Mercurial > repos > devteam > fastq_manipulation

changeset 2:16d28d67ebeb draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_manipulation commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 19:28:39 -0500
parents b50aeae8bcaa
children 7ea141c4c834
files fastq_manipulation.xml tool_dependencies.xml
diffstat 2 files changed, 4 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_manipulation.xml	Tue Oct 13 12:43:07 2015 -0400
+++ b/fastq_manipulation.xml	Fri Dec 18 19:28:39 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="fastq_manipulation" name="Manipulate FASTQ" version="1.0.1">
+<tool id="fastq_manipulation" name="Manipulate FASTQ" version="1.0.2">
   <options sanitize="False" /> <!-- This tool uses a file to rely all parameter information (actually a dynamically generated python module), we can safely not sanitize any parameters -->
   <requirements>
     <requirement type="package" version="1.0.0">galaxy_sequence_utils</requirement>
@@ -101,8 +101,7 @@
                       <validator type="in_range" message="Base Offsets must be positive" min="0" max="inf"/>
                       <validator type="expression" message="An integer is required.">int( float( value ) ) == float( value )</validator>
                     </param>
-                    <param name="right_column_offset" label="Offset from 3' end" value="0" type="integer" help="Values start at 0, increasing from the right">
-                      <validator type="in_range" message="Base Offsets must be positive" min="0" max="inf"/>
+                    <param name="right_column_offset" label="Offset from 3' end" value="0" type="integer" help="Values start at 0, increasing from the right; use a negative value to remove everything to the right of the absolute value of the position">
                       <validator type="expression" message="An integer is required.">int( float( value ) ) == float( value )</validator>
                     </param>
                   </when>
@@ -208,7 +207,7 @@
     left_column_offset = ${ manipulate_block['manipulation_type']['manipulation']['offset_type']['left_column_offset'] }
     right_column_offset = ${ manipulate_block['manipulation_type']['manipulation']['offset_type']['right_column_offset'] }
                 #end if
-    if right_column_offset > 0:
+    if right_column_offset != 0:
         right_column_offset = -right_column_offset
     else:
         right_column_offset = None
--- a/tool_dependencies.xml	Tue Oct 13 12:43:07 2015 -0400
+++ b/tool_dependencies.xml	Fri Dec 18 19:28:39 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="galaxy_sequence_utils" version="1.0.0">
-      <repository changeset_revision="195699b1562a" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="6334612a010e" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>