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13 <title>galaxytools/tool_dependencies.xml at master ยท bgruening/galaxytools</title>
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63 <body class="logged_in env-production macintosh vis-public page-blob">
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81 <form accept-charset="UTF-8" action="/bgruening/galaxytools/search" class="js-site-search-form" data-global-search-url="/search" data-repo-search-url="/bgruening/galaxytools/search" method="get"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /></div>
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115 <span class="css-truncate-target">martenson</span>
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127
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128 <ul class="dropdown-menu">
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129 <li>
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130 <a href="/new"><span class="octicon octicon-repo"></span> New repository</a>
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132 <li>
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133 <a href="/organizations/new"><span class="octicon octicon-organization"></span> New organization</a>
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139 <span title="bgruening/galaxytools">This repository</span>
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153 </a>
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154 </li>
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155
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156 <li class="header-nav-item">
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158 <span class="octicon octicon-gear"></span>
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159 </a>
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160 </li>
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161
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162 <li class="header-nav-item">
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163 <form accept-charset="UTF-8" action="/logout" class="logout-form" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="4xBMmfxsY7XX1oI5xQI2i2gzFv/xf6x15IIj2lub87XVSWTSGWpDY5PQa1qI2PlxrT4GSQElVdmRNUD9XbU2Yg==" /></div>
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164 <button class="header-nav-link sign-out-button tooltipped tooltipped-s" aria-label="Sign out" data-ga-click="Header, sign out, icon:logout">
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165 <span class="octicon octicon-sign-out"></span>
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166 </button>
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167 </form> </li>
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168
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169 </ul>
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170
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171
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172
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173 </div>
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174 </div>
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175
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176
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177
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178
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179
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180
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181 <div id="start-of-content" class="accessibility-aid"></div>
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182 <div class="site" itemscope itemtype="http://schema.org/WebPage">
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183 <div id="js-flash-container">
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184
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185 </div>
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186 <div class="pagehead repohead instapaper_ignore readability-menu">
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187 <div class="container">
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188
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189 <ul class="pagehead-actions">
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190
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191 <li class="subscription">
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192 <form accept-charset="UTF-8" action="/notifications/subscribe" class="js-social-container" data-autosubmit="true" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="xQc6mN1svreL+lTqg+MURSDxxWcm+llweH0/zqqMMZqQ6uq6DK84MjQxAB2/bjH0PZeZP97bDGFs/2j3sAIDZw==" /></div> <input id="repository_id" name="repository_id" type="hidden" value="6942323" />
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193
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194 <div class="select-menu js-menu-container js-select-menu">
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195 <a class="social-count js-social-count" href="/bgruening/galaxytools/watchers">
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196 18
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197 </a>
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198 <a href="/bgruening/galaxytools/subscription"
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199 class="minibutton select-menu-button with-count js-menu-target" role="button" tabindex="0" aria-haspopup="true">
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200 <span class="js-select-button">
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201 <span class="octicon octicon-eye"></span>
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202 Watch
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203 </span>
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204 </a>
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205
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206 <div class="select-menu-modal-holder">
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207 <div class="select-menu-modal subscription-menu-modal js-menu-content" aria-hidden="true">
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208 <div class="select-menu-header">
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209 <span class="select-menu-title">Notifications</span>
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210 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span>
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211 </div> <!-- /.select-menu-header -->
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212
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213 <div class="select-menu-list js-navigation-container" role="menu">
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214
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215 <div class="select-menu-item js-navigation-item selected" role="menuitem" tabindex="0">
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216 <span class="select-menu-item-icon octicon octicon-check"></span>
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217 <div class="select-menu-item-text">
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218 <input checked="checked" id="do_included" name="do" type="radio" value="included" />
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219 <h4>Not watching</h4>
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220 <span class="description">Be notified when participating or @mentioned.</span>
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221 <span class="js-select-button-text hidden-select-button-text">
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222 <span class="octicon octicon-eye"></span>
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223 Watch
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224 </span>
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225 </div>
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226 </div> <!-- /.select-menu-item -->
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227
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228 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0">
