Mercurial > repos > devteam > samtools_idxstats

changeset 4:56838051b673 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_idxstats commit a972815cbd43dea553b3c0e4ad548f35d0023228-dirty
author iuc
date Sun, 28 Jul 2019 14:48:13 -0400
parents 20fea18b2830
children fd87401a3da6
files samtools_idxstats.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/samtools_idxstats.xml	Thu Sep 27 08:58:41 2018 -0400
+++ b/samtools_idxstats.xml	Sun Jul 28 14:48:13 2019 -0400
@@ -7,8 +7,9 @@
     <expand macro="stdio"/>
     <expand macro="version_command"/>
     <command><![CDATA[
-        @PREPARE_IDX@
-        samtools idxstats infile > '${output}'
+@ADDTHREADS@
+@PREPARE_IDX@
+samtools idxstats -@ \$addthreads infile  > '${output}'
     ]]></command>
     <inputs>
         <param name="input" type="data" format="bam,cram" label="BAM file" />