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annotate test-data/samtools_stats_out2.tab @ 0:cd6eb75c9819 draft

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Uploaded initial tool definition.
author devteam
date Mon, 20 Oct 2014 14:56:49 -0400
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children cc56fc603e53
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cd6eb75c9819 Uploaded initial tool definition.
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1 # This file was produced by samtools stats (1.1+htslib-1.1) and can be plotted using plot-bamstats
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2 # The command line was: stats --coverage 1,1000,1 --GC-depth 2000.0 --insert-size 8000 --most-inserts 0.99 --trim-quality 0 /tmp/tmpFDCqQD/tmprMv9KZ/database/files/000/dataset_893.dat
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3 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities
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4 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
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5 CHK 76594422 342222f2 06e86208
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6 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
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7 SN raw total sequences: 1000
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8 SN filtered sequences: 0
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9 SN sequences: 1000
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10 SN is sorted: 1
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11 SN 1st fragments: 500
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12 SN last fragments: 500
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13 SN reads mapped: 972
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14 SN reads mapped and paired: 954 # paired-end technology bit set + both mates mapped
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15 SN reads unmapped: 28
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16 SN reads properly paired: 0 # proper-pair bit set
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17 SN reads paired: 1000 # paired-end technology bit set
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18 SN reads duplicated: 0 # PCR or optical duplicate bit set
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19 SN reads MQ0: 0 # mapped and MQ=0
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20 SN reads QC failed: 0
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21 SN non-primary alignments: 0
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22 SN total length: 70000 # ignores clipping
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23 SN bases mapped: 68040 # ignores clipping
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24 SN bases mapped (cigar): 68040 # more accurate
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25 SN bases trimmed: 0
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26 SN bases duplicated: 0
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27 SN mismatches: 1237 # from NM fields
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28 SN error rate: 1.818048e-02 # mismatches / bases mapped (cigar)
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29 SN average length: 70
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30 SN maximum length: 70
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31 SN average quality: 17.0
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32 SN insert size average: 495.1
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33 SN insert size standard deviation: 48.9
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34 SN inward oriented pairs: 477
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35 SN outward oriented pairs: 0
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36 SN pairs with other orientation: 0
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37 SN pairs on different chromosomes: 0
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38 # First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part.
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39 # Columns correspond to qualities and rows to cycles. First column is the cycle number.
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40 FFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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111 # Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part.
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112 # Columns correspond to qualities and rows to cycles. First column is the cycle number.
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113 LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
123 LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
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cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
125 LFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
126 LFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
127 LFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
128 LFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
129 LFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
130 LFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
131 LFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
132 LFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
133 LFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
134 LFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
135 LFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
136 LFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
137 LFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
138 LFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
139 LFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
140 LFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
141 LFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
142 LFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
143 LFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
144 LFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
145 LFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
146 LFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
147 LFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
148 LFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
149 LFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
150 LFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
151 LFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
152 LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
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153 LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
154 LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
155 LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
156 LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
157 LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
158 LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
159 LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
160 LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
161 LFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
162 LFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
163 LFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
164 LFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
165 LFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
166 LFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
167 LFQ 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
168 LFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
169 LFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
170 LFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
171 LFQ 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
172 LFQ 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
173 LFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
174 LFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
175 LFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
176 LFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
177 LFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
178 LFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
179 LFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
180 LFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
181 LFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
182 LFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
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183 LFQ 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
184 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
185 GCF 14.82 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
186 GCF 31.16 2
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
187 GCF 33.42 6
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
188 GCF 34.92 4
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
189 GCF 36.18 6
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
190 GCF 37.44 12
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
191 GCF 38.94 28
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
192 GCF 40.45 34
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
193 GCF 41.96 37
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
194 GCF 43.47 46
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
195 GCF 44.72 55
