Mercurial > repos > devteam > fastq_masker_by_quality
changeset 5:fcf810725e6c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_masker_by_quality commit d4ced60a941c4c4a2fe95de9c09a10086810b387"
| author | iuc |
|---|---|
| date | Wed, 19 Feb 2020 16:56:17 +0000 |
| parents | bf7a192ad8e2 |
| children | 33a01356742b |
| files | fastq_masker_by_quality.xml macros.xml |
| diffstat | 2 files changed, 16 insertions(+), 6 deletions(-) [+] |
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--- a/fastq_masker_by_quality.xml Fri Nov 01 13:17:50 2019 -0400 +++ b/fastq_masker_by_quality.xml Wed Feb 19 16:56:17 2020 +0000 @@ -1,8 +1,9 @@ -<tool id="fastq_masker_by_quality" name="FASTQ Masker" version="1.1.1"> +<tool id="fastq_masker_by_quality" name="FASTQ Masker" version="@TOOL_VERSION@"> <description>by quality score</description> - <requirements> - <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> - </requirements> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> <edam_topics> <edam_topic>topic_0622</edam_topic> </edam_topics> @@ -10,8 +11,8 @@ <edam_operation>operation_0368</edam_operation> </edam_operations> <command><![CDATA[ -gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len( 'fastq' ):]}' -s ${quality_score} -c ${score_comparison} -#if $mask_type.value == 'lowercase' +gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s ${quality_score} -c ${score_comparison} +#if $mask_type == 'lowercase' --lowercase #else -m ${mask_type}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Wed Feb 19 16:56:17 2020 +0000 @@ -0,0 +1,9 @@ +<macros> + <token name="@TOOL_VERSION@">1.1.5</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">galaxy_sequence_utils</requirement> + <yield/> + </requirements> + </xml>> +</macros>