1.000000"; conf_lo "2.244186"; conf_hi "22.236713"; cov "0.782299"; +chr13 Cufflinks exon 9391996 9392202 1000 . . gene_id "CUFF.50531"; transcript_id "CUFF.50531.1"; exon_number "1"; FPKM "12.2404495852"; frac "1.000000"; conf_lo "2.244186"; conf_hi "22.236713"; cov "0.782299"; +chr13 Cufflinks transcript 9392422 9392467 1000 . . gene_id "CUFF.50533"; transcript_id "CUFF.50533.1"; FPKM "9.1839716956"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.551915"; cov "0.586957"; +chr13 Cufflinks exon 9392422 9392467 1000 . . gene_id "CUFF.50533"; transcript_id "CUFF.50533.1"; exon_number "1"; FPKM "9.1839716956"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.551915"; cov "0.586957"; +chr13 Cufflinks transcript 9392265 9392321 1000 . . gene_id "CUFF.50535"; transcript_id "CUFF.50535.1"; FPKM "14.8232525613"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.786497"; cov "0.947368"; +chr13 Cufflinks exon 9392265 9392321 1000 . . gene_id "CUFF.50535"; transcript_id "CUFF.50535.1"; exon_number "1"; FPKM "14.8232525613"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.786497"; cov "0.947368"; +chr13 Cufflinks transcript 9392577 9392603 1000 . . gene_id "CUFF.50537"; transcript_id "CUFF.50537.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9392577 9392603 1000 . . gene_id "CUFF.50537"; transcript_id "CUFF.50537.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9396631 9396825 1000 . . gene_id "CUFF.50539"; transcript_id "CUFF.50539.1"; FPKM "8.6659014974"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.331803"; cov "0.553846"; +chr13 Cufflinks exon 9396631 9396825 1000 . . gene_id "CUFF.50539"; transcript_id "CUFF.50539.1"; exon_number "1"; FPKM "8.6659014974"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.331803"; cov "0.553846"; +chr13 Cufflinks transcript 9397263 9397434 1000 . . gene_id "CUFF.50541"; transcript_id "CUFF.50541.1"; FPKM "17.1932493371"; frac "1.000000"; conf_lo "4.196374"; conf_hi "30.190124"; cov "1.098837"; +chr13 Cufflinks exon 9397263 9397434 1000 . . gene_id "CUFF.50541"; transcript_id "CUFF.50541.1"; exon_number "1"; FPKM "17.1932493371"; frac "1.000000"; conf_lo "4.196374"; conf_hi "30.190124"; cov "1.098837"; +chr13 Cufflinks transcript 9398210 9398294 1000 . . gene_id "CUFF.50543"; transcript_id "CUFF.50543.1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.998004"; cov "0.635294"; +chr13 Cufflinks exon 9398210 9398294 1000 . . gene_id "CUFF.50543"; transcript_id "CUFF.50543.1"; exon_number "1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.998004"; cov "0.635294"; +chr13 Cufflinks transcript 9406013 9406051 1000 . . gene_id "CUFF.50545"; transcript_id "CUFF.50545.1"; FPKM "10.8323768717"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.497131"; cov "0.692308"; +chr13 Cufflinks exon 9406013 9406051 1000 . . gene_id "CUFF.50545"; transcript_id "CUFF.50545.1"; exon_number "1"; FPKM "10.8323768717"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.497131"; cov "0.692308"; +chr13 Cufflinks transcript 9413644 9413670 1000 . . gene_id "CUFF.50547"; transcript_id "CUFF.50547.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9413644 9413670 1000 . . gene_id "CUFF.50547"; transcript_id "CUFF.50547.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9414053 9414143 1000 . . gene_id "CUFF.50549"; transcript_id "CUFF.50549.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks exon 9414053 9414143 1000 . . gene_id "CUFF.50549"; transcript_id "CUFF.50549.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks transcript 9415960 9416015 1000 . . gene_id "CUFF.50551"; transcript_id "CUFF.50551.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks exon 9415960 9416015 1000 . . gene_id "CUFF.50551"; transcript_id "CUFF.50551.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks transcript 9442325 9442351 1000 . . gene_id "CUFF.50553"; transcript_id "CUFF.50553.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9442325 9442351 1000 . . gene_id "CUFF.50553"; transcript_id "CUFF.50553.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9517895 9517921 1000 . . gene_id "CUFF.50555"; transcript_id "CUFF.50555.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9517895 9517921 1000 . . gene_id "CUFF.50555"; transcript_id "CUFF.50555.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9584154 9584180 1000 . . gene_id "CUFF.50558"; transcript_id "CUFF.50558.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks exon 9584154 9584180 1000 . . gene_id "CUFF.50558"; transcript_id "CUFF.50558.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks transcript 9583821 9583888 1000 . . gene_id "CUFF.50557"; transcript_id "CUFF.50557.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.997505"; cov "0.794118"; +chr13 Cufflinks exon 9583821 9583888 1000 . . gene_id "CUFF.50557"; transcript_id "CUFF.50557.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.997505"; cov "0.794118"; +chr13 Cufflinks transcript 9585768 9585937 1000 . . gene_id "CUFF.50561"; transcript_id "CUFF.50561.1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.880598"; cov "0.635294"; +chr13 Cufflinks exon 9585768 9585937 1000 . . gene_id "CUFF.50561"; transcript_id "CUFF.50561.1"; exon_number "1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.880598"; cov "0.635294"; +chr13 Cufflinks transcript 9586173 9593034 1000 - . gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks exon 9586173 9586218 1000 - . gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; exon_number "1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks exon 9592999 9593034 1000 - . gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; exon_number "2"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks transcript 9609217 9609243 1000 . . gene_id "CUFF.50566"; transcript_id "CUFF.50566.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9609217 9609243 1000 . . gene_id "CUFF.50566"; transcript_id "CUFF.50566.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9607682 9607717 1000 . . gene_id "CUFF.50565"; transcript_id "CUFF.50565.1"; FPKM "23.4701498888"; frac "1.000000"; conf_lo "0.000000"; conf_hi "56.661954"; cov "1.500000"; +chr13 Cufflinks exon 9607682 9607717 1000 . . gene_id "CUFF.50565"; transcript_id "CUFF.50565.1"; exon_number "1"; FPKM "23.4701498888"; frac "1.000000"; conf_lo "0.000000"; conf_hi "56.661954"; cov "1.500000"; +chr13 Cufflinks transcript 9678669 9678695 1000 . . gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9678669 9678695 1000 . . gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9667710 9667736 1000 . . gene_id "CUFF.50571"; transcript_id "CUFF.50571.1"; FPKM "140.7837465978"; frac "1.000000"; conf_lo "46.915532"; conf_hi "234.651961"; cov "8.997626"; +chr13 Cufflinks exon 9667710 9667736 1000 . . gene_id "CUFF.50571"; transcript_id "CUFF.50571.1"; exon_number "1"; FPKM "140.7837465978"; frac "1.000000"; conf_lo "46.915532"; conf_hi "234.651961"; cov "8.997626"; +chr13 Cufflinks transcript 9667815 9668061 1000 . . gene_id "CUFF.50573"; transcript_id "CUFF.50573.1"; FPKM "87.1763440808"; frac "1.000000"; conf_lo "62.754693"; conf_hi "111.597996"; cov "5.571525"; +chr13 Cufflinks exon 9667815 9668061 1000 . . gene_id "CUFF.50573"; transcript_id "CUFF.50573.1"; exon_number "1"; FPKM "87.1763440808"; frac "1.000000"; conf_lo "62.754693"; conf_hi "111.597996"; cov "5.571525"; +chr13 Cufflinks transcript 9668143 9668170 1000 . . gene_id "CUFF.50575"; transcript_id "CUFF.50575.1"; FPKM "82.8583537693"; frac "1.000000"; conf_lo "12.143066"; conf_hi "153.573642"; cov "5.295558"; +chr13 Cufflinks exon 9668143 9668170 1000 . . gene_id "CUFF.50575"; transcript_id "CUFF.50575.1"; exon_number "1"; FPKM "82.8583537693"; frac "1.000000"; conf_lo "12.143066"; conf_hi "153.573642"; cov "5.295558"; +chr13 Cufflinks transcript 9688931 9688970 1000 . . gene_id "CUFF.50577"; transcript_id "CUFF.50577.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks exon 9688931 9688970 1000 . . gene_id "CUFF.50577"; transcript_id "CUFF.50577.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks transcript 9684078 9685570 1000 . . gene_id "CUFF.50579"; transcript_id "CUFF.50579.1"; FPKM "107.1082431700"; frac "1.000000"; conf_lo "96.097777"; conf_hi "118.118710"; cov "6.845392"; +chr13 Cufflinks exon 9684078 9685570 1000 . . gene_id "CUFF.50579"; transcript_id "CUFF.50579.1"; exon_number "1"; FPKM "107.1082431700"; frac "1.000000"; conf_lo "96.097777"; conf_hi "118.118710"; cov "6.845392"; +chr13 Cufflinks transcript 9690151 9690234 1000 . . gene_id "CUFF.50581"; transcript_id "CUFF.50581.1"; FPKM "10.0586356666"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.283695"; cov "0.642857"; +chr13 Cufflinks exon 9690151 9690234 1000 . . gene_id "CUFF.50581"; transcript_id "CUFF.50581.1"; exon_number "1"; FPKM "10.0586356666"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.283695"; cov "0.642857"; +chr13 Cufflinks transcript 9694461 9694537 1000 . . gene_id "CUFF.50583"; transcript_id "CUFF.50583.1"; FPKM "16.4595856363"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.465478"; cov "1.051948"; +chr13 Cufflinks exon 9694461 9694537 1000 . . gene_id "CUFF.50583"; transcript_id "CUFF.50583.1"; exon_number "1"; FPKM "16.4595856363"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.465478"; cov "1.051948"; +chr13 Cufflinks transcript 9696900 9696976 1000 . . gene_id "CUFF.50585"; transcript_id "CUFF.50585.1"; FPKM "10.9730570909"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.491303"; cov "0.701299"; +chr13 Cufflinks exon 9696900 9696976 1000 . . gene_id "CUFF.50585"; transcript_id "CUFF.50585.1"; exon_number "1"; FPKM "10.9730570909"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.491303"; cov "0.701299"; +chr13 Cufflinks transcript 9725686 9725787 1000 . . gene_id "CUFF.50587"; transcript_id "CUFF.50587.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118"; +chr13 Cufflinks exon 9725686 9725787 1000 . . gene_id "CUFF.50587"; transcript_id "CUFF.50587.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118"; +chr13 Cufflinks transcript 9725935 9726047 1000 . . gene_id "CUFF.50589"; transcript_id "CUFF.50589.1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814"; +chr13 Cufflinks exon 9725935 9726047 1000 . . gene_id "CUFF.50589"; transcript_id "CUFF.50589.1"; exon_number "1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814"; +chr13 Cufflinks transcript 9739796 9739868 1000 . . gene_id "CUFF.50591"; transcript_id "CUFF.50591.1"; FPKM "11.5743204931"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.942882"; cov "0.739726"; +chr13 Cufflinks exon 9739796 9739868 1000 . . gene_id "CUFF.50591"; transcript_id "CUFF.50591.1"; exon_number "1"; FPKM "11.5743204931"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.942882"; cov "0.739726"; +chr13 Cufflinks transcript 9740164 9740202 1000 . . gene_id "CUFF.50593"; transcript_id "CUFF.50593.1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks exon 9740164 9740202 1000 . . gene_id "CUFF.50593"; transcript_id "CUFF.50593.1"; exon_number "1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks transcript 9740296 9740330 1000 . . gene_id "CUFF.50595"; transcript_id "CUFF.50595.1"; FPKM "48.2814511998"; frac "1.000000"; conf_lo "0.000000"; conf_hi "96.562902"; cov "3.085714"; +chr13 Cufflinks exon 9740296 9740330 1000 . . gene_id "CUFF.50595"; transcript_id "CUFF.50595.1"; exon_number "1"; FPKM "48.2814511998"; frac "1.000000"; conf_lo "0.000000"; conf_hi "96.562902"; cov "3.085714"; +chr13 Cufflinks transcript 9741046 9741127 1000 . . gene_id "CUFF.50597"; transcript_id "CUFF.50597.1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks exon 9741046 9741127 1000 . . gene_id "CUFF.50597"; transcript_id "CUFF.50597.1"; exon_number "1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks transcript 9741590 9741694 1000 . . gene_id "CUFF.50599"; transcript_id "CUFF.50599.1"; FPKM "12.0703627999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.008017"; cov "0.771429"; +chr13 Cufflinks exon 9741590 9741694 1000 . . gene_id "CUFF.50599"; transcript_id "CUFF.50599.1"; exon_number "1"; FPKM "12.0703627999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.008017"; cov "0.771429"; +chr13 Cufflinks transcript 9741399 9741517 1000 . . gene_id "CUFF.50601"; transcript_id "CUFF.50601.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "6.065348"; conf_hi "43.636146"; cov "1.588235"; +chr13 Cufflinks exon 9741399 9741517 1000 . . gene_id "CUFF.50601"; transcript_id "CUFF.50601.