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
196 GCF 45.98 57
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
197 GCF 47.49 68
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
198 GCF 48.99 60
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
199 GCF 50.50 27
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
200 GCF 52.01 18
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
201 GCF 53.52 15
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
202 GCF 54.77 9
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
203 GCF 56.03 4
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
204 GCF 57.54 3
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
205 GCF 59.05 2
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
206 GCF 60.55 4
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
207 GCF 62.06 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
208 GCF 63.32 1
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
209 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
210 GCL 14.07 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
211 GCL 28.89 1
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
212 GCL 30.40 3
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
213 GCL 31.91 1
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
214 GCL 33.42 2
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
215 GCL 34.92 4
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
216 GCL 36.18 8
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
217 GCL 37.44 16
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
218 GCL 38.94 31
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
219 GCL 40.45 40
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
220 GCL 41.96 39
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
221 GCL 43.47 55
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
222 GCL 44.72 46
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
223 GCL 45.98 61
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
224 GCL 47.49 53
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
225 GCL 48.99 50
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
226 GCL 50.50 32
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
227 GCL 52.01 23
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
228 GCL 53.52 11
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
229 GCL 54.77 9
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
230 GCL 56.03 8
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
231 GCL 57.54 3
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
232 GCL 61.06 1
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
233 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle, and A,C,G,T counts [%]
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
234 GCC 1 21.50 23.30 24.50 30.70
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
235 GCC 2 21.10 22.20 22.50 34.20
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
236 GCC 3 22.20 20.50 26.80 30.50
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
237 GCC 4 24.40 21.50 21.50 32.60
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
238 GCC 5 23.50 21.10 25.60 29.80
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
239 GCC 6 26.30 21.80 20.40 31.50
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
240 GCC 7 25.40 20.50 22.00 32.10
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
241 GCC 8 23.90 19.20 27.00 29.90
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
242 GCC 9 23.70 22.70 22.00 31.60
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
243 GCC 10 22.50 22.00 24.10 31.40
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
244 GCC 11 22.40 21.50 22.10 34.00
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
245 GCC 12 25.20 18.00 24.50 32.30
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
246 GCC 13 23.70 20.80 21.70 33.80
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
247 GCC 14 24.60 23.00 22.40 30.00
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
248 GCC 15 25.50 22.30 22.50 29.70
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
249 GCC 16 24.10 21.40 23.60 30.90
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
250 GCC 17 24.30 21.00 23.90 30.80
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
251 GCC 18 24.40 22.10 22.70 30.80
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
252 GCC 19 25.60 20.50 24.70 29.20
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
253 GCC 20 25.80 19.60 22.00 32.60
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
254 GCC 21 23.20 22.90 23.00 30.90
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
255 GCC 22 23.90 22.70 22.60 30.80
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
256 GCC 23 25.80 21.30 22.40 30.50
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
257 GCC 24 23.50 22.00 22.70 31.80
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
258 GCC 25 22.40 21.80 23.10 32.70
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
259 GCC 26 22.90 19.90 24.30 32.90
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
260 GCC 27 23.10 22.10 24.20 30.60
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
261 GCC 28 23.50 22.10 22.90 31.50
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
262 GCC 29 24.40 21.80 21.30 32.50
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
263 GCC 30 21.90 22.50 22.60 33.00
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
264 GCC 31 23.10 20.90 24.20 31.80
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
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diff changeset
899 IS 594 2 2 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
900 IS 595 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
901 IS 596 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
902 IS 597 1 1 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
903 IS 598 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
904 IS 599 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
905 IS 600 1 1 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
906 IS 601 1 1 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
907 IS 602 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
908 IS 603 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
909 IS 604 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
910 IS 605 1 1 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
911 IS 606 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
912 IS 607 1 1 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
913 IS 608 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
914 IS 609 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
915 IS 610 0 0 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
916 IS 611 1 1 0 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
917 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
918 RL 70 1000
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
919 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
920 ID 1 0 1
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
921 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
922 IC 8 0 0 1 0
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
923 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
924 COV [1-1] 1 42
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
925 COV [2-2] 2 59
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
926 COV [3-3] 3 73
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
927 COV [4-4] 4 98
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
928 COV [5-5] 5 128
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
929 COV [6-6] 6 142
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
930 COV [7-7] 7 226
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
931 COV [8-8] 8 241
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
932 COV [9-9] 9 281
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
933 COV [10-10] 10 400
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
934 COV [11-11] 11 450
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
935 COV [12-12] 12 444
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
936 COV [13-13] 13 433
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
937 COV [14-14] 14 423
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
938 COV [15-15] 15 392
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
939 COV [16-16] 16 434
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
940 COV [17-17] 17 294
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
941 COV [18-18] 18 229
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
942 COV [19-19] 19 143
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
943 COV [20-20] 20 143
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
944 COV [21-21] 21 149
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
945 COV [22-22] 22 90
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
946 COV [23-23] 23 41
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
947 COV [24-24] 24 14
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
948 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
949 GCD 0.0 50.000 0.000 0.000 0.000 0.000 0.000
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
950 GCD 44.0 75.000 14.875 14.875 14.875 14.875 14.875
cd6eb75c9819 Uploaded initial tool definition.
devteam
parents:
diff changeset
951 GCD 46.0 100.000 11.900 11.900 11.900 11.900 11.900