Mercurial > repos > devteam > package_emboss_5_0_0
comparison tool_dependencies.xml @ 2:3569b0e8a8c1 draft
Uploaded tool dependency definition that explicitly prepends $INSTALL_DIR/bin to the $PATH environment variable.
| author | devteam |
|---|---|
| date | Tue, 25 Jun 2013 15:36:12 -0400 |
| parents | f117a9d9dc9c |
| children | 0e97d4936c23 |
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| 1:f117a9d9dc9c | 2:3569b0e8a8c1 |
|---|---|
| 11 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 11 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> |
| 12 <package name="libx11" version="1.5.0" /> | 12 <package name="libx11" version="1.5.0" /> |
| 13 </repository> | 13 </repository> |
| 14 </action> | 14 </action> |
| 15 <action type="shell_command"> | 15 <action type="shell_command"> |
| 16 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then | 16 if [ -z $X11_LIB_DIR ] [ -z $X11_INCLUDE_DIR ]; then |
| 17 ./configure --prefix=$INSTALL_DIR | 17 ./configure --prefix=$INSTALL_DIR |
| 18 else | 18 else |
| 19 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR | 19 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR |
| 20 fi | 20 fi |
| 21 </action> | 21 </action> |
| 22 <action type="shell_command">make && make install</action> | 22 <action type="shell_command">make && make install</action> |
| 23 <action type="download_file" extract="true">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> | 23 <action type="download_file" extract="true">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> |
| 24 <action type="change_directory">PHYLIP-3.6b</action> | 24 <action type="change_directory">PHYLIP-3.6b</action> |
| 25 <action type="shell_command"> | 25 <action type="shell_command"> |
| 26 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then | 26 if [ -z $X11_LIB_DIR ] [ -z $X11_INCLUDE_DIR ]; then |
| 27 ./configure --prefix=$INSTALL_DIR | 27 ./configure --prefix=$INSTALL_DIR |
| 28 else | 28 else |
| 29 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR CFLAGS='-I../include' | 29 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR CFLAGS='-I../include' |
| 30 fi | 30 fi |
| 31 </action> | 31 </action> |
| 32 <action type="shell_command">make && make install</action> | 32 <action type="shell_command">make && make install</action> |
| 33 <action type="set_environment"> | |
| 34 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 35 </action> | |
| 33 </actions> | 36 </actions> |
| 34 </install> | 37 </install> |
| 35 <readme> | 38 <readme> |
| 36 These links provide information for building the Emboss package in most environments. | 39 These links provide information for building the Emboss package in most environments. |
| 37 | 40 |