Mercurial > repos > devteam > picard

annotate test-data/picard_CollectGcBiasMetrics_test1.tab @ 7:08f69add4d06 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
author devteam
date Sun, 27 Nov 2016 15:11:36 -0500
parents 52fdfc45590a
children 486d7500da69
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52fdfc45590a planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
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1 ## htsjdk.samtools.metrics.StringHeader
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08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
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2 # picard.analysis.CollectGcBiasMetrics CHART_OUTPUT=/tmp/tmp_TYiPX/files/000/dataset_5.dat SUMMARY_OUTPUT=/tmp/tmp_TYiPX/files/000/dataset_3.dat SCAN_WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=5.0E-5 IS_BISULFITE_SEQUENCED=true INPUT=/tmp/tmp_TYiPX/files/000/dataset_1.dat OUTPUT=/tmp/tmp_TYiPX/files/000/dataset_4.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa METRIC_ACCUMULATION_LEVEL=[ALL_READS] STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
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52fdfc45590a planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
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3 ## htsjdk.samtools.metrics.StringHeader
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08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
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4 # Started on: Sun Nov 27 10:39:24 CET 2016
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52fdfc45590a planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
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6 ## METRICS CLASS picard.analysis.GcBiasDetailMetrics
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7 ACCUMULATION_LEVEL GC WINDOWS READ_STARTS MEAN_BASE_QUALITY NORMALIZED_COVERAGE ERROR_BAR_WIDTH SAMPLE LIBRARY READ_GROUP
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8 All Reads 0 0 118 20 0 0
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9 All Reads 1 0 0 0 0 0
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10 All Reads 2 0 0 0 0 0
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20 All Reads 12 0 0 0 0 0
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21 All Reads 13 0 0 0 0 0
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22 All Reads 14 0 0 0 0 0
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23 All Reads 15 0 0 0 0 0
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24 All Reads 16 0 0 0 0 0
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25 All Reads 17 0 0 0 0 0
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26 All Reads 18 0 0 0 0 0
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27 All Reads 19 0 0 0 0 0
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28 All Reads 20 0 0 0 0 0
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29 All Reads 21 0 0 0 0 0
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30 All Reads 22 0 0 0 0 0
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31 All Reads 23 0 0 0 0 0
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32 All Reads 24 2 0 0 0 0
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33 All Reads 25 15 0 0 0 0
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34 All Reads 26 13 0 0 0 0
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35 All Reads 27 18 0 0 0 0
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36 All Reads 28 50 5 21 4.843529 2.166092
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37 All Reads 29 47 0 0 0 0
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38 All Reads 30 63 0 0 0 0
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39 All Reads 31 97 4 20 1.997332 0.998666
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40 All Reads 32 167 3 23 0.870095 0.50235
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
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41 All Reads 33 178 4 22 1.088434 0.544217
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42 All Reads 34 225 8 22 1.722144 0.60887
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43 All Reads 35 291 5 22 0.832222 0.372181
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44 All Reads 36 391 1 21 0.123875 0.123875
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45 All Reads 37 506 4 24 0.382888 0.191444
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46 All Reads 38 570 0 0 0 0
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47 All Reads 39 640 0 0 0 0
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48 All Reads 40 729 0 0 0 0
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49 All Reads 41 846 1 24 0.057252 0.057252
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50 All Reads 42 1060 1 24 0.045694 0.045694
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51 All Reads 43 1182 13 22 0.532706 0.147746
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52 All Reads 44 1113 8 22 0.348142 0.123087
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53 All Reads 45 1161 7 20 0.29203 0.110377
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54 All Reads 46 1113 5 20 0.217589 0.097309
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55 All Reads 47 1035 8 23 0.374379 0.132363
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56 All Reads 48 956 9 23 0.455981 0.151994
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57 All Reads 49 913 1 24 0.053051 0.053051
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58 All Reads 50 785 5 22 0.308505 0.137968
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59 All Reads 51 607 5 22 0.398973 0.178426
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60 All Reads 52 436 104 22 11.553373 1.132901
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61 All Reads 53 354 13 23 1.778697 0.493322
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62 All Reads 54 288 0 0 0 0
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63 All Reads 55 232 6 21 1.252637 0.511387
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64 All Reads 56 133 0 0 0 0
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65 All Reads 57 108 2 24 0.89695 0.634239
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66 All Reads 58 65 0 0 0 0
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67 All Reads 59 38 0 0 0 0
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68 All Reads 60 29 0 0 0 0
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69 All Reads 61 10 0 0 0 0
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70 All Reads 62 2 0 0 0 0
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71 All Reads 63 0 0 0 0 0
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72 All Reads 64 0 0 0 0 0
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73 All Reads 65 0 0 0 0 0
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74 All Reads 66 0 0 0 0 0
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75 All Reads 67 0 0 0 0 0
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76 All Reads 68 0 0 0 0 0
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77 All Reads 69 0 0 0 0 0
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78 All Reads 70 0 0 0 0 0
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79 All Reads 71 0 0 0 0 0
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80 All Reads 72 0 0 0 0 0
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81 All Reads 73 0 0 0 0 0
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82 All Reads 74 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
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parents: 3
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83 All Reads 75 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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84 All Reads 76 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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85 All Reads 77 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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86 All Reads 78 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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87 All Reads 79 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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88 All Reads 80 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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89 All Reads 81 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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90 All Reads 82 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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91 All Reads 83 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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92 All Reads 84 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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93 All Reads 85 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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94 All Reads 86 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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95 All Reads 87 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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96 All Reads 88 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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97 All Reads 89 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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98 All Reads 90 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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99 All Reads 91 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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100 All Reads 92 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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101 All Reads 93 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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102 All Reads 94 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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103 All Reads 95 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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104 All Reads 96 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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105 All Reads 97 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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106 All Reads 98 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
devteam
parents: 3
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107 All Reads 99 0 0 0 0 0
08f69add4d06 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92
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108 All Reads 100 0 0 0 0 0
3
52fdfc45590a planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
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109
52fdfc45590a planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
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