Mercurial > repos > devteam > samtools_flagstat

annotate test-data/samtools_flagstat_out1.txt @ 4:10b658bef71a draft

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:54:34 -0400
parents 480404be9626
children 28eb6a47be96
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
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10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
1 200 + 0 in total (QC-passed reads + QC-failed reads)
3
480404be9626 Uploaded version 1.0.3 for samtools 1.1
devteam
parents: 2
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2 0 + 0 secondary
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10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
3 0 + 0 supplementary
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
4 0 + 0 duplicates
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10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
5 25 + 0 mapped (12.50%:nan%)
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
6 200 + 0 paired in sequencing
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
7 100 + 0 read1
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
8 100 + 0 read2
10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
9 0 + 0 properly paired (0.00%:nan%)
0
1bbde47ebd2a Uploaded
devteam
parents:
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10 0 + 0 with itself and mate mapped
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10b658bef71a planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 3
diff changeset
11 25 + 0 singletons (12.50%:nan%)
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
12 0 + 0 with mate mapped to a different chr
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
13 0 + 0 with mate mapped to a different chr (mapQ>=5)