Mercurial > repos > devteam > ncbi_blast_plus

annotate test-data/tblastn_four_human_vs_rhodopsin.xml @ 13:4dcc9429d6d2 draft

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v0.2.00, updated to depend on BLAST+ 2.5.0
author peterjc
date Mon, 05 Dec 2016 13:58:24 -0500
parents 0e86300e49c0
children 13aa389f4eeb
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>tblastn</BlastOutput_program>
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5 <BlastOutput_version>TBLASTN 2.5.0+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
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9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
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10 <BlastOutput_query-len>406</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM80</Parameters_matrix>
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14 <Parameters_expect>1e-10</Parameters_expect>
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15 <Parameters_gap-open>10</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>F</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>Query_1</Iteration_query-ID>
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24 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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25 <Iteration_query-len>406</Iteration_query-len>
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26 <Iteration_hits>
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27 </Iteration_hits>
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28 <Iteration_stat>
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29 <Statistics>
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30 <Statistics_db-num>0</Statistics_db-num>
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31 <Statistics_db-len>0</Statistics_db-len>
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32 <Statistics_hsp-len>27</Statistics_hsp-len>
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33 <Statistics_eff-space>1239330</Statistics_eff-space>
0
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34 <Statistics_kappa>0.071</Statistics_kappa>
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35 <Statistics_lambda>0.299</Statistics_lambda>
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36 <Statistics_entropy>0.27</Statistics_entropy>
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37 </Statistics>
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38 </Iteration_stat>
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39 <Iteration_message>No hits found</Iteration_message>
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40 </Iteration>
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41 <Iteration>
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42 <Iteration_iter-num>2</Iteration_iter-num>
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43 <Iteration_query-ID>Query_2</Iteration_query-ID>
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44 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
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45 <Iteration_query-len>1161</Iteration_query-len>
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46 <Iteration_hits>
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47 </Iteration_hits>
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48 <Iteration_stat>
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49 <Statistics>
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50 <Statistics_db-num>0</Statistics_db-num>
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51 <Statistics_db-len>0</Statistics_db-len>
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52 <Statistics_hsp-len>31</Statistics_hsp-len>
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53 <Statistics_eff-space>3667980</Statistics_eff-space>
0
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54 <Statistics_kappa>0.071</Statistics_kappa>
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55 <Statistics_lambda>0.299</Statistics_lambda>
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56 <Statistics_entropy>0.27</Statistics_entropy>
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57 </Statistics>
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58 </Iteration_stat>
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59 <Iteration_message>No hits found</Iteration_message>
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60 </Iteration>
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61 <Iteration>
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62 <Iteration_iter-num>3</Iteration_iter-num>
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63 <Iteration_query-ID>Query_3</Iteration_query-ID>
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64 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
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65 <Iteration_query-len>1382</Iteration_query-len>
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66 <Iteration_hits>
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67 </Iteration_hits>
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68 <Iteration_stat>
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69 <Statistics>
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70 <Statistics_db-num>0</Statistics_db-num>
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71 <Statistics_db-len>0</Statistics_db-len>
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72 <Statistics_hsp-len>32</Statistics_hsp-len>
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73 <Statistics_eff-space>4374000</Statistics_eff-space>
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74 <Statistics_kappa>0.071</Statistics_kappa>
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75 <Statistics_lambda>0.299</Statistics_lambda>
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76 <Statistics_entropy>0.27</Statistics_entropy>
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77 </Statistics>
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78 </Iteration_stat>
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79 <Iteration_message>No hits found</Iteration_message>
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80 </Iteration>
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81 <Iteration>
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82 <Iteration_iter-num>4</Iteration_iter-num>
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83 <Iteration_query-ID>Query_4</Iteration_query-ID>
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84 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
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85 <Iteration_query-len>348</Iteration_query-len>
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86 <Iteration_hits>
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87 <Hit>
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88 <Hit_num>1</Hit_num>
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89 <Hit_id>gi|57163782|ref|NM_001009242.1|</Hit_id>
0
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90 <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def>
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91 <Hit_accession>Subject_1</Hit_accession>
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92 <Hit_len>1047</Hit_len>
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93 <Hit_hsps>
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94 <Hsp>
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95 <Hsp_num>1</Hsp_num>
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96 <Hsp_bit-score>732.393</Hsp_bit-score>
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97 <Hsp_score>1689</Hsp_score>
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98 <Hsp_evalue>0</Hsp_evalue>
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99 <Hsp_query-from>1</Hsp_query-from>
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100 <Hsp_query-to>348</Hsp_query-to>