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "6.065348"; conf_hi "43.636146"; cov "1.588235"; +chr13 Cufflinks transcript 9868979 9869072 1000 . . gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702"; +chr13 Cufflinks exon 9868979 9869072 1000 . . gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; exon_number "1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702"; +chr13 Cufflinks transcript 9872853 9872934 1000 . . gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805"; +chr13 Cufflinks exon 9872853 9872934 1000 . . gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; exon_number "1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805"; +chr13 Cufflinks transcript 9874731 9874997 1000 . . gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989"; +chr13 Cufflinks exon 9874731 9874997 1000 . . gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; exon_number "1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989"; +chr13 Cufflinks transcript 9875128 9875201 1000 . . gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks exon 9875128 9875201 1000 . . gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks transcript 9875323 9875349 1000 . . gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9875323 9875349 1000 . . gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9875425 9875480 1000 . . gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks exon 9875425 9875480 1000 . . gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks transcript 9876121 9876172 1000 . . gene_id "CUFF.50615"; transcript_id "CUFF.50615.1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.227507"; cov "1.038462"; +chr13 Cufflinks exon 9876121 9876172 1000 . . gene_id "CUFF.50615"; transcript_id "CUFF.50615.1"; exon_number "1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.227507"; cov "1.038462"; +chr13 Cufflinks transcript 9969155 9969237 1000 . . gene_id "CUFF.50617"; transcript_id "CUFF.50617.1"; FPKM "8.6756763125"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.966038"; cov "0.554471"; +chr13 Cufflinks exon 9969155 9969237 1000 . . gene_id "CUFF.50617"; transcript_id "CUFF.50617.1"; exon_number "1"; FPKM "8.6756763125"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.966038"; cov "0.554471"; +chr13 Cufflinks transcript 9986765 9986791 1000 . . gene_id "CUFF.50619"; transcript_id "CUFF.50619.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 9986765 9986791 1000 . . gene_id "CUFF.50619"; transcript_id "CUFF.50619.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 9987242 9987567 1000 . . gene_id "CUFF.50621"; transcript_id "CUFF.50621.1"; FPKM "10.3671827730"; frac "1.000000"; conf_lo "3.036478"; conf_hi "17.697888"; cov "0.662577"; +chr13 Cufflinks exon 9987242 9987567 1000 . . gene_id "CUFF.50621"; transcript_id "CUFF.50621.1"; exon_number "1"; FPKM "10.3671827730"; frac "1.000000"; conf_lo "3.036478"; conf_hi "17.697888"; cov "0.662577"; +chr13 Cufflinks transcript 10010160 10010265 1000 . . gene_id "CUFF.50623"; transcript_id "CUFF.50623.1"; FPKM "11.9564914528"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.762659"; cov "0.764151"; +chr13 Cufflinks exon 10010160 10010265 1000 . . gene_id "CUFF.50623"; transcript_id "CUFF.50623.1"; exon_number "1"; FPKM "11.9564914528"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.762659"; cov "0.764151"; +chr13 Cufflinks transcript 10010497 10010523 1000 . . gene_id "CUFF.50625"; transcript_id "CUFF.50625.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 10010497 10010523 1000 . . gene_id "CUFF.50625"; transcript_id "CUFF.50625.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 10012021 10012167 1000 . . gene_id "CUFF.50627"; transcript_id "CUFF.50627.1"; FPKM "11.4955836190"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.991167"; cov "0.734694"; +chr13 Cufflinks exon 10012021 10012167 1000 . . gene_id "CUFF.50627"; transcript_id "CUFF.50627.1"; exon_number "1"; FPKM "11.4955836190"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.991167"; cov "0.734694"; +chr13 Cufflinks transcript 10019657 10019683 1000 . . gene_id "CUFF.50629"; 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gops_subtract_in2.gff Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,500 @@ +chr13 Cufflinks transcript 3633324 3651020 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3633324 3633421 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "1"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3641311 3641498 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "2"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3642721 3642871 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "3"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3644162 3644296 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "4"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3648565 3648756 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "5"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3649426 3651020 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "6"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks transcript 3802139 3803564 1000 - . gene_id "Calml3"; transcript_id "Calml3"; FPKM "4.8864843670"; frac "1.000000"; conf_lo "2.480113"; conf_hi "7.292856"; cov "0.312300"; +chr13 Cufflinks exon 3802139 3803564 1000 - . gene_id "Calml3"; transcript_id "Calml3"; exon_number "1"; FPKM "4.8864843670"; frac "1.000000"; conf_lo "2.480113"; conf_hi "7.292856"; cov "0.312300"; +chr13 Cufflinks transcript 3881809 3892824 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3881809 3883719 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "1"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3884049 3884235 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "2"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3885294 3885464 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "3"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3885784 3886041 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "4"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3886617 3886693 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "5"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3886817 3886913 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "6"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3887224 3887286 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "7"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3887601 3887768 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "8"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3888117 3888224 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "9"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3892539 3892824 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "10"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks transcript 4131873 4149877 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4131873 4132082 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "1"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4134449 4134531 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "2"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4135848 4136013 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "3"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4136380 4136489 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "4"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4141373 4141495 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "5"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4142464 4142541 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "6"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4143536 4143652 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "7"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4144452 4144619 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "8"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4149761 4149877 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "9"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks transcript 4232986 4247605 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4232986 4233100 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "1"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4235335 4235502 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "2"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4236282 4236398 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "3"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4237640 4237717 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "4"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4238214 4238336 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "5"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4241798 4241907 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "6"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4242173 4242338 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "7"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4246049 4246131 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "8"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4247324 4247605 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "9"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks transcript 4247981 4249023 1000 + . gene_id "Marcksl1-ps4"; transcript_id "Marcksl1-ps4"; FPKM "25.7982124751"; frac "1.000000"; conf_lo "19.333089"; conf_hi "32.263336"; cov "1.648789"; +chr13 Cufflinks exon 4247981 4249023 1000 + . gene_id "Marcksl1-ps4"; transcript_id "Marcksl1-ps4"; exon_number "1"; FPKM "25.7982124751"; frac "1.000000"; conf_lo "19.333089"; conf_hi "32.263336"; cov "1.648789"; +chr13 Cufflinks transcript 4591736 4608410 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4591736 4592544 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "1"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4592808 4592890 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "2"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4594317 4594400 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "3"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4594906 4594978 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "4"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4596731 4596828 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "5"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4598016 4598138 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "6"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4600464 4600541 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "7"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4601927 4602043 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "8"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4606637 4606804 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "9"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4608331 4608410 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "10"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks transcript 5860735 5869639 1000 + . gene_id "Klf6"; transcript_id "Klf6"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks exon 5860735 5861088 1000 + . gene_id "Klf6"; transcript_id "Klf6"; exon_number "1"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks exon 5864014 5864590 1000 + . gene_id "Klf6"; transcript_id "Klf6"; exon_number "2"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks exon 5865885 5866008 1000 + . gene_id "Klf6"; transcript_id "Klf6"; exon_number "3"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks exon 5866478 5869639 1000 + . gene_id "Klf6"; transcript_id "Klf6"; exon_number "4"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks transcript 3537321 3565507 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3537321 3537589 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "1"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3548109 3548216 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "2"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3550235 3550334 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "3"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3553658 3553792 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "4"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3555560 3555758 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "5"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3556172 3556303 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "6"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3559238 3559337 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "7"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3561112 3561283 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "8"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3563786 3563930 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "9"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3564105 3564159 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "10"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3564242 3565507 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "11"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks transcript 3565281 3610354 1000 - . gene_id "BC016423"; transcript_id "BC016423"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3565281 3565913 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "1"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3566164 3566278 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "2"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3566682 3566863 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "3"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3567998 3568103 