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changeset 7:1ed39263173b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastqtofasta commit a5766d27dcddd1891766476a913d0eae1ec7a3c9
author iuc
date Sun, 23 Nov 2025 17:49:56 +0000
parents 6156c02cd993
children
files fastq_to_fasta.xml macros.xml test-data/sanger_full_range_original_sanger.fastqsanger.gz
diffstat 3 files changed, 10 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_to_fasta.xml	Fri Oct 04 10:34:07 2024 +0000
+++ b/fastq_to_fasta.xml	Sun Nov 23 17:49:56 2025 +0000
@@ -14,7 +14,7 @@
 gx-fastq-to-fasta '$input_file' '$output_file' '${input_file.extension[len('fastq'):]}'
     ]]></command>
     <inputs>
-        <param name="input_file" type="data" format="fastq,fastq.gz,fastq.bz2" label="FASTQ file to convert" />
+        <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ file to convert" />
     </inputs>
     <outputs>
         <data name="output_file" format="fasta" />
@@ -25,6 +25,11 @@
             <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
             <output name="output_file" file="fastq_to_fasta_python_1.out" />
         </test>
+        <!-- basic test -->
+        <test>
+            <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger.gz" ftype="fastqsanger.gz" />
+            <output name="output_file" file="fastq_to_fasta_python_1.out" />
+        </test>
         <!-- color space test -->
         <test>
             <param name="input_file" value="sanger_full_range_as_cssanger.fastqcssanger" ftype="fastqcssanger" />
--- a/macros.xml	Fri Oct 04 10:34:07 2024 +0000
+++ b/macros.xml	Sun Nov 23 17:49:56 2025 +0000
@@ -1,11 +1,11 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.1.5</token>
-    <token name="@VERSION_SUFFIX@">2</token>
-    <token name="@PROFILE@">23.1</token>
+    <token name="@TOOL_VERSION@">1.2</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">24.2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">galaxy_sequence_utils</requirement>
             <yield/>
         </requirements>
-    </xml>>
+    </xml>
 </macros>
Binary file test-data/sanger_full_range_original_sanger.fastqsanger.gz has changed