Mercurial > repos > devteam > package_r_2_11_0
changeset 2:6d84e7988416
Uploaded
| author | devteam |
|---|---|
| date | Mon, 03 Mar 2014 16:31:24 -0500 |
| parents | 4692358aa325 |
| children | ec964438bb46 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 76 insertions(+), 13 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Aug 26 16:16:04 2013 -0400 +++ b/tool_dependencies.xml Mon Mar 03 16:31:24 2014 -0500 @@ -2,27 +2,90 @@ <tool_dependency> <package name="R" version="2.11.0"> <install version="1.0"> - <actions> - <action type="download_by_url">http://cran.rstudio.com/src/base/R-2/R-2.11.0.tar.gz</action> - <action type="shell_command"> - ./configure --enable-R-shlib \ - --with-readline=no \ - --with-x=no \ - --prefix=$INSTALL_DIR \ - --libdir=$INSTALL_DIR/lib \ - --disable-R-framework - </action> - <action type="shell_command">make && make install</action> + <actions_group> + <actions architecture="x86_64" os="darwin"> + <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/R/R-2.11.0-Darwin-x86_64.tgz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + </actions> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/R/R-2.11.0-Linux-x86_64.tgz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + </actions> + <actions> + <package name="readline" version="6.2"> + <repository changeset_revision="f4201ff5aa66" name="package_readline_6_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="libpng" version="1.6.7"> + <repository changeset_revision="a0b0e0281cc4" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="cairo" version="1.12.14"> + <repository changeset_revision="4f7c800b1050" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="pixman" version="0.32.4"> + <repository changeset_revision="bcf53d429118" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="freetype" version="2.5.2"> + <repository changeset_revision="86bbb06ec11b" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <action type="set_environment_for_install"> + <repository changeset_revision="f4201ff5aa66" name="package_readline_6_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="readline" version="6.2" /> + </repository> + <repository changeset_revision="a0b0e0281cc4" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="libpng" version="1.6.7" /> + </repository> + <repository changeset_revision="4f7c800b1050" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="cairo" version="1.12.14" /> + </repository> + <repository changeset_revision="bcf53d429118" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="pixman" version="0.32.4" /> + </repository> + <repository changeset_revision="86bbb06ec11b" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="freetype" version="2.5.2" /> + </repository> + </action> + <action type="shell_command"> + export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIBS" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIBS" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && + export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + ./configure --with-blas \ + --with-lapack \ + --with-readline \ + --with-cairo \ + --with-libpng \ + --without-x \ + --enable-R-shlib \ + --disable-R-framework \ + --libdir=$INSTALL_DIR/lib \ + --prefix=$INSTALL_DIR + </action> + <action type="make_install" /> + <action type="shell_command">sed -i 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> + </actions> <action type="set_environment"> + <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> </action> - </actions> + </actions_group> </install> <readme> + The precompiled Linux version of this package was built 2014-02-28. + The precompiled OSX version of this package was built 2014-03-03. R is a free software environment for statistical computing and graphics. NOTE: See custom compilation options above </readme> </package> -</tool_dependency> \ No newline at end of file +</tool_dependency>