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "4"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3568734 3568887 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "5"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3569558 3569683 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "6"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3572733 3576446 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "7"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3580998 3581439 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "8"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3583746 3584619 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "9"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3587544 3587780 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "10"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3589187 3589894 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "11"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3593377 3593439 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "12"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3593539 3593611 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "13"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3594743 3594846 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "14"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3596023 3596123 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "15"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3598898 3598997 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "16"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3599083 3599102 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "17"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3599185 3599308 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "18"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3599438 3599580 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "19"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3610036 3610354 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "20"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks transcript 8202155 8759554 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8202155 8202566 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "1"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8558350 8558436 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "2"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8568913 8569820 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "3"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8671651 8671765 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "4"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8696866 8697034 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "5"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8700826 8700977 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "6"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8712846 8713014 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "7"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8731036 8731217 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "8"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8751819 8751997 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "9"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8756472 8759554 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "10"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks transcript 8884852 8891641 1000 + . gene_id "Idi1"; transcript_id "Idi1"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8884852 8885242 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "1"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8885978 8886150 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "2"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8886731 8886823 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "3"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8887169 8887299 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "4"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8889564 8891641 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "5"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks transcript 8802214 8870288 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8802214 8805192 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "1"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8819109 8819223 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "2"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8819657 8819791 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "3"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8834543 8834684 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "4"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8836029 8836269 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "5"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8841976 8842052 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "6"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8844033 8844077 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "7"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8846861 8846932 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "8"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8848780 8848915 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "9"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8852916 8852980 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "10"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8853246 8853341 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "11"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8856078 8856174 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "12"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8860334 8860511 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "13"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8870116 8870288 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "14"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks transcript 8849725 8870288 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8849725 8852980 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "1"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8853246 8853341 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "2"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8856078 8856174 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "3"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8860334 8860511 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "4"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8870116 8870288 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "5"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks transcript 8971724 8995258 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8971724 8972520 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "1"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8973410 8973553 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "2"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8974191 8974256 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "3"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8976482 8976679 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "4"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8977774 8977874 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "5"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8978675 8978726 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "6"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8979148 8979225 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "7"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8984455 8984565 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "8"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8984884 8984973 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "9"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8986495 8986560 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "10"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8987002 8987193 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "11"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8988299 8988391 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "12"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8989944 8990044 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "13"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8990961 8991097 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "14"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8991178 8991281 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "15"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8991891 8992061 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "16"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8995195 8995258 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "17"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks transcript 6547403 6579395 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6547403 6547475 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "1"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6548826 6548928 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "2"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6551880 6551986 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "3"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6552428 6552579 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "4"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6554600 6554714 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "5"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6554798 6554894 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "6"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6555788 6555948 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "7"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6557008 6557134 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "8"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6557402 6557490 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "9"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6558601 6558729 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "10"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6559276 6559389 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "11"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6559848 6559944 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "12"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6561199 6561333 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "13"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6562622 6562760 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "14"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6564237 6564353 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "15"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6566596 6566728 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "16"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6567910 6568030 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "17"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6568145 6568221 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "18"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6568446 6568611 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "19"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6569848 6569948 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "20"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6572287 6572407 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "21"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6573606 6573677 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "22"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6574263 6574375 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "23"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6576636 6576761 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "24"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6577687 6577832 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "25"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6578664 6578766 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "26"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6578896 6579395 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "27"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks transcript 6579120 6647970 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6579120 6580838 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "1"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6581649 6581751 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "2"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6583847 6583946 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "3"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6585726 6585837 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "4"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6586298 6586359 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "5"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6587735 