Mercurial > repos > devteam > ncbi_blast_plus
changeset 43:16e4b61b56e5 draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 3095f1909c6d8975aa05dc3b0d3350579aa7fba3-dirty
| author | peterjc |
|---|---|
| date | Thu, 09 May 2019 06:29:20 -0400 |
| parents | 3f4e7df708f2 |
| children | 0857eae6cf54 |
| files | tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml Fri Feb 22 09:58:23 2019 -0500 +++ b/tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml Thu May 09 06:29:20 2019 -0400 @@ -8,7 +8,7 @@ <command detect_errors="aggressive" strict="true"> ## The command is a Cheetah template which allows some Python based syntax. ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces -blastdbcmd -dbtype $db_opts.db_type -db "${db_opts.database.fields.path}" +blastdbcmd -dbtype $db_opts.db_type -db "${db_opts.database.fields.path.replace(',',' ')}" ##TODO: What about -ctrl_a and -target_only as advanced options?