Mercurial > repos > devteam > package_bioc_qvalue_1_34_0

changeset 0:a02c837d46ce draft

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Uploaded
author devteam
date Wed, 21 Aug 2013 12:41:21 -0400
parents
children 702c422027de
files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Aug 21 12:41:21 2013 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="2.11.0">
+        <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bioc_qvalue" version="1.34.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/qvalue_1.34.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="R" version="2.11.0" />
+                    </repository>
+                </action>
+                <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>