6587899 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "6"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6597105 6597257 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "7"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6597985 6598072 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "8"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6599842 6599912 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "9"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6601959 6602105 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "10"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6602325 6602394 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "11"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6602645 6602709 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "12"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6604202 6604327 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "13"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6604882 6604974 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "14"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6613950 6614045 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "15"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6618421 6618529 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "16"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6618766 6618810 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "17"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6620132 6620297 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "18"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6621153 6621342 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "19"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6624382 6624459 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "20"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6635171 6635244 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "21"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6647817 6647970 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "22"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks transcript 9093151 9172336 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9093151 9093426 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "1"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9121354 9121472 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "2"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9123149 9123208 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "3"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9136025 9136172 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "4"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9136401 9136547 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "5"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9143000 9143078 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "6"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9144628 9144764 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "7"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9146647 9146750 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "8"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9149072 9149182 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "9"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9150111 9150164 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "10"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9150261 9150470 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "11"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9157369 9157475 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "12"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9157797 9158048 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "13"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9163921 9163966 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "14"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9165563 9165727 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "15"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9167924 9168048 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "16"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9168144 9168252 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "17"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9169898 9172336 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "18"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks transcript 9275772 9668171 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9275772 9276312 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "1"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9492351 9492422 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "2"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9505825 9505935 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "3"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9532498 9532623 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "4"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9535902 9536111 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "5"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9549430 9549564 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "6"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9550992 9551111 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "7"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9552520 9552717 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "8"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9559917 9560008 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "9"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9562360 9562470 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "10"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9567077 9567200 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "11"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9567547 9567656 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "12"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9567837 9567939 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "13"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9570296 9570360 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "14"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9574380 9574473 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "15"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9574608 9574727 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "16"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9576050 9576164 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "17"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9583251 9583267 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "18"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9591990 9592004 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "19"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9600632 9600742 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "20"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9603735 9603871 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "21"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9605569 9605777 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "22"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9608190 9608304 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "23"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9609943 9610144 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "24"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9613593 9613702 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "25"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9614991 9615071 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "26"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9621125 9621248 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "27"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9621828 9621949 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "28"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9623003 9623114 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "29"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9623204 9623313 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "30"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9627219 9627349 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "31"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9633968 9634136 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "32"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9636341 9636511 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "33"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9646225 9646286 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "34"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9653849 9653906 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "35"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9655883 9655957 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "36"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9658491 9658665 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "37"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9661383 9661506 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "38"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9665024 9668171 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "39"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks transcript 9684082 9764454 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9684082 9686230 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "1"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9688309 9688494 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "2"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9688698 9688970 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "3"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9689692 9689760 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "4"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9690149 9690356 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "5"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9692676 9692794 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "6"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9693515 9693592 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "7"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9694375 9694430 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "8"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9694985 9695072 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "9"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9696890 9696982 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "10"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9697874 9697951 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "11"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9720019 9720178 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "12"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9734578 9734712 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "13"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9764301 9764454 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "14"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks transcript 9875859 10360049 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 9875859 9878263 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "1"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 10027699 10027745 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "2"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 10121473 10121535 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "3"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 10223891 10224003 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "4"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 10359510 10360049 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "5"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks transcript 11645370 12199212 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11645370 11646878 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "1"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11647698 11647749 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "2"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11648865 11648965 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "3"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11650314 11650378 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "4"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11652791 11652947 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "5"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11659115 11659249 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "6"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11660739 11660885 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "7"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11664513 11664573 