Mercurial > repos > devteam > package_emboss_5_0_0
comparison tool_dependencies.xml @ 9:423c17dafd88 draft default tip
Uploaded updated tool dependency definition.
| author | devteam |
|---|---|
| date | Wed, 11 Dec 2013 16:22:59 -0500 |
| parents | 27daa4034544 |
| children |
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| 8:27daa4034544 | 9:423c17dafd88 |
|---|---|
| 26 </actions> | 26 </actions> |
| 27 <actions> | 27 <actions> |
| 28 <package name="libx11" version="1.5.0"> | 28 <package name="libx11" version="1.5.0"> |
| 29 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 29 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 30 </package> | 30 </package> |
| 31 <package name="libgd" version="2.1.0"> | |
| 32 <repository changeset_revision="979b30851e9a" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
| 33 </package> | |
| 31 <package name="libxproto" version="7.0.23"> | 34 <package name="libxproto" version="7.0.23"> |
| 32 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 35 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 33 </package> | 36 </package> |
| 34 <package name="libxcb" version="1.9.1"> | 37 <package name="libxcb" version="1.9.1"> |
| 35 <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 38 <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 36 </package> | 39 </package> |
| 37 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action> | 40 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action> |
| 38 <action type="set_environment_for_install"> | 41 <action type="set_environment_for_install"> |
| 42 <repository changeset_revision="979b30851e9a" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 43 <package name="libgd" version="2.1.0" /> | |
| 44 </repository> | |
| 39 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 45 <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> |
| 40 <package name="libx11" version="1.5.0" /> | 46 <package name="libx11" version="1.5.0" /> |
| 41 </repository> | 47 </repository> |
| 42 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 48 <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> |
| 43 <package name="libxproto" version="7.0.23" /> | 49 <package name="libxproto" version="7.0.23" /> |
| 46 <package name="libxcb" version="1.9.1" /> | 52 <package name="libxcb" version="1.9.1" /> |
| 47 </repository> | 53 </repository> |
| 48 </action> | 54 </action> |
| 49 <action type="shell_command"> | 55 <action type="shell_command"> |
| 50 export LDFLAGS="-L$XCB_LIBS -lm" | 56 export LDFLAGS="-L$XCB_LIBS -lm" |
| 51 export CFLAGS="-I$XPROTO_INCLUDES" && ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR | 57 export CFLAGS="-I$XPROTO_INCLUDES" && \ |
| 58 ./configure --prefix=$INSTALL_DIR \ | |
| 59 --x-includes=$X11_INCLUDE_DIR \ | |
| 60 --x-libraries=$X11_LIB_DIR \ | |
| 61 --with-pngdriver=$GD_ROOT | |
| 52 </action> | 62 </action> |
| 53 <action type="shell_command">make && make install</action> | 63 <action type="shell_command">make && make install</action> |
| 54 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> | 64 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> |
| 55 <action type="change_directory">PHYLIP-3.6b</action> | 65 <action type="change_directory">PHYLIP-3.6b</action> |
| 56 <action type="shell_command"> | 66 <action type="shell_command"> |
| 57 export LDFLAGS="-L$XCB_LIBS -lm" | 67 export LDFLAGS="-L$XCB_LIBS -lm" |
| 58 export CFLAGS="-I$XPROTO_INCLUDES" && ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR | 68 export CFLAGS="-I$XPROTO_INCLUDES" && \ |
| 69 ./configure --prefix=$INSTALL_DIR \ | |
| 70 --x-includes=$X11_INCLUDE_DIR \ | |
| 71 --x-libraries=$X11_LIB_DIR \ | |
| 72 --with-pngdriver=$GD_ROOT | |
| 59 </action> | 73 </action> |
| 60 <action type="shell_command">make && make install</action> | 74 <action type="shell_command">make && make install</action> |
| 61 </actions> | 75 </actions> |
| 62 <action type="set_environment"> | 76 <action type="set_environment"> |
| 63 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 77 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |