Mercurial > repos > devteam > ncbi_blast_plus
changeset 22:b98c41537d0f draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit b09e12603b1264688a023dd5111c946c01af9e59-dirty
| author | peterjc |
|---|---|
| date | Fri, 19 May 2017 06:04:55 -0400 |
| parents | 771b554bc85d |
| children | 9e483194ebf6 |
| files | tools/ncbi_blast_plus/blastxml_to_tabular.py |
| diffstat | 1 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/tools/ncbi_blast_plus/blastxml_to_tabular.py Thu May 18 07:40:33 2017 -0400 +++ b/tools/ncbi_blast_plus/blastxml_to_tabular.py Fri May 19 06:04:55 2017 -0400 @@ -61,6 +61,7 @@ space character (probably a bug). """ +from __future__ import print_function import os import re @@ -69,7 +70,7 @@ from optparse import OptionParser if "-v" in sys.argv or "--version" in sys.argv: - print "v0.2.00" + print("v0.2.01") sys.exit(0) if sys.version_info[:2] >= (2, 5): @@ -295,7 +296,7 @@ salltitles = "<>".join(name.split(None, 1)[1] for name in hit_def.split(" >")) except IndexError as e: sys.exit("Problem splitting multuple hits?\n%r\n--> %s" % (hit_def, e)) - # print hit_def, "-->", sallseqid + # print(hit_def, "-->", sallseqid) positive = hsp.findtext("Hsp_positive") ppos = "%0.2f" % (100 * float(positive) / float(length)) qframe = hsp.findtext("Hsp_query-frame") @@ -325,7 +326,7 @@ if cols: # Only a subset of the columns are needed values = [values[colnames.index(c)] for c in cols] - # print "\t".join(values) + # print("\t".join(values)) output_handle.write("\t".join(values) + "\n") # prevents ElementTree from growing large datastructure root.clear()