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "8"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11670047 11670180 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "9"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11676403 11676445 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "10"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11677675 11677805 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "11"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11679483 11679704 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "12"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11680409 11680495 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "13"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11683492 11683639 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "14"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11685360 11685424 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "15"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11686949 11688246 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "16"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11689338 11689419 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "17"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11690773 11690877 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "18"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11694026 11694154 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "19"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11695952 11696040 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "20"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11697423 11697503 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "21"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11710874 11710947 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "22"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11711737 11711813 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "23"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11713582 11713661 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "24"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11715169 11715268 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "25"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11727792 11727845 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "26"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11730699 11730750 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "27"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11732541 11732644 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "28"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11736071 11736167 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "29"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11738760 11738872 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "30"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11739969 11740004 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "31"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11741997 11742131 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "32"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11746633 11746692 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "33"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11747885 11748055 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "34"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11749300 11749392 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "35"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11751217 11751304 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "36"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11752368 11752608 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "37"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11754333 11754653 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "38"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11758148 11758278 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "39"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11759346 11759427 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "40"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11761080 11761318 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "41"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11762196 11762256 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "42"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11768465 11768514 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "43"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11773233 11773354 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "44"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11776729 11776793 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "45"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11779210 11779325 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "46"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11780157 11780280 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "47"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11782559 11782634 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "48"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11784906 11784983 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "49"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11792515 11792652 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "50"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11793046 11793135 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "51"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11795764 11795842 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "52"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11797902 11798065 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "53"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11798849 11798989 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "54"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11800049 11800139 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "55"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11800289 11800509 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "56"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11802184 11802353 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "57"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11804402 11804522 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "58"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11806784 11806889 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "59"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11809208 11809394 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "60"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11810637 11810772 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "61"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11814018 11814121 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "62"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11814998 11815130 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "63"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11816530 11816644 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "64"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11819124 11819397 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "65"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11822610 11822753 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "66"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11823913 11824018 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "67"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11827738 11827938 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "68"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11829989 11830787 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "69"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11834121 11834347 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "70"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11837445 11837531 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "71"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11837864 11838026 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "72"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11839755 11839915 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "73"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11841703 11841817 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "74"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11842956 11843308 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "75"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11844463 11844671 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "76"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11851938 11852112 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "77"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11853494 11853702 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "78"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11862119 11862266 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "79"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11864687 11864846 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "80"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11871452 11871535 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "81"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11877305 11877408 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "82"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11882526 11882630 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "83"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11884936 11885152 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "84"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11886809 11887001 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "85"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11891949 11892190 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "86"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11893405 11893538 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "87"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11894074 11894192 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "88"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11903150 11903245 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "89"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11916541 11916676 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "90"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11919801 11919984 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "91"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11921824 11921945 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "92"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11926191 11926355 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "93"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11943325 11943481 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "94"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11945383 11945457 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "95"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11960384 11960480 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "96"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11961384 11961483 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "97"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11971742 11971854 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "98"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11975312 11975390 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "99"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11977731 11977805 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "100"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11983101 11983115 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "101"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11995485 11995505 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "102"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 12010578 12010682 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "103"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 12038150 12038269 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "104"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 12198666 12199212 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "105"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks transcript 12279086 12350267 1000 - . gene_id "Mtr"; transcript_id "Mtr"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12279086 12279358 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "1"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12280308 12280420 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "2"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12281614 12281806 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "3"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12282471 12282671 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "4"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12285881 