Mercurial > repos > devteam > fastx_reverse_complement
changeset 5:a4167b7c73cb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_reverse_complement commit 4c002e52261da2e7609735883d91fa1610ce6ce7"
| author | iuc |
|---|---|
| date | Thu, 30 Jan 2020 18:28:08 +0000 |
| parents | 64203edc4ec1 |
| children | 80aff5c453b0 |
| files | fastx_reverse_complement.xml macros.xml |
| diffstat | 2 files changed, 8 insertions(+), 5 deletions(-) [+] |
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--- a/fastx_reverse_complement.xml Wed Aug 22 11:03:42 2018 -0400 +++ b/fastx_reverse_complement.xml Thu Jan 30 18:28:08 2020 +0000 @@ -1,14 +1,15 @@ -<tool id="cshl_fastx_reverse_complement" version="1.0.2" name="Reverse-Complement"> +<tool id="cshl_fastx_reverse_complement" version="1.0.2+galaxy0" name="Reverse-Complement"> <description></description> <macros> <import>macros.xml</import> </macros> - <expand macro="requirements" /> + <expand macro="requirements"> + <requirement type="package" version="1.0.8">bzip2</requirement> + </expand> <command detect_errors="exit_code"><![CDATA[ @CATS@ fastx_reverse_complement -v --o '$output' @FQQUAL@ -@GZIP@ +@GZIP@ > '$output' ]]></command> <inputs> <expand macro="fastx_input" />
--- a/macros.xml Wed Aug 22 11:03:42 2018 -0400 +++ b/macros.xml Thu Jan 30 18:28:08 2020 +0000 @@ -21,7 +21,9 @@ <token name="@GZIP@"> <![CDATA[ #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - -z + | gzip -c + #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): + | bzip2 -c #end if ]]> </token>