comparison fastq_masker_by_quality.xml @ 5:fcf810725e6c draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_masker_by_quality commit d4ced60a941c4c4a2fe95de9c09a10086810b387"

4:bf7a192ad8e2

<tool id="fastq_masker_by_quality" name="FASTQ Masker" version="1.1.1">
    <description>by quality score</description>
    <requirements>
        <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement>
    </requirements>
    <edam_topics>
        <edam_topic>topic_0622</edam_topic>
    </edam_topics>
    <edam_operations>
        <edam_operation>operation_0368</edam_operation>
    </edam_operations>
    <command><![CDATA[
gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len( 'fastq' ):]}' -s ${quality_score} -c ${score_comparison}
#if $mask_type.value == 'lowercase'
    --lowercase
#else
    -m ${mask_type}
#end if
    ]]></command>

5:fcf810725e6c

<tool id="fastq_masker_by_quality" name="FASTQ Masker" version="@TOOL_VERSION@">
    <description>by quality score</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <edam_topics>
        <edam_topic>topic_0622</edam_topic>
    </edam_topics>
    <edam_operations>
        <edam_operation>operation_0368</edam_operation>
    </edam_operations>
    <command><![CDATA[
gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s ${quality_score} -c ${score_comparison}
#if $mask_type == 'lowercase'
    --lowercase
#else
    -m ${mask_type}
#end if
    ]]></command>