Mercurial > repos > devteam > package_tophat2_2_0_9

diff tool_dependencies.xml @ 1:976fbb88df15 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_tophat2_2_0_9 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 18:47:37 -0500
parents bac5f59d20d8
children
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jan 23 12:30:34 2014 -0500
+++ b/tool_dependencies.xml	Fri Dec 18 18:47:37 2015 -0500
@@ -19,11 +19,11 @@
                 </actions>
                 <actions>
                   <package name="samtools" version="0.1.18">
-                      <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+                      <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </package>
-                    <action type="download_by_url">http://tophat.cbcb.umd.edu/downloads/tophat-2.0.9.tar.gz</action>
+                    <action type="download_by_url">http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.9.tar.gz</action>
                     <action type="set_environment_for_install">
-                      <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+                      <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
                     </action>
                     <action type="shell_command">./configure --prefix=$INSTALL_DIR --with-bam=$BAM_ROOT</action>
                     <action type="shell_command">make &amp;&amp; make install</action>