Mercurial > repos > devteam > ncbi_blast_plus
changeset 16:a7b40298fc89 draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 96d587fc6f6cab23c597e88a83daf7eecd0d4162-dirty
| author | peterjc |
|---|---|
| date | Thu, 09 Feb 2017 11:23:24 -0500 |
| parents | 269c5826e86f |
| children | fc571deae017 |
| files | tools/ncbi_blast_plus/blastxml_to_tabular.py tools/ncbi_blast_plus/check_no_duplicates.py tools/ncbi_blast_plus/repository_dependencies.xml |
| diffstat | 3 files changed, 9 insertions(+), 5 deletions(-) [+] |
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--- a/tools/ncbi_blast_plus/blastxml_to_tabular.py Fri Feb 03 12:39:01 2017 -0500 +++ b/tools/ncbi_blast_plus/blastxml_to_tabular.py Thu Feb 09 11:23:24 2017 -0500 @@ -60,9 +60,12 @@ However, check this with "diff -b ..." since BLAST+ sometimes includes an extra space character (probably a bug). """ -import sys + + +import os import re -import os +import sys + from optparse import OptionParser if "-v" in sys.argv or "--version" in sys.argv: @@ -75,7 +78,7 @@ except ImportError: from xml.etree import ElementTree as ElementTree else: - from galaxy import eggs + from galaxy import eggs # noqa - ignore flake8 F401 import pkg_resources pkg_resources.require("elementtree") from elementtree import ElementTree
--- a/tools/ncbi_blast_plus/check_no_duplicates.py Fri Feb 03 12:39:01 2017 -0500 +++ b/tools/ncbi_blast_plus/check_no_duplicates.py Thu Feb 09 11:23:24 2017 -0500 @@ -9,8 +9,9 @@ will return a non-zero error if any duplicate identifiers are found. """ + +import os import sys -import os if "-v" in sys.argv or "--version" in sys.argv: print("v0.0.23")
--- a/tools/ncbi_blast_plus/repository_dependencies.xml Fri Feb 03 12:39:01 2017 -0500 +++ b/tools/ncbi_blast_plus/repository_dependencies.xml Thu Feb 09 11:23:24 2017 -0500 @@ -1,4 +1,4 @@ <?xml version="1.0"?> <repositories description="This requires the BLAST datatype definitions (e.g. the BLAST XML format)."> - <repository changeset_revision="623a3fbe5340" name="blast_datatypes" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="310ec0f47485" name="blast_datatypes" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </repositories>