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229 <span class="select-menu-item-icon octicon octicon octicon-check"></span>
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230 <div class="select-menu-item-text">
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231 <input id="do_subscribed" name="do" type="radio" value="subscribed" />
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232 <h4>Watching</h4>
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233 <span class="description">Be notified of all conversations.</span>
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234 <span class="js-select-button-text hidden-select-button-text">
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235 <span class="octicon octicon-eye"></span>
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236 Unwatch
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237 </span>
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238 </div>
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239 </div> <!-- /.select-menu-item -->
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240
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241 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0">
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242 <span class="select-menu-item-icon octicon octicon-check"></span>
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243 <div class="select-menu-item-text">
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244 <input id="do_ignore" name="do" type="radio" value="ignore" />
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245 <h4>Ignoring</h4>
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246 <span class="description">Never be notified.</span>
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247 <span class="js-select-button-text hidden-select-button-text">
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248 <span class="octicon octicon-mute"></span>
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249 Stop ignoring
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250 </span>
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251 </div>
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252 </div> <!-- /.select-menu-item -->
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253
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254 </div> <!-- /.select-menu-list -->
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255
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256 </div> <!-- /.select-menu-modal -->
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257 </div> <!-- /.select-menu-modal-holder -->
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258 </div> <!-- /.select-menu -->
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259
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260 </form>
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261 </li>
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262
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263 <li>
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264
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265 <div class="js-toggler-container js-social-container starring-container on">
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266
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267 <form accept-charset="UTF-8" action="/bgruening/galaxytools/unstar" class="js-toggler-form starred js-unstar-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="hX1BLjPidgGLyGX+WUaclslZi5gffSpUHUgikaubHCbcVZiOJdh9pZX7Ve4g1MrS69qyYNUqbNIvlrHyCvYHNQ==" /></div>
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268 <button
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269 class="minibutton with-count js-toggler-target star-button"
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270 aria-label="Unstar this repository" title="Unstar bgruening/galaxytools">
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271 <span class="octicon octicon-star"></span>
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272 Unstar
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273 </button>
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274 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers">
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275 20
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276 </a>
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277 </form>
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278 <form accept-charset="UTF-8" action="/bgruening/galaxytools/star" class="js-toggler-form unstarred js-star-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="3kLbdwpEev/anO4PVFRQa7wdfytFYEdQ0ynsR23aAMNSBJjV9NCgOBrsuU+0TCUDYd/yur7oSwV8D9yZ2p2WBA==" /></div>
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279 <button
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280 class="minibutton with-count js-toggler-target star-button"
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281 aria-label="Star this repository" title="Star bgruening/galaxytools">
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282 <span class="octicon octicon-star"></span>
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283 Star
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284 </button>
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285 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers">
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286 20
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287 </a>
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288 </form> </div>
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289
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290 </li>
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291
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292
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293 <li>
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294 <a href="/bgruening/galaxytools/fork" class="minibutton with-count js-toggler-target fork-button tooltipped-n" title="Fork your own copy of bgruening/galaxytools to your account" aria-label="Fork your own copy of bgruening/galaxytools to your account" rel="nofollow" data-method="post">
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295 <span class="octicon octicon-repo-forked"></span>
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296 Fork
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297 </a>
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326 <span class="octicon octicon-code"></span> <span class="full-word">Code</span>
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328 </a> </li>
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329
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330 <li class="tooltipped tooltipped-w" aria-label="Issues">
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331 <a href="/bgruening/galaxytools/issues" aria-label="Issues" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g i" data-selected-links="repo_issues repo_labels repo_milestones /bgruening/galaxytools/issues">
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332 <span class="octicon octicon-issue-opened"></span> <span class="full-word">Issues</span>
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333 <span class="js-issue-replace-counter"></span>
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334 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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335 </a> </li>
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336
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337 <li class="tooltipped tooltipped-w" aria-label="Pull Requests">
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339 <span class="octicon octicon-git-pull-request"></span> <span class="full-word">Pull Requests</span>
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343
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345 <li class="tooltipped tooltipped-w" aria-label="Wiki">
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358 </a> </li>
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359
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360 <li class="tooltipped tooltipped-w" aria-label="Graphs">
