Mercurial > repos > devteam > samtools_flagstat
comparison samtools_flagstat.xml @ 9:5fbe9dcaef98 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 558d30ff047fe2f62658e8b57e27ebe8db77ede1"
| author | iuc |
|---|---|
| date | Fri, 06 Sep 2019 11:21:12 -0400 |
| parents | 5fd05c7b42f8 |
| children | 9b44224f5a76 |
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| 8:5fd05c7b42f8 | 9:5fbe9dcaef98 |
|---|---|
| 1 <tool id="samtools_flagstat" name="Samtools flagstat" version="2.0.2"> | 1 <tool id="samtools_flagstat" name="Samtools flagstat" version="2.0.3"> |
| 2 <description>tabulate descriptive stats for BAM datset</description> | 2 <description>tabulate descriptive stats for BAM datset</description> |
| 3 | 3 |
| 4 <macros> | 4 <macros> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 43 0 + 0 properly paired (0.00%:nan%) | 43 0 + 0 properly paired (0.00%:nan%) |
| 44 0 + 0 with itself and mate mapped | 44 0 + 0 with itself and mate mapped |
| 45 25 + 0 singletons (12.50%:nan%) | 45 25 + 0 singletons (12.50%:nan%) |
| 46 0 + 0 with mate mapped to a different chr | 46 0 + 0 with mate mapped to a different chr |
| 47 0 + 0 with mate mapped to a different chr (mapQ>=5) | 47 0 + 0 with mate mapped to a different chr (mapQ>=5) |
| 48 | |
| 49 The results of samtools flagstat can be visualized with MultiQC. | |
| 48 ]]></help> | 50 ]]></help> |
| 49 <expand macro="citations"/> | 51 <expand macro="citations"/> |
| 50 </tool> | 52 </tool> |