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101 <Hsp_hit-from>1</Hsp_hit-from>
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102 <Hsp_hit-to>1044</Hsp_hit-to>
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103 <Hsp_query-frame>0</Hsp_query-frame>
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104 <Hsp_hit-frame>1</Hsp_hit-frame>
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105 <Hsp_identity>336</Hsp_identity>
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106 <Hsp_positive>343</Hsp_positive>
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107 <Hsp_gaps>0</Hsp_gaps>
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108 <Hsp_align-len>348</Hsp_align-len>
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109 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
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110 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq>
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111 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
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112 </Hsp>
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113 </Hit_hsps>
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114 </Hit>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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115 <Hit>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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116 <Hit_num>2</Hit_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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117 <Hit_id>gi|18148870|dbj|AB062417.1|</Hit_id>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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118 <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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119 <Hit_accession>Subject_5</Hit_accession>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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120 <Hit_len>1047</Hit_len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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121 <Hit_hsps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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122 <Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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123 <Hsp_num>1</Hsp_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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124 <Hsp_bit-score>711.256</Hsp_bit-score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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125 <Hsp_score>1640</Hsp_score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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126 <Hsp_evalue>0</Hsp_evalue>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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127 <Hsp_query-from>1</Hsp_query-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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128 <Hsp_query-to>348</Hsp_query-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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129 <Hsp_hit-from>1</Hsp_hit-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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130 <Hsp_hit-to>1044</Hsp_hit-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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131 <Hsp_query-frame>0</Hsp_query-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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132 <Hsp_hit-frame>1</Hsp_hit-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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133 <Hsp_identity>325</Hsp_identity>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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134 <Hsp_positive>337</Hsp_positive>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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135 <Hsp_gaps>0</Hsp_gaps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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136 <Hsp_align-len>348</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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137 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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138 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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139 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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140 </Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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141 </Hit_hsps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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142 </Hit>
0
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143 <Hit>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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144 <Hit_num>3</Hit_num>
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145 <Hit_id>gi|283855822|gb|GQ290312.1|</Hit_id>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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146 <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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147 <Hit_accession>Subject_4</Hit_accession>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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148 <Hit_len>983</Hit_len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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149 <Hit_hsps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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150 <Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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151 <Hsp_num>1</Hsp_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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152 <Hsp_bit-score>658.198</Hsp_bit-score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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153 <Hsp_score>1517</Hsp_score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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154 <Hsp_evalue>0</Hsp_evalue>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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155 <Hsp_query-from>11</Hsp_query-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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156 <Hsp_query-to>336</Hsp_query-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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157 <Hsp_hit-from>1</Hsp_hit-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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158 <Hsp_hit-to>978</Hsp_hit-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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159 <Hsp_query-frame>0</Hsp_query-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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160 <Hsp_hit-frame>1</Hsp_hit-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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161 <Hsp_identity>310</Hsp_identity>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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162 <Hsp_positive>322</Hsp_positive>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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163 <Hsp_gaps>0</Hsp_gaps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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164 <Hsp_align-len>326</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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165 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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166 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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167 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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168 </Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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diff changeset