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361 <a href="/bgruening/galaxytools/graphs" aria-label="Graphs" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="repo_graphs repo_contributors /bgruening/galaxytools/graphs">
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367
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374 <div class="clone-url open"
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383 </span>
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385 </div>
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386
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387
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388 <div class="clone-url "
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389 data-protocol-type="ssh"
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390 data-url="/users/set_protocol?protocol_selector=ssh&protocol_type=clone">
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397 </span>
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398 </div>
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399 </div>
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400
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401
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402 <div class="clone-url "
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403 data-protocol-type="subversion"
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404 data-url="/users/set_protocol?protocol_selector=subversion&protocol_type=clone">
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406 <div class="input-group">
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407 <input type="text" class="input-mini input-monospace js-url-field"
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408 value="https://github.com/bgruening/galaxytools" readonly="readonly">
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409 <span class="input-group-button">
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410 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
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411 </span>
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412 </div>
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413 </div>
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414
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415
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416 <p class="clone-options">You can clone with
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417 <a href="#" class="js-clone-selector" data-protocol="http">HTTPS</a>,
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418 <a href="#" class="js-clone-selector" data-protocol="ssh">SSH</a>,
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419 or <a href="#" class="js-clone-selector" data-protocol="subversion">Subversion</a>.
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420 <a href="https://help.github.com/articles/which-remote-url-should-i-use" class="help tooltipped tooltipped-n" aria-label="Get help on which URL is right for you.">
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421 <span class="octicon octicon-question"></span>
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422 </a>
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423 </p>
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424
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425 <a href="http://mac.github.com" data-url="github-mac://openRepo/https://github.com/bgruening/galaxytools" class="minibutton sidebar-button js-conduit-rewrite-url" title="Save bgruening/galaxytools to your computer and use it in GitHub Desktop." aria-label="Save bgruening/galaxytools to your computer and use it in GitHub Desktop.">
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426 <span class="octicon octicon-device-desktop"></span>
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427 Clone in Desktop
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428 </a>
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429
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430
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431 <a href="/bgruening/galaxytools/archive/master.zip"
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432 class="minibutton sidebar-button"
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437 Download ZIP
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438 </a>
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440 </div><!-- /.repository-sidebar -->
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441
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442 <div id="js-repo-pjax-container" class="repository-content context-loader-container" data-pjax-container>
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443
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444
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445 <a href="/bgruening/galaxytools/blob/3a57ada6062aa513010b1bc15048135d4207f337/samtools_sort/tool_dependencies.xml" class="hidden js-permalink-shortcut" data-hotkey="y">Permalink</a>
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446
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457 <span class="octicon octicon-git-branch"></span>
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458 <i>branch:</i>
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459 <span class="js-select-button css-truncate-target">master</span>
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461
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468 </div> <!-- /.select-menu-header -->
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478 </li>
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479 <li class="select-menu-tab">
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480 <a href="#" data-tab-filter="tags" class="js-select-menu-tab">Tags</a>
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526
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539 <span class="octicon octicon-clippy"></span>
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540 </button>
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542
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548
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550 <div class="file-history-tease-header">
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551 <img alt="Bjรถrn Grรผning" class="avatar" data-user="469983" height="24" src="https://avatars1.githubusercontent.com/u/469983?v=2&s=48" width="24" />
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552 <span class="author"><a href="/bgruening" rel="author">bgruening</a></span>
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553 <time datetime="2014-06-20T17:05:21+02:00" is="relative-time">June 20, 2014</time>
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554 <div class="commit-title">
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555 <a href="/bgruening/galaxytools/commit/7e2a1f1f8338602cba2ae409df31b92bd12a97d6" class="message" data-pjax="true" title="add samtools sort">add samtools sort</a>
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556 </div>
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558
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559 <div class="participation">
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560 <p class="quickstat">
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561 <a href="#blob_contributors_box" rel="facebox">
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562 <strong>1</strong>
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563 contributor
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564 </a>
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565 </p>
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566
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567 </div>
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573 <a href="/bgruening">bgruening</a>
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574 </li>
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583 <span>7 lines (6 sloc)</span>
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585 <span>0.191 kb</span>
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593
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