Mercurial > repos > devteam > fastq_paired_end_interlacer
changeset 2:1adeef975783 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_interlacer commit 28c441e8aa66a55d276b0f6325d34086eb715872
| author | devteam |
|---|---|
| date | Sat, 07 Oct 2017 10:00:35 -0400 |
| parents | e0a8fba7ed2f |
| children | a59c6f7b14c3 |
| files | fastq_paired_end_interlacer.xml test-data/paired_end_1_errors.fastqsanger.bz2 test-data/paired_end_1_errors.fastqsanger.gz test-data/paired_end_2_errors.fastqsanger.bz2 test-data/paired_end_2_errors.fastqsanger.gz |
| diffstat | 5 files changed, 16 insertions(+), 2 deletions(-) [+] |
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--- a/fastq_paired_end_interlacer.xml Sat Sep 30 14:57:07 2017 -0400 +++ b/fastq_paired_end_interlacer.xml Sat Oct 07 10:00:35 2017 -0400 @@ -1,7 +1,7 @@ -<tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="1.2.0"> +<tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="1.2.0.1"> <description>on paired end reads</description> <requirements> - <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> + <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement> </requirements> <command><![CDATA[ gx-fastq-paired-end-interlacer @@ -61,6 +61,20 @@ <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger" /> </test> <test> + <param name="reads_selector" value="paired" /> + <param name="input1_file" value="paired_end_1_errors.fastqsanger.gz" ftype="fastqsanger.gz" /> + <param name="input2_file" value="paired_end_2_errors.fastqsanger.gz" ftype="fastqsanger.gz" /> + <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> + <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> + </test> + <test> + <param name="reads_selector" value="paired" /> + <param name="input1_file" value="paired_end_1_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" /> + <param name="input2_file" value="paired_end_2_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" /> + <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> + <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> + </test> + <test> <param name="reads_selector" value="paired_collection" /> <param name="reads_coll"> <collection type="paired">