Mercurial > repos > devteam > package_r_2_11_0
annotate tool_dependencies.xml @ 3:ec964438bb46
Uploaded tool dependency definition with corrected paths.
| author | devteam |
|---|---|
| date | Tue, 04 Mar 2014 08:32:27 -0500 |
| parents | 6d84e7988416 |
| children | bd5df464b764 |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="R" version="2.11.0"> | |
| 4 <install version="1.0"> | |
| 2 | 5 <actions_group> |
| 6 <actions architecture="x86_64" os="darwin"> | |
| 7 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/R/R-2.11.0-Darwin-x86_64.tgz</action> | |
| 8 <action type="move_directory_files"> | |
| 9 <source_directory>.</source_directory> | |
|
3
ec964438bb46
Uploaded tool dependency definition with corrected paths.
devteam
parents:
2
diff
changeset
|
10 <destination_directory>$INSTALL_DIR</destination_directory> |
| 2 | 11 </action> |
| 12 </actions> | |
| 13 <actions architecture="x86_64" os="linux"> | |
| 14 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/R/R-2.11.0-Linux-x86_64.tgz</action> | |
| 15 <action type="move_directory_files"> | |
| 16 <source_directory>.</source_directory> | |
|
3
ec964438bb46
Uploaded tool dependency definition with corrected paths.
devteam
parents:
2
diff
changeset
|
17 <destination_directory>$INSTALL_DIR</destination_directory> |
| 2 | 18 </action> |
| 19 </actions> | |
| 20 <actions> | |
| 21 <package name="readline" version="6.2"> | |
| 22 <repository changeset_revision="f4201ff5aa66" name="package_readline_6_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
| 23 </package> | |
| 24 <package name="libpng" version="1.6.7"> | |
| 25 <repository changeset_revision="a0b0e0281cc4" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
| 26 </package> | |
| 27 <package name="cairo" version="1.12.14"> | |
| 28 <repository changeset_revision="4f7c800b1050" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
| 29 </package> | |
| 30 <package name="pixman" version="0.32.4"> | |
| 31 <repository changeset_revision="bcf53d429118" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
| 32 </package> | |
| 33 <package name="freetype" version="2.5.2"> | |
| 34 <repository changeset_revision="86bbb06ec11b" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
| 35 </package> | |
| 36 <action type="set_environment_for_install"> | |
| 37 <repository changeset_revision="f4201ff5aa66" name="package_readline_6_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 38 <package name="readline" version="6.2" /> | |
| 39 </repository> | |
| 40 <repository changeset_revision="a0b0e0281cc4" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 41 <package name="libpng" version="1.6.7" /> | |
| 42 </repository> | |
| 43 <repository changeset_revision="4f7c800b1050" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 44 <package name="cairo" version="1.12.14" /> | |
| 45 </repository> | |
| 46 <repository changeset_revision="bcf53d429118" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 47 <package name="pixman" version="0.32.4" /> | |
| 48 </repository> | |
| 49 <repository changeset_revision="86bbb06ec11b" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 50 <package name="freetype" version="2.5.2" /> | |
| 51 </repository> | |
| 52 </action> | |
| 53 <action type="shell_command"> | |
| 54 export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIBS" && | |
| 55 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIBS" && | |
| 56 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && | |
| 57 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" && | |
| 58 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && | |
| 59 export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && | |
| 60 export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && | |
| 61 export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && | |
| 62 ./configure --with-blas \ | |
| 63 --with-lapack \ | |
| 64 --with-readline \ | |
| 65 --with-cairo \ | |
| 66 --with-libpng \ | |
| 67 --without-x \ | |
| 68 --enable-R-shlib \ | |
| 69 --disable-R-framework \ | |
| 70 --libdir=$INSTALL_DIR/lib \ | |
| 71 --prefix=$INSTALL_DIR | |
| 72 </action> | |
| 73 <action type="make_install" /> | |
| 74 <action type="shell_command">sed -i 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> | |
| 75 </actions> | |
| 0 | 76 <action type="set_environment"> |
| 2 | 77 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> |
| 0 | 78 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> |
| 79 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> | |
|
3
ec964438bb46
Uploaded tool dependency definition with corrected paths.
devteam
parents:
2
diff
changeset
|
80 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 0 | 81 </action> |
| 2 | 82 </actions_group> |
| 0 | 83 </install> |
| 84 <readme> | |
| 2 | 85 The precompiled Linux version of this package was built 2014-02-28. |
| 86 The precompiled OSX version of this package was built 2014-03-03. | |
| 0 | 87 R is a free software environment for statistical computing and graphics. |
| 88 NOTE: See custom compilation options above | |
| 89 </readme> | |
| 90 </package> | |
| 2 | 91 </tool_dependency> |