Mercurial > repos > devteam > samtool_filter2

changeset 10:5596f413349f draft

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Uploaded new version from GH
author devteam
date Mon, 10 Nov 2014 16:57:03 -0500
parents ce2ed9f2d811
children a2b5298e7239
files samtool_filter2.xml tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/samtool_filter2.xml	Sun Dec 01 22:40:47 2013 -0500
+++ b/samtool_filter2.xml	Mon Nov 10 16:57:03 2014 -0500
@@ -147,6 +147,7 @@
     <data name="output1" format_source="input1" label="${tool.name} on ${on_string}: ${input1.datatype.file_ext}">
       <change_format>
         <when input="outputtype" value="bam" format="bam" />
+        <when input="outputtype" value="sam" format="sam" />
       </change_format>
     </data>
   </outputs>
--- a/tool_dependencies.xml	Sun Dec 01 22:40:47 2013 -0500
+++ b/tool_dependencies.xml	Mon Nov 10 16:57:03 2014 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="samtools" version="0.1.18">
-        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  <package name="samtools" version="0.1.18">
+      <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>