Mercurial > repos > devteam > fastq_to_tabular
changeset 1:81c9b58760ff draft
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
| author | devteam |
|---|---|
| date | Tue, 13 Oct 2015 12:44:41 -0400 |
| parents | e018cfd2dc02 |
| children | 9616277d3d39 |
| files | fastq_to_tabular.xml tool_dependencies.xml |
| diffstat | 2 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/fastq_to_tabular.xml Thu Jan 23 12:31:52 2014 -0500 +++ b/fastq_to_tabular.xml Tue Oct 13 12:44:41 2015 -0400 @@ -6,7 +6,7 @@ <command interpreter="python">fastq_to_tabular.py '$input_file' '$output_file' $descr_columns '${input_file.extension[len( 'fastq' ):]}'</command> <inputs> <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa" label="FASTQ file to convert" /> - <param name="descr_columns" type="integer" size="2" value="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column"> + <param name="descr_columns" type="integer" value="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column"> <validator type="in_range" min="1" /> </param> </inputs> @@ -95,10 +95,10 @@ ------ -**Citation** - -If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_ - - </help> + + <citations> + <citation type="doi">10.1093/bioinformatics/btq281</citation> + </citations> + </tool>
--- a/tool_dependencies.xml Thu Jan 23 12:31:52 2014 -0500 +++ b/tool_dependencies.xml Tue Oct 13 12:44:41 2015 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="galaxy_sequence_utils" version="1.0.0"> - <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>