Mercurial > repos > devteam > merge_cols
comparison mergeCols.xml @ 0:11de536c87b1 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author | devteam |
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date | Mon, 09 Nov 2015 11:45:18 -0500 |
parents | |
children | 26d0d9bdbafc |
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1 <tool id="mergeCols1" name="Merge Columns" version="1.0.1"> | |
2 <description>together</description> | |
3 <command interpreter="python"> | |
4 mergeCols.py | |
5 "${input1}" | |
6 "${out_file1}" | |
7 "${col1}" | |
8 "${col2}" | |
9 #for $col in $columns | |
10 ${col.datacol} | |
11 #end for | |
12 </command> | |
13 <inputs> | |
14 <param format="tabular" name="input1" type="data" label="Select data" help="Dataset missing? See TIP below."/> | |
15 <param name="col1" label="Merge column" type="data_column" data_ref="input1" /> | |
16 <param name="col2" label="with column" type="data_column" data_ref="input1" help="Need to add more columns? Use controls below."/> | |
17 <repeat name="columns" title="Columns"> | |
18 <param name="datacol" label="Add column" type="data_column" data_ref="input1" /> | |
19 </repeat> | |
20 </inputs> | |
21 <outputs> | |
22 <data format="tabular" name="out_file1" /> | |
23 </outputs> | |
24 <tests> | |
25 <test> | |
26 <param name="input1" value="1.bed"/> | |
27 <param name="col1" value="4" /> | |
28 <param name="col2" value="1" /> | |
29 <param name="datacol" value="6" /> | |
30 <output name="out_file1" file="mergeCols.dat"/> | |
31 </test> | |
32 </tests> | |
33 <help> | |
34 | |
35 .. class:: infomark | |
36 | |
37 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* | |
38 | |
39 ----- | |
40 | |
41 **What it does** | |
42 | |
43 This tool merges columns together. Any number of valid columns can be merged in any order. | |
44 | |
45 ----- | |
46 | |
47 **Example** | |
48 | |
49 Input dataset (five columns: c1, c2, c3, c4, and c5):: | |
50 | |
51 1 10 1000 gene1 chr | |
52 2 100 1500 gene2 chr | |
53 | |
54 merging columns "**c5,c1**" will return:: | |
55 | |
56 1 10 1000 gene1 chr chr1 | |
57 2 100 1500 gene2 chr chr2 | |
58 | |
59 .. class:: warningmark | |
60 | |
61 Note that all original columns are preserved and the result of merge is added as the rightmost column. | |
62 </help> | |
63 </tool> |