Mercurial > repos > devteam > merge_cols
view mergeCols.xml @ 1:26d0d9bdbafc draft
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols commit dc2e3b631f515e905d5645baa4fb49df8e8cc0d5"
author | devteam |
---|---|
date | Wed, 03 Jun 2020 14:22:15 +0000 |
parents | 11de536c87b1 |
children | 4576d639d805 |
line wrap: on
line source
<tool id="mergeCols1" name="Merge Columns" version="1.0.2"> <description>together</description> <requirements> <requirement type="package" version="3.7">python</requirement> </requirements> <command interpreter="python"> mergeCols.py "${input1}" "${out_file1}" "${col1}" "${col2}" #for $col in $columns ${col.datacol} #end for </command> <inputs> <param format="tabular" name="input1" type="data" label="Select data" help="Dataset missing? See TIP below."/> <param name="col1" label="Merge column" type="data_column" data_ref="input1" /> <param name="col2" label="with column" type="data_column" data_ref="input1" help="Need to add more columns? Use controls below."/> <repeat name="columns" title="Columns"> <param name="datacol" label="Add column" type="data_column" data_ref="input1" /> </repeat> </inputs> <outputs> <data format="tabular" name="out_file1" /> </outputs> <tests> <test> <param name="input1" value="1.bed"/> <param name="col1" value="4" /> <param name="col2" value="1" /> <param name="datacol" value="6" /> <output name="out_file1" file="mergeCols.dat"/> </test> </tests> <help> .. class:: infomark **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* ----- **What it does** This tool merges columns together. Any number of valid columns can be merged in any order. ----- **Example** Input dataset (five columns: c1, c2, c3, c4, and c5):: 1 10 1000 gene1 chr 2 100 1500 gene2 chr merging columns "**c5,c1**" will return:: 1 10 1000 gene1 chr chr1 2 100 1500 gene2 chr chr2 .. class:: warningmark Note that all original columns are preserved and the result of merge is added as the rightmost column. </help> </tool>