12286077 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "5"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12287505 12287660 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "6"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12290180 12290255 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "7"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12291313 12291411 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "8"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12292464 12292545 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "9"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12297010 12297130 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "10"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12297557 12297624 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "11"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12304655 12304755 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "12"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12304938 12305045 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "13"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12307680 12307832 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "14"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12309077 12309166 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "15"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12313689 12313829 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "16"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12314422 12314538 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "17"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12317729 12317908 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "18"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12319951 12320136 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "19"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12323212 12323352 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "20"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12325169 12325281 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "21"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12327724 12327803 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "22"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12330248 12330315 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "23"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12331916 12331977 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "24"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12333832 12333932 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "25"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12336202 12336296 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "26"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12336822 12336884 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "27"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12339586 12339692 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "28"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12340160 12340252 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "29"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12342112 12342181 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "30"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12342869 12342958 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "31"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12346031 12346245 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "32"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12350129 12350267 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "33"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks transcript 12361694 12432999 1000 - . gene_id "Actn2"; transcript_id "Actn2"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12361694 12361919 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "1"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12363045 12363203 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "2"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12364966 12365031 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "3"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12367345 12367491 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "4"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12368630 12368809 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "5"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12369666 12369800 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "6"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12371061 12371243 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "7"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12372696 12372836 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "8"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12374782 12374890 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "9"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12380774 12380924 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "10"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12382941 12383088 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "11"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12383927 12384157 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "12"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12386577 12386669 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "13"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12388742 12388827 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "14"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12393202 12393283 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "15"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12396581 12396659 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "16"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12398541 12398628 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "17"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12401167 12401253 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "18"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12401862 12401981 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "19"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12403114 12403228 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "20"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12432642 12432999 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "21"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks transcript 12487642 12531160 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12487642 12487737 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "1"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12488007 12488180 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "2"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12488689 12488905 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "3"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12491170 12491311 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "4"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12493317 12493418 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "5"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12493717 12493857 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "6"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12494981 12495192 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "7"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12495412 12495545 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "8"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12497155 12497257 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "9"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12498290 12498400 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "10"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12498792 12498909 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "11"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12499784 12499891 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "12"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12500921 12501016 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "13"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12501476 12501564 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "14"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12502663 12502874 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "15"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12503487 12503608 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "16"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12504312 12504503 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "17"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12505492 12505675 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "18"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12505779 12505915 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "19"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12506640 12506832 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "20"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12507684 12507853 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "21"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12508218 12508376 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "22"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12509727 12509969 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "23"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12510365 12510496 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "24"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12513309 12513412 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "25"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12513545 12513688 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "26"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12514308 12514426 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "27"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12514508 12514629 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "28"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12515901 12516029 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "29"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12516887 12517117 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "30"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12518421 12518547 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "31"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12519029 12519189 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "32"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12522034 12522080 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "33"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12522408 12522531 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "34"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12523178 12523318 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "35"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12523947 12524239 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "36"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12524896 12525046 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "37"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12525879 12526037 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "38"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12526184 12526318 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "39"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12526454 12526558 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "40"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12526641 12526809 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "41"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12527314 12527468 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "42"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12527937 12528095 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "43"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12530101 12530209 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "44"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12530856 12531160 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "45"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks transcript 12531686 12553757 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12531686 12533261 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "1"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12539414 12539579 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "2"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12540686 12540774 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "3"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12543668 12543694 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "4"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12544989 12545045 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "5"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12545552 12545671 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "6"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12547002 12547212 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "7"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12548611 12548699 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "8"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12551441 12551583 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "9"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12553694 12553757 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "10"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks transcript 12569175 12612715 1000 - . gene_id "Edaradd"; transcript_id "Edaradd"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406"; +chr13 Cufflinks exon 12569175 12570841 1000 - . gene_id "Edaradd"; transcript_id "Edaradd"; exon_number "1"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406"; +chr13 Cufflinks exon 12575867 12575912 1000 - . gene_id "Edaradd"; transcript_id "Edaradd"; exon_number "2"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406";