169 </Hit_hsps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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170 </Hit>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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diff changeset
171 <Hit>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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172 <Hit_num>4</Hit_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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173 <Hit_id>gi|2734705|gb|U59921.1|BBU59921</Hit_id>
0
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174 <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def>
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175 <Hit_accession>Subject_2</Hit_accession>
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176 <Hit_len>1574</Hit_len>
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177 <Hit_hsps>
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178 <Hsp>
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179 <Hsp_num>1</Hsp_num>
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180 <Hsp_bit-score>646.12</Hsp_bit-score>
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181 <Hsp_score>1489</Hsp_score>
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182 <Hsp_evalue>0</Hsp_evalue>
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183 <Hsp_query-from>1</Hsp_query-from>
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184 <Hsp_query-to>341</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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185 <Hsp_hit-from>42</Hsp_hit-from>
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186 <Hsp_hit-to>1067</Hsp_hit-to>
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187 <Hsp_query-frame>0</Hsp_query-frame>
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188 <Hsp_hit-frame>3</Hsp_hit-frame>
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189 <Hsp_identity>290</Hsp_identity>
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190 <Hsp_positive>320</Hsp_positive>
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191 <Hsp_gaps>1</Hsp_gaps>
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192 <Hsp_align-len>342</Hsp_align-len>
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193 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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194 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq>
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195 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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196 </Hsp>
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197 </Hit_hsps>
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198 </Hit>
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199 <Hit>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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200 <Hit_num>5</Hit_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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201 <Hit_id>gi|12583664|dbj|AB043817.1|</Hit_id>
0
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peterjc
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202 <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def>
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peterjc
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203 <Hit_accession>Subject_6</Hit_accession>
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204 <Hit_len>1344</Hit_len>
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205 <Hit_hsps>
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206 <Hsp>
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207 <Hsp_num>1</Hsp_num>
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208 <Hsp_bit-score>626.708</Hsp_bit-score>
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209 <Hsp_score>1444</Hsp_score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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210 <Hsp_evalue>0</Hsp_evalue>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
211 <Hsp_query-from>1</Hsp_query-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
212 <Hsp_query-to>341</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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213 <Hsp_hit-from>23</Hsp_hit-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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214 <Hsp_hit-to>1048</Hsp_hit-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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215 <Hsp_query-frame>0</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
216 <Hsp_hit-frame>2</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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217 <Hsp_identity>281</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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218 <Hsp_positive>311</Hsp_positive>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
219 <Hsp_gaps>1</Hsp_gaps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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220 <Hsp_align-len>342</Hsp_align-len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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221 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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222 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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223 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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224 </Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
225 </Hit_hsps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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226 </Hit>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
227 <Hit>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
228 <Hit_num>6</Hit_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
229 <Hit_id>gi|283855845|gb|GQ290303.1|</Hit_id>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
230 <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
231 <Hit_accession>Subject_3</Hit_accession>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
232 <Hit_len>4301</Hit_len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
233 <Hit_hsps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
234 <Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
235 <Hsp_num>1</Hsp_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
236 <Hsp_bit-score>151.343</Hsp_bit-score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
237 <Hsp_score>342</Hsp_score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
238 <Hsp_evalue>1.34146e-71</Hsp_evalue>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
239 <Hsp_query-from>239</Hsp_query-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
240 <Hsp_query-to>312</Hsp_query-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
241 <Hsp_hit-from>3147</Hsp_hit-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
242 <Hsp_hit-to>3368</Hsp_hit-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
243 <Hsp_query-frame>0</Hsp_query-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
244 <Hsp_hit-frame>3</Hsp_hit-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
245 <Hsp_identity>69</Hsp_identity>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
246 <Hsp_positive>73</Hsp_positive>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
247 <Hsp_gaps>0</Hsp_gaps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
248 <Hsp_align-len>74</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
