Mercurial > repos > devteam > kraken_report
view macros.xml @ 3:a539aeea69fc draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit ce0de4de3fa3fc25c375e378ac84f78452dd61c3
author | devteam |
---|---|
date | Wed, 05 Aug 2015 12:13:09 -0400 |
parents | bb3d55e8ef3d |
children | e9e42bf5c6a8 |
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<?xml version="1.0"?> <macros> <xml name="requirements"> <requirements> <requirement type="package" version="0.10.5">kraken</requirement> </requirements> </xml> <xml name="stdio"> <stdio> <exit_code description="Tool exception" level="fatal" range="1:" /> </stdio> </xml> <xml name="version_command"> <version_command>export LC_ALL=C && kraken --version</version_command> </xml> <xml name="input_database"> <param label="Select a Kraken database" name="kraken_database" type="select"> <options from_data_table="kraken_databases"> <validator message="No databases are available built-in" type="no_options" /> </options> </param> </xml> <xml name="citations"> <citations> <citation type="doi">10.1186/gb-2014-15-3-r46</citation> </citations> </xml> <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token> <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token> </macros>