Mercurial > repos > devteam > package_tophat2_2_0_9
changeset 1:976fbb88df15 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_tophat2_2_0_9 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
| author | devteam |
|---|---|
| date | Fri, 18 Dec 2015 18:47:37 -0500 |
| parents | bac5f59d20d8 |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Jan 23 12:30:34 2014 -0500 +++ b/tool_dependencies.xml Fri Dec 18 18:47:37 2015 -0500 @@ -19,11 +19,11 @@ </actions> <actions> <package name="samtools" version="0.1.18"> - <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <action type="download_by_url">http://tophat.cbcb.umd.edu/downloads/tophat-2.0.9.tar.gz</action> + <action type="download_by_url">http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.9.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </action> <action type="shell_command">./configure --prefix=$INSTALL_DIR --with-bam=$BAM_ROOT</action> <action type="shell_command">make && make install</action>