Mercurial > repos > devteam > kraken_report

annotate macros.xml @ 3:a539aeea69fc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit ce0de4de3fa3fc25c375e378ac84f78452dd61c3
author devteam
date Wed, 05 Aug 2015 12:13:09 -0400
parents bb3d55e8ef3d
children e9e42bf5c6a8
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
1 <?xml version="1.0"?>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
2 <macros>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
3 <xml name="requirements">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
4 <requirements>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
5 <requirement type="package" version="0.10.5">kraken</requirement>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
6 </requirements>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
7 </xml>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
8 <xml name="stdio">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
9 <stdio>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
10 <exit_code description="Tool exception" level="fatal" range="1:" />
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
11 </stdio>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
12 </xml>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
13 <xml name="version_command">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
14 <version_command>export LC_ALL=C &amp;&amp; kraken --version</version_command>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
15 </xml>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
16 <xml name="input_database">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
17 <param label="Select a Kraken database" name="kraken_database" type="select">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
18 <options from_data_table="kraken_databases">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
19 <validator message="No databases are available built-in" type="no_options" />
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
20 </options>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
21 </param>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
22 </xml>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
23 <xml name="citations">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
24 <citations>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
25 <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
26 </citations>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
27 </xml>
1
bb3d55e8ef3d planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
devteam
parents: 0
diff changeset
28 <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token>
bb3d55e8ef3d planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
devteam
parents: 0
diff changeset
29 <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token>
0
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
30 </macros>