Mercurial > repos > devteam > package_bioc_qvalue_1_34_0

changeset 1:702c422027de draft

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Uploaded tool dependency that puts the qvalue R library in the correct place.
author devteam
date Thu, 06 Mar 2014 16:29:35 -0500
parents a02c837d46ce
children 6f9d6148c957
files tool_dependencies.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Aug 21 12:41:21 2013 -0400
+++ b/tool_dependencies.xml	Thu Mar 06 16:29:35 2014 -0500
@@ -1,20 +1,20 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="R" version="2.11.0">
-        <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bioc_qvalue" version="1.34.0">
         <install version="1.0">
             <actions>
                 <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/qvalue_1.34.0.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="df2d1c96d0e9" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="R" version="2.11.0" />
                     </repository>
                 </action>
-                <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action>
+                <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action>
                 <action type="set_environment">
-                    <environment_variable action="set_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
                 </action>
             </actions>
         </install>