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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_vcftools_0_1_11 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 18:48:06 -0500
parents 4081df719fff
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="vcftools" version="0.1.11">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.11.tar.gz</action>
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7 <action type="shell_command">make</action>
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8 <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action>
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9 <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. -->
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10 <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action>
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11 <action type="set_environment">
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12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable>
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13 </action>
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5fc60c9d748f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_vcftools_0_1_11 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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14 <action type="set_environment">
5fc60c9d748f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_vcftools_0_1_11 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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15 <environment_variable name="PERL5LIB" action="prepend_to">$INSTALL_DIR/vcftools/lib/perl5/site_perl</environment_variable>
5fc60c9d748f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_vcftools_0_1_11 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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16 </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project
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21 </readme>
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22 </package>
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23 </tool_dependency>