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gops_subtract_out1.gff Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,64 @@ +chr13 Cufflinks transcript 3405463 3405542 1000 + . gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914"; +chr13 Cufflinks exon 3405463 3405542 1000 + . gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; exon_number "1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914"; +chr13 Cufflinks transcript 3473337 3473372 1000 + . gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000"; +chr13 Cufflinks exon 3473337 3473372 1000 + . gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; exon_number "1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000"; +chr13 Cufflinks transcript 3490319 3490350 1000 + . gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250"; +chr13 Cufflinks exon 3490319 3490350 1000 + . gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; exon_number "1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250"; +chr13 Cufflinks transcript 3612524 3612550 1000 + . gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813"; +chr13 Cufflinks exon 3612524 3612550 1000 + . gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; exon_number "1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813"; +chr13 Cufflinks transcript 3652248 3652287 1000 + . gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks exon 3652248 3652287 1000 + . gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks transcript 3652708 3652757 1000 + . gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000"; +chr13 Cufflinks exon 3652708 3652757 1000 + . gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000"; +chr13 Cufflinks transcript 3652858 3652892 1000 + . gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857"; +chr13 Cufflinks exon 3652858 3652892 1000 + . gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; exon_number "1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857"; +chr13 Cufflinks transcript 3881504 3881530 1000 + . gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3881504 3881530 1000 + . gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3940646 3940672 1000 + . gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3940646 3940672 1000 + . gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4253585 4253611 1000 + . gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 4253585 4253611 1000 + . gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4356816 4356842 1000 + . gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626"; +chr13 Cufflinks exon 4356816 4356842 1000 + . gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; exon_number "1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626"; +chr13 Cufflinks transcript 6205097 6205155 1000 + . gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254"; +chr13 Cufflinks exon 6205097 6205155 1000 + . gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; exon_number "1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254"; +chr13 Cufflinks transcript 6227260 6227293 1000 + . gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234"; +chr13 Cufflinks exon 6227260 6227293 1000 + . gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; exon_number "1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234"; +chr13 Cufflinks transcript 6795860 6795886 1000 + . gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 6795860 6795886 1000 + . gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 7155940 7155966 1000 + . gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 7155940 7155966 1000 + . gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 7676033 7676123 1000 + . gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks exon 7676033 7676123 1000 + . gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks transcript 8766868 8767005 1000 + . gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609"; +chr13 Cufflinks exon 8766868 8767005 1000 + . gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609"; +chr13 Cufflinks transcript 8767194 8767393 1000 + . gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000"; +chr13 Cufflinks exon 8767194 8767393 1000 + . gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000"; +chr13 Cufflinks transcript 8767461 8767531 1000 + . gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845"; +chr13 Cufflinks exon 8767461 8767531 1000 + . gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845"; +chr13 Cufflinks transcript 8767695 8767885 1000 + . gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890"; +chr13 Cufflinks exon 8767695 8767885 1000 + . gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; exon_number "1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890"; +chr13 Cufflinks transcript 8767947 8767992 1000 + . gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870"; +chr13 Cufflinks exon 8767947 8767992 1000 + . gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; exon_number "1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870"; +chr13 Cufflinks transcript 8784118 8784193 1000 + . gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789"; +chr13 Cufflinks exon 8784118 8784193 1000 + . gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; exon_number "1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789"; +chr13 Cufflinks transcript 8965678 8965704 1000 + . gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8965678 8965704 1000 + . gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9272120 9272153 1000 + . gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350"; +chr13 Cufflinks exon 9272120 9272153 1000 + . gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; exon_number "1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350"; +chr13 Cufflinks transcript 9172647 9173652 1000 + . gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553"; +chr13 Cufflinks exon 9172647 9173652 1000 + . gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; exon_number "1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553"; +chr13 Cufflinks transcript 9678669 9678695 1000 + . gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9678669 9678695 1000 + . gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9868979 9869072 1000 + . gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702"; +chr13 Cufflinks exon 9868979 9869072 1000 + . gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; exon_number "1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702"; +chr13 Cufflinks transcript 9872853 9872934 1000 + . gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805"; +chr13 Cufflinks exon 9872853 9872934 1000 + . gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; exon_number "1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805"; +chr13 Cufflinks transcript 9874731 9874997 1000 + . gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989"; +chr13 Cufflinks exon 9874731 9874997 1000 + . gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; exon_number "1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989"; +chr13 Cufflinks transcript 9875128 9875201 1000 + . gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks exon 9875128 9875201 1000 + . gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks transcript 9875323 9875349 1000 + . gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9875323 9875349 1000 + . gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9875425 9875480 1000 + . gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks exon 9875425 9875480 1000 + . gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286";
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,9 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bx-python" version="0.7.1"> + <repository changeset_revision="cdb5991f9790" name="package_bx_python_0_7" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="galaxy-ops" version="1.0.0"> + <repository changeset_revision="3287c55c02b8" name="package_galaxy_ops_1_0_0" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/utils/gff_util.py Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,430 @@ +""" +Provides utilities for working with GFF files. +""" + +import copy +from bx.intervals.io import * +from bx.tabular.io import Header, Comment +from utils.odict import odict + +class GFFInterval( GenomicInterval ): + """ + A GFF interval, including attributes. If file is strictly a GFF file, + only attribute is 'group.' + """ + def __init__( self, reader, fields, chrom_col=0, feature_col=2, start_col=3, end_col=4, \ + strand_col=6, score_col=5, default_strand='.', fix_strand=False ): + # HACK: GFF format allows '.' for strand but GenomicInterval does not. To get around this, + # temporarily set strand and then unset after initing GenomicInterval. + unknown_strand = False + if not fix_strand and fields[ strand_col ] == '.': + unknown_strand = True + fields[ strand_col ] = '+' + GenomicInterval.__init__( self, reader, fields, chrom_col, start_col, end_col, strand_col, \ + default_strand, fix_strand=fix_strand ) + if unknown_strand: + self.strand = '.' + self.fields[ strand_col ] = '.' + + # Handle feature, score column. + self.feature_col = feature_col + if self.feature_col >= self.nfields: + raise MissingFieldError( "No field for feature_col (%d)" % feature_col ) + self.feature = self.fields[ self.feature_col ] + self.score_col = score_col + if self.score_col >= self.nfields: + raise MissingFieldError( "No field for score_col (%d)" % score_col ) + self.score = self.fields[ self.score_col ] + + # GFF attributes. + self.attributes = parse_gff_attributes( fields[8] ) + + def copy( self ): + return GFFInterval(self.reader, list( self.fields ), self.chrom_col, self.feature_col, self.start_col, + self.end_col, self.strand_col, self.score_col, self.strand) + +class GFFFeature( GFFInterval ): + """ + A GFF feature, which can include multiple intervals. + """ + def __init__( self, reader, chrom_col=0, feature_col=2, start_col=3, end_col=4, \ + strand_col=6, score_col=5, default_strand='.', fix_strand=False, intervals=[], \ + raw_size=0 ): + # Use copy so that first interval and feature do not share fields. + GFFInterval.__init__( self, reader, copy.deepcopy( intervals[0].fields ), chrom_col, feature_col, \ + start_col, end_col, strand_col, score_col, default_strand, \ + fix_strand=fix_strand ) + self.intervals = intervals + self.raw_size = raw_size + # Use intervals to set feature attributes. + for interval in self.intervals: + # Error checking. NOTE: intervals need not share the same strand. + if interval.chrom != self.chrom: + raise ValueError( "interval chrom does not match self chrom: %s != %s" % \ + ( interval.chrom, self.chrom ) ) + # Set start, end of interval. + if interval.start < self.start: + self.start = interval.start + if interval.end > self.end: + self.end = interval.end + + def name( self ): + """ Returns feature's name. """ + name = None + # Preference for name: GTF, GFF3, GFF. + for attr_name in [ + # GTF: + 'gene_id', 'transcript_id', + # GFF3: + 'ID', 'id', + # GFF (TODO): + 'group' ]: + name = self.attributes.get( attr_name, None ) + if name is not None: + break + return name + + def copy( self ): + intervals_copy = [] + for interval in self.intervals: + intervals_copy.append( interval.copy() ) + return GFFFeature(self.reader, self.chrom_col, self.feature_col, self.start_col, self.end_col, self.strand_col, + self.score_col, self.strand, intervals=intervals_copy ) + + def lines( self ): + lines = [] + for interval in self.intervals: + lines.append( '\t'.join( interval.fields ) ) + return lines + + +class GFFIntervalToBEDReaderWrapper( NiceReaderWrapper ): + """ + Reader wrapper that reads GFF intervals/lines and automatically converts + them to BED format. + """ + + def parse_row( self, line ): + # HACK: this should return a GFF interval, but bx-python operations + # require GenomicInterval objects and subclasses will not work. + interval = GenomicInterval( self, line.split( "\t" ), self.chrom_col, self.start_col, \ + self.end_col, self.strand_col, self.default_strand, \ + fix_strand=self.fix_strand ) + interval = convert_gff_coords_to_bed( interval ) + return interval + +class GFFReaderWrapper( NiceReaderWrapper ): + """ + Reader wrapper for GFF files. + + Wrapper has two major functions: + + 1. group entries for GFF file (via group column), GFF3 (via id attribute), + or GTF (via gene_id/transcript id); + 2. convert coordinates from GFF format--starting and ending coordinates + are 1-based, closed--to the 'traditional'/BED interval format--0 based, + half-open. This is useful when using GFF files as inputs to tools that + expect traditional interval format. + """ + + def __init__( self, reader, chrom_col=0, feature_col=2, start_col=3, \ + end_col=4, strand_col=6, score_col=5, fix_strand=False, convert_to_bed_coord=False, **kwargs ): + NiceReaderWrapper.