Mercurial > repos > devteam > package_rpy_1_0_3
annotate tool_dependencies.xml @ 1:3e11ba53f2a6 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author | devteam |
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date | Fri, 18 Dec 2015 18:46:37 -0500 |
parents | c0eb80864491 |
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rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool_dependency> | |
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3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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3 <package name="numpy" version="1.9"> |
3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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4 <repository changeset_revision="f9289486f06d" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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5 </package> |
3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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6 <package name="R" version="2.11.0"> |
3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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7 <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
0 | 8 </package> |
9 <package name="rpy" version="1.0.3"> | |
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3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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10 <install version="1.0"> |
3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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11 <actions> |
3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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12 <!-- |
3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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13 Need to download from depot.galaxyproject.org, because the distributed version of rpy 1.0.3 |
0 | 14 doesn't recognize R 2.11.0 as a valid version. |
15 --> | |
16 <action type="download_by_url">http://depot.galaxyproject.org/package/source/rpy-1.0.3.tar.gz</action> | |
17 <action type="set_environment_for_install"> | |
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3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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18 <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
devteam
parents:
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19 <package name="R" version="2.11.0" /> |
0 | 20 </repository> |
21 </action> | |
22 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
23 <action type="shell_command"> | |
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3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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24 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
0 | 25 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin |
26 </action> | |
27 <action type="set_environment"> | |
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3e11ba53f2a6
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
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28 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
0 | 29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
30 <environment_variable action="set_to" name="PYTHONPATH_RPY">$INSTALL_DIR/lib/python</environment_variable> | |
31 <environment_variable action="set_to" name="PATH_RPY">$INSTALL_DIR/bin</environment_variable> | |
32 </action> | |
33 </actions> | |
34 </install> | |
35 <readme /> | |
36 </package> | |
37 </tool_dependency> |