249 <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
250 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
251 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
252 </Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
253 <Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
254 <Hsp_num>2</Hsp_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
255 <Hsp_bit-score>126.324</Hsp_bit-score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
256 <Hsp_score>284</Hsp_score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
257 <Hsp_evalue>1.34146e-71</Hsp_evalue>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
258 <Hsp_query-from>177</Hsp_query-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
259 <Hsp_query-to>235</Hsp_query-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
260 <Hsp_hit-from>2855</Hsp_hit-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
261 <Hsp_hit-to>3031</Hsp_hit-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
262 <Hsp_query-frame>0</Hsp_query-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
263 <Hsp_hit-frame>2</Hsp_hit-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
264 <Hsp_identity>54</Hsp_identity>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
265 <Hsp_positive>57</Hsp_positive>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
266 <Hsp_gaps>0</Hsp_gaps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
267 <Hsp_align-len>59</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
268 <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
269 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
270 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
271 </Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
272 <Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
273 <Hsp_num>3</Hsp_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
274 <Hsp_bit-score>229.42</Hsp_bit-score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
275 <Hsp_score>523</Hsp_score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
276 <Hsp_evalue>3.3088e-67</Hsp_evalue>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
277 <Hsp_query-from>11</Hsp_query-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
278 <Hsp_query-to>121</Hsp_query-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
279 <Hsp_hit-from>1</Hsp_hit-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
280 <Hsp_hit-to>333</Hsp_hit-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
281 <Hsp_query-frame>0</Hsp_query-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
282 <Hsp_hit-frame>1</Hsp_hit-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
283 <Hsp_identity>107</Hsp_identity>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
284 <Hsp_positive>109</Hsp_positive>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
285 <Hsp_gaps>0</Hsp_gaps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
286 <Hsp_align-len>111</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
287 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
288 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
289 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
290 </Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
291 <Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
292 <Hsp_num>4</Hsp_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
293 <Hsp_bit-score>122.873</Hsp_bit-score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
294 <Hsp_score>276</Hsp_score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
295 <Hsp_evalue>2.31174e-32</Hsp_evalue>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
296 <Hsp_query-from>119</Hsp_query-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
297 <Hsp_query-to>177</Hsp_query-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
298 <Hsp_hit-from>1404</Hsp_hit-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
299 <Hsp_hit-to>1580</Hsp_hit-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
300 <Hsp_query-frame>0</Hsp_query-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
301 <Hsp_hit-frame>3</Hsp_hit-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
302 <Hsp_identity>55</Hsp_identity>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
303 <Hsp_positive>56</Hsp_positive>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
304 <Hsp_gaps>0</Hsp_gaps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
305 <Hsp_align-len>59</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
306 <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
307 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
308 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
309 </Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
310 <Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
311 <Hsp_num>5</Hsp_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
312 <Hsp_bit-score>57.7368</Hsp_bit-score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
313 <Hsp_score>125</Hsp_score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
314 <Hsp_evalue>3.61181e-12</Hsp_evalue>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
315 <Hsp_query-from>312</Hsp_query-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
316 <Hsp_query-to>337</Hsp_query-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
317 <Hsp_hit-from>4222</Hsp_hit-from>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
318 <Hsp_hit-to>4299</Hsp_hit-to>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
319 <Hsp_query-frame>0</Hsp_query-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
320 <Hsp_hit-frame>1</Hsp_hit-frame>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
321 <Hsp_identity>23</Hsp_identity>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
322 <Hsp_positive>24</Hsp_positive>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
323 <Hsp_gaps>0</Hsp_gaps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
324 <Hsp_align-len>26</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
325 <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
326 <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
327 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
328 </Hsp>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
329 </Hit_hsps>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
330 </Hit>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
331 </Iteration_hits>
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peterjc
parents:
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332 <Iteration_stat>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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333 <Statistics>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
334 <Statistics_db-num>0</Statistics_db-num>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
335 <Statistics_db-len>0</Statistics_db-len>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
336 <Statistics_hsp-len>27</Statistics_hsp-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
337 <Statistics_eff-space>1049670</Statistics_eff-space>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
338 <Statistics_kappa>0.071</Statistics_kappa>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
339 <Statistics_lambda>0.299</Statistics_lambda>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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340 <Statistics_entropy>0.27</Statistics_entropy>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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341 </Statistics>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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342 </Iteration_stat>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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343 </Iteration>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
344 </BlastOutput_iterations>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
345 </BlastOutput>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
346