__init__( self, reader, chrom_col=chrom_col, start_col=start_col, end_col=end_col, \ + strand_col=strand_col, fix_strand=fix_strand, **kwargs ) + self.feature_col = feature_col + self.score_col = score_col + self.convert_to_bed_coord = convert_to_bed_coord + self.last_line = None + self.cur_offset = 0 + self.seed_interval = None + self.seed_interval_line_len = 0 + + def parse_row( self, line ): + interval = GFFInterval( self, line.split( "\t" ), self.chrom_col, self.feature_col, \ + self.start_col, self.end_col, self.strand_col, self.score_col, \ + self.default_strand, fix_strand=self.fix_strand ) + return interval + + def next( self ): + """ Returns next GFFFeature. """ + + # + # Helper function. + # + + def handle_parse_error( parse_error ): + """ Actions to take when ParseError found. """ + if self.outstream: + if self.print_delegate and hasattr(self.print_delegate,"__call__"): + self.print_delegate( self.outstream, e, self ) + self.skipped += 1 + # no reason to stuff an entire bad file into memmory + if self.skipped < 10: + self.skipped_lines.append( ( self.linenum, self.current_line, str( e ) ) ) + + # For debugging, uncomment this to propogate parsing exceptions up. + # I.e. the underlying reason for an unexpected StopIteration exception + # can be found by uncommenting this. + # raise e + + # + # Get next GFFFeature + # + raw_size = self.seed_interval_line_len + + # If there is no seed interval, set one. Also, if there are no more + # intervals to read, this is where iterator dies. + if not self.seed_interval: + while not self.seed_interval: + try: + self.seed_interval = GenomicIntervalReader.next( self ) + except ParseError, e: + handle_parse_error( e ) + # TODO: When no longer supporting python 2.4 use finally: + #finally: + raw_size += len( self.current_line ) + + # If header or comment, clear seed interval and return it with its size. + if isinstance( self.seed_interval, ( Header, Comment ) ): + return_val = self.seed_interval + return_val.raw_size = len( self.current_line ) + self.seed_interval = None + self.seed_interval_line_len = 0 + return return_val + + # Initialize feature identifier from seed. + feature_group = self.seed_interval.attributes.get( 'group', None ) # For GFF + # For GFF3 + feature_id = self.seed_interval.attributes.get( 'ID', None ) + feature_parent_id = self.seed_interval.attributes.get( 'Parent', None ) + # For GTF. + feature_gene_id = self.seed_interval.attributes.get( 'gene_id', None ) + feature_transcript_id = self.seed_interval.attributes.get( 'transcript_id', None ) + + # Read all intervals associated with seed. + feature_intervals = [] + feature_intervals.append( self.seed_interval ) + while True: + try: + interval = GenomicIntervalReader.next( self ) + raw_size += len( self.current_line ) + except StopIteration, e: + # No more intervals to read, but last feature needs to be + # returned. + interval = None + raw_size += len( self.current_line ) + break + except ParseError, e: + handle_parse_error( e ) + raw_size += len( self.current_line ) + continue + # TODO: When no longer supporting python 2.4 use finally: + #finally: + #raw_size += len( self.current_line ) + + # Ignore comments. + if isinstance( interval, Comment ): + continue + + # Determine if interval is part of feature. + part_of = False + group = interval.attributes.get( 'group', None ) + # GFF test: + if group and feature_group == group: + part_of = True + # GFF3 test: + parent_id = interval.attributes.get( 'Parent', None ) + cur_id = interval.attributes.get( 'ID', None ) + if ( cur_id and cur_id == feature_id ) or ( parent_id and parent_id == feature_id ): + part_of = True + # GTF test: + transcript_id = interval.attributes.get( 'transcript_id', None ) + if transcript_id and transcript_id == feature_transcript_id: + part_of = True + + # If interval is not part of feature, clean up and break. + if not part_of: + # Adjust raw size because current line is not part of feature. + raw_size -= len( self.current_line ) + break + + # Interval associated with feature. + feature_intervals.append( interval ) + + # Last interval read is the seed for the next interval. + self.seed_interval = interval + self.seed_interval_line_len = len( self.current_line ) + + # Return feature. + feature = GFFFeature( self, self.chrom_col, self.feature_col, self.start_col, \ + self.end_col, self.strand_col, self.score_col, \ + self.default_strand, fix_strand=self.fix_strand, \ + intervals=feature_intervals, raw_size=raw_size ) + + # Convert to BED coords? + if self.convert_to_bed_coord: + convert_gff_coords_to_bed( feature ) + + return feature + +def convert_bed_coords_to_gff( interval ): + """ + Converts an interval object's coordinates from BED format to GFF format. + Accepted object types include GenomicInterval and list (where the first + element in the list is the interval's start, and the second element is + the interval's end). + """ + if isinstance( interval, GenomicInterval ): + interval.start += 1 + if isinstance( interval, GFFFeature ): + for subinterval in interval.intervals: + convert_bed_coords_to_gff( subinterval ) + elif type ( interval ) is list: + interval[ 0 ] += 1 + return interval + +def convert_gff_coords_to_bed( interval ): + """ + Converts an interval object's coordinates from GFF format to BED format. + Accepted object types include GFFFeature, GenomicInterval, and list (where + the first element in the list is the interval's start, and the second + element is the interval's end). + """ + if isinstance( interval, GenomicInterval ): + interval.start -= 1 + if isinstance( interval, GFFFeature ): + for subinterval in interval.intervals: + convert_gff_coords_to_bed( subinterval ) + elif type ( interval ) is list: + interval[ 0 ] -= 1 + return interval + +def parse_gff_attributes( attr_str ): + """ + Parses a GFF/GTF attribute string and returns a dictionary of name-value + pairs. The general format for a GFF3 attributes string is + + name1=value1;name2=value2 + + The general format for a GTF attribute string is + + name1 "value1" ; name2 "value2" + + The general format for a GFF attribute string is a single string that + denotes the interval's group; in this case, method returns a dictionary + with a single key-value pair, and key name is 'group' + """ + attributes_list = attr_str.split(";") + attributes = {} + for name_value_pair in attributes_list: + # Try splitting by '=' (GFF3) first because spaces are allowed in GFF3 + # attribute; next, try double quotes for GTF. + pair = name_value_pair.strip().split("=") + if len( pair ) == 1: + pair = name_value_pair.strip().split("\"") + if len( pair ) == 1: + # Could not split for some reason -- raise exception? + continue + if pair == '': + continue + name = pair[0].strip() + if name == '': + continue + # Need to strip double quote from values + value = pair[1].strip(" \"") + attributes[ name ] = value + + if len( attributes ) == 0: + # Could not split attributes string, so entire string must be + # 'group' attribute. This is the case for strictly GFF files. + attributes['group'] = attr_str + return attributes + +def gff_attributes_to_str( attrs, gff_format ): + """ + Convert GFF attributes to string. Supported formats are GFF3, GTF. + """ + if gff_format == 'GTF': + format_string = '%s "%s"' + # Convert group (GFF) and ID, parent (GFF3) attributes to transcript_id, gene_id + id_attr = None + if 'group' in attrs: + id_attr = 'group' + elif 'ID' in attrs: + id_attr = 'ID' + elif 'Parent' in attrs: + id_attr = 'Parent' + if id_attr: + attrs['transcript_id'] = attrs['gene_id'] = attrs[id_attr] + elif gff_format == 'GFF3': + format_string = '%s=%s' + attrs_strs = [] + for name, value in attrs.items(): + attrs_strs.append( format_string % ( name, value ) ) + return " ; ".join( attrs_strs ) + +def read_unordered_gtf( iterator, strict=False ): + """ + Returns GTF features found in an iterator. GTF lines need not be ordered + or clustered for reader to work. Reader returns GFFFeature objects sorted + by transcript_id, chrom, and start position. + """ + + # -- Get function that generates line/feature key. -- + + get_transcript_id = lambda fields: parse_gff_attributes( fields[8] )[ 'transcript_id' ] + if strict: + # Strict GTF parsing uses transcript_id only to group lines into feature. + key_fn = get_transcript_id + else: + # Use lenient parsing where chromosome + transcript_id is the key. This allows + # transcripts with same ID on different chromosomes; this occurs in some popular + # datasources, such as RefGenes in UCSC. + key_fn = lambda fields: fields[0] + '_' + get_transcript_id( fields ) + + + # Aggregate intervals by transcript_id and collect comments. + feature_intervals = odict() + comments = [] + for count, line in enumerate( iterator ): + if line.startswith( '#' ): + comments.append( Comment( line ) ) + continue + + line_key = key_fn( line.split('\t') ) + if line_key in feature_intervals: + feature = feature_intervals[ line_key ] + else: + feature = [] + feature_intervals[ line_key ] = feature + feature.append( GFFInterval( None, line.split( '\t' ) ) ) + + # Create features. + chroms_features = {} + for count, intervals in enumerate( feature_intervals.values() ): + # Sort intervals by start position. + intervals.sort( lambda a,b: cmp( a.start, b.start ) ) + feature = GFFFeature( None, intervals=intervals ) + if feature.chrom not in chroms_features: + chroms_features[ feature.chrom ] = [] + chroms_features[ feature.chrom ].append( feature ) + + # Sort features by chrom, start position. + chroms_features_sorted = [] + for chrom_features in chroms_features.values(): + chroms_features_sorted.append( chrom_features ) + chroms_features_sorted.sort( lambda a,b: cmp( a[0].chrom, b[0].chrom ) ) + for features in chroms_features_sorted: + features.sort( lambda a,b: cmp( a.start, b.start ) ) + + # Yield comments first, then features. + # FIXME: comments can appear anywhere in file, not just the beginning. + # Ideally, then comments would be associated with features and output + # just before feature/line. + for comment in comments: + yield comment + + for chrom_features in chroms_features_sorted: + for feature in chrom_features: + yield feature +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/utils/odict.py Tue Apr 01 09:13:11 2014 -0400 @@ -0,0 +1,85 @@ +""" +Ordered dictionary implementation. +""" + +from UserDict import UserDict + +class odict(UserDict): + """ + http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/107747 + + This dictionary class extends UserDict to record the order in which items are + added. Calling keys(), values(), items(), etc. will return results in this + order. + """ + def __init__( self, dict = None ): + self._keys = [] + UserDict.__init__( self, dict ) + + def __delitem__( self, key ): + UserDict.__delitem__( self, key ) + self._keys.remove( key ) + + def __setitem__( self, key, item ): + UserDict.__setitem__( self, key, item ) + if key not in self._keys: + self._keys.append( key ) + + def clear( self ): + UserDict.clear( self ) + self._keys = [] + + def copy(self): + new = odict() + new.update( self ) + return new + + def items( self ): + return zip( self._keys, self.values() ) + + def keys( self ): + return self._keys[:] + + def popitem( self ): + try: + key = self._keys[-1] + except IndexError: + raise KeyError( 'dictionary is empty' ) + val = self[ key ] + del self[ key ] + return ( key, val ) + + def setdefault( self, key, failobj=None ): + if key not in self._keys: + self._keys.append( key ) + return UserDict.setdefault( self, key, failobj ) + + def update( self, dict ): + for ( key, val ) in dict.items(): + self.__setitem__( key, val ) + + def values( self ): + return map( self.get, self._keys ) + + def iterkeys( self ): + return iter( self._keys ) + + def itervalues( self ): + for key in self._keys: + yield self.get( key ) + + def iteritems( self ): + for key in self._keys: + yield key, self.get( key ) + + def __iter__( self ): + for key in self._keys: + yield key + + def reverse( self ): + self._keys.reverse() + + def insert( self, index, key, item ): + if key not in self._keys: + self._keys.insert( index, key ) + UserDict.__setitem__( self, key, item )