Mercurial > repos > devteam > package_emboss_5_0_0

changeset 9:423c17dafd88 draft default tip

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Uploaded updated tool dependency definition.
author devteam
date Wed, 11 Dec 2013 16:22:59 -0500
parents 27daa4034544
children
files tool_dependencies.xml
diffstat 1 files changed, 16 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Dec 10 14:11:14 2013 -0500
+++ b/tool_dependencies.xml	Wed Dec 11 16:22:59 2013 -0500
@@ -28,6 +28,9 @@
                     <package name="libx11" version="1.5.0">
                         <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
                     </package>
+                    <package name="libgd" version="2.1.0">
+                        <repository changeset_revision="979b30851e9a" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+                    </package>
                     <package name="libxproto" version="7.0.23">
                         <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
                     </package>
@@ -36,6 +39,9 @@
                     </package>
                     <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
                     <action type="set_environment_for_install">
+                        <repository changeset_revision="979b30851e9a" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="libgd" version="2.1.0" />
+                        </repository>
                         <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
                             <package name="libx11" version="1.5.0" />
                         </repository>
@@ -48,14 +54,22 @@
                     </action>
                     <action type="shell_command">
                         export LDFLAGS="-L$XCB_LIBS -lm"
-                        export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
+                        export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
+                        ./configure --prefix=$INSTALL_DIR \
+                        --x-includes=$X11_INCLUDE_DIR \
+                        --x-libraries=$X11_LIB_DIR \
+                        --with-pngdriver=$GD_ROOT
                     </action>
                     <action type="shell_command">make &amp;&amp; make install</action>
                     <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
                     <action type="change_directory">PHYLIP-3.6b</action>
                     <action type="shell_command">
                         export LDFLAGS="-L$XCB_LIBS -lm"
-                        export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
+                        export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
+                        ./configure --prefix=$INSTALL_DIR \
+                        --x-includes=$X11_INCLUDE_DIR \
+                        --x-libraries=$X11_LIB_DIR \
+                        --with-pngdriver=$GD_ROOT
                     </action>
                     <action type="shell_command">make &amp;&amp; make install